ViewGene

Locus Name:
GeneID:
Location:

GeneID:1290
TrivialName: PA14_25350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25350
PAO1 Ortholog Locus:PA2994
Sequence Length:1224
Protein Length:407
Start: 2216466
Stop: 2217689
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06382.1|AE004724_11 (AE004724) Na+-translocating NADH:quinone oxidoreductase, subunit Nqr6 [Pseudomonas aeruginosa PAO1]
Identities = 405/407 (99%), Positives = 406/407 (99%)
Sequence:
GTGATCGGATTCGAGATTTTCCTGGCCATCGGCATGTTCACCGCