ViewGene
Locus Name:
GeneID:
Location:

GeneID:1293
TrivialName: PA14_53800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53800
PAO1 Ortholog Locus:PA0809
Sequence Length:1317
Protein Length:438
Start: 4769911
Stop: 4771227
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD46619.1|AF161320_1 (AF161320) NRAMP protein MntH2 [Pseudomonas aeruginosa]
Identities = 438/438 (100%), Positives = 438/438 (100%)
Sequence:
ATGTCCGCGAAGGATACCCCGGCCCCCCAGGCCGCCGAGCCCGGTCGCGCCCAGCCGGTCGAAGTCCCCGGT
GGCGGCCACTGGTGGCGCCGCCTGCTGGCCTTCGCCGGCCCCGGCTACCTGGTCGCGGTGGGCTACATGGAC
CCGGGCAACTGGGCCACCGACGTCGCCGGCGGCGCGCAGCTGGGCTACCTGCTGCTCTCGGTGATCCTGCTC
TCCAGCCTGATGGCGATGCTGCTGCAGGCGCTGTCCGCGCGCCTGGGCATCGCCAGCGGCCTGGACCTGGCC
CAGGCCTGCCGCGAACGCTACTCGCCGAGCACCTGCCGCCTGCTGTGGCTGGCCTGCGAGACGGCGATCATC
GCCTGCGACCTGGCCGAGGTGATCGGCACCGCCATCGCCCTGAAGCTGCTGTTCGGCCTGCCGCTGGCCTGG
GGCGCGTTGCTCTGCGTGGGCGACGCGCTGCTGGTGCTGGTCCTGATCGGACGTGGCCAGCGGCCGCTGGAG
GCCTTCGTGGTGGCGTTGCTGACACTGATCTTCGCCTGCTTCGCGGTACAGTTGCTGCTCTCGCGTCCCGAA
CTCGGCGAGGTGCTCCAAGGGTTCTTGCCGAGCCCGCGGGTGCTCAGCGATCCGGCTGCCCTGTACCTGGCG
ATCGGCATCGTCGGCGCGACCGTCATGCCGCACAACCTCTACCTGCATTCCTCGCTGGTGCAGAGCCGCGCC
TACCCACGCAGCCTCGCCGGCAAGCGCCAGGCGCTGCGCTGGGCGGTGGCCGACAGCAGCCTGGCGCTGACC
CTGGCGCTGCTGGTCAACGCGGCGATCCTGATCGTCGCCGCCAGCGTGTTCCACCGCAACGGGCACACCGAA
GTGGTCGATATCGAGCAGGCCCACGCGCTGCTCTCGCCATTGCTCGGCCTGGAACTCGCCTCGCTGCTGTTC
GCCGTGGCGCTGCTCGCGTCCGGCCTCAACTCGACGGTCACCACCACCCTGGCCGGGCAGATCGTCATGGAG
GGCTTCCTCCGCCTGCGCCTGGCGCCCTGGGCGCGGCGCCTGCTGACCCGTGGCGTCGCGGTGCTGCCGGTG
CTGCTGGTGACCCTGCTCTACGGCGAGGACGGCACCGCGCGGCTGCTGATCTTCAGCCAGGTGATCCTGTCG
ATGCAGTTGCCGCTGGCGGTGATCCCGCTGCTACAGTTCGTTTCTGACCGGCGCCTGATGGGCCCGCTGGCG
ATCGGCGCCGGGACCCGGTGGCTGGCCTGGGCGGTAGCGCTGGCGATCGTCGGCCTGAACCTGCAACTGCTG
GCCGACTTCGCGTTCGGCTGA
Translation:
MSAKDTPAPQAAEPGRAQPVEVPGGGHWWRRLLAFAGPGYLVAVGYMDPGNWATDVAGGAQLGYLLLSVILL
SSLMAMLLQALSARLGIASGLDLAQACRERYSPSTCRLLWLACETAIIACDLAEVIGTAIALKLLFGLPLAW
GALLCVGDALLVLVLIGRGQRPLEAFVVALLTLIFACFAVQLLLSRPELGEVLQGFLPSPRVLSDPAALYLA
IGIVGATVMPHNLYLHSSLVQSRAYPRSLAGKRQALRWAVADSSLALTLALLVNAAILIVAASVFHRNGHTE
VVDIEQAHALLSPLLGLELASLLFAVALLASGLNSTVTTTLAGQIVMEGFLRLRLAPWARRLLTRGVAVLPV
LLVTLLYGEDGTARLLIFSQVILSMQLPLAVIPLLQFVSDRRLMGPLAIGAGTRWLAWAVALAIVGLNLQLL
ADFAFG*
AnnotationID:1302GeneID:1293
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 16:04:07
Gene Name:mntH2
Confidence Code:2
GeneProduct:NRAMP protein MntH2
Cell Localization:()
Synonyms:PA0809
Cell Localization Confidence Code:5
MolecularFunction:possible pH-stimulated Mn2+ transporter
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1291, pfam01566, COG1914
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
100% identical to mntH2 of P. aeruginosa PAO1024.






 
Structural Features:
KOG1291, Mn2+ and Fe2+ transporters of the NRAMP family.  Score: 380, 3e-106
pfam01566, Nramp, Natural resistance-associated macrophage protein.  Score: 342, 7e-95
COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family.  Score: 333, 6e-92






   
Genomic Context:






   
Comment:


















    ReferenceID:2589




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31758




  
Author/Investigator(s):
        Kehres DG, Zaharik ML, Finlay BB, Maguire ME





  
Title:
        The NRAMP proteins of Salmonella typhimurium and Escherichia coli are selective manganese transporters involved in the response to reactive oxygen.





  
PubMed:
        10844693


MedLine:
        20305051




    
Source:






    
Reference Type:PDF (text/plain)







    
Data:j.1365-2958.2000.01922.x.pdf


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1293
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
75643
                           gb|AAD46619.1|AF161320_1
                           (AF161320) NRAMP protein MntH2 [Pseudomonas aeruginosa]
                           438
                           99.99
                           99.99
                           0
                           2177.0
     

     
     
2354
                           PA0809_tr
                           translation of PA0809
                           438
                           99.77
                           99.99
                           0
                           2173.0
     

     
     
75644
                           gb|AAG04198.1|AE004516_3
                           (AE004516) probable transporter [Pseudomonas aeruginosa PAO1]
                           438
                           99.77
                           99.99
                           0
                           2173.0
     

     
     
75645
                           gb|AAM41451.1|
                           (AE012324) manganese transport protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           444
                           67.79
                           80.40
                           6
                           1498.0
     

     
     
75646
                           gb|AAM36898.1|
                           (AE011839) manganese transport protein [Xanthomonas axonopodis pv. citri str. 306]
                           445
                           66.74
                           79.55
                           8
                           1472.0
     

     






      

          
GC ORFID: 44295How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0809Glimmer Score: 

          
Start: 183996Stop: 182680

          
Length: 1317


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0809 translation of PA0809Homolog Bit Score 841.0

          
Other Homologs:  t_PA4334 (ORF: BLASTX 400.0), psyr_15may02_Scaffold1_revised_gene1271 (ORF: BLASTX 389.0), t_PA0809 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCGAAGGATACCCCGGCCCCCCAGGCCGCCGAGCCCGGTCGCGCCCAGCCGGTCGAAGTCCCCGGT 
GGCGGCCACTGGTGGCGCCGCCTGCTGGCCTTCGCCGGCCCCGGCTACCTGGTCGCGGTGGGCTACATGGAC 
CCGGGCAACTGGGCCACCGACGTCGCCGGCGGCGCGCAGCTGGGCTACCTGCTGCTCTCGGTGATCCTGCTC 
TCCAGCCTGATGGCGATGCTGCTGCAGGCGCTGTCCGCGCGCCTGGGCATCGCCAGCGGCCTGGACCTGGCC 
CAGGCCTGCCGCGAACGCTACTCGCCGAGCACCTGCCGCCTGCTGTGGCTGGCCTGCGAGACGGCGATCATC 
GCCTGCGACCTGGCCGAGGTGATCGGCACCGCCATCGCCCTGAAGCTGCTGTTCGGCCTGCCGCTGGCCTGG 
GGCGCGTTGCTCTGCGTGGGCGACGCGCTGCTGGTGCTGGTCCTGATCGGACGTGGCCAGCGGCCGCTGGAG 
GCCTTCGTGGTGGCGTTGCTGACACTGATCTTCGCCTGCTTCGCGGTACAGTTGCTGCTCTCGCGTCCCGAA 
CTCGGCGAGGTGCTCCAAGGGTTCTTGCCGAGCCCGCGGGTGCTCAGCGATCCGGCTGCCCTGTACCTGGCG 
ATCGGCATCGTCGGCGCGACCGTCATGCCGCACAACCTCTACCTGCATTCCTCGCTGGTGCAGAGCCGCGCC 
TACCCACGCAGCCTCGCCGGCAAGCGCCAGGCGCTGCGCTGGGCGGTGGCCGACAGCAGCCTGGCGCTGACC 
CTGGCGCTGCTGGTCAACGCGGCGATCCTGATCGTCGCCGCCAGCGTGTTCCACCGCAACGGGCACACCGAA 
GTGGTCGATATCGAGCAGGCCCACGCGCTGCTCTCGCCATTGCTCGGCCTGGAACTCGCCTCGCTGCTGTTC 
GCCGTGGCGCTGCTCGCGTCCGGCCTCAACTCGACGGTCACCACCACCCTGGCCGGGCAGATCGTCATGGAG 
GGCTTCCTCCGCCTGCGCCTGGCGCCCTGGGCGCGGCGCCTGCTGACCCGTGGCGTCGCGGTGCTGCCGGTG 
CTGCTGGTGACCCTGCTCTACGGCGAGGACGGCACCGCGCGGCTGCTGATCTTCAGCCAGGTGATCCTGTCG 
ATGCAGTTGCCGCTGGCGGTGATCCCGCTGCTACAGTTCGTTTCTGACCGGCGCCTGATGGGCCCGCTGGCG 
ATCGGCGCCGGGACCCGGTGGCTGGCCTGGGCGGTAGCGCTGGCGATCGTCGGCCTGAACCTGCAACTGCTG 
GCCGACTTCGCGTTCGGCTGA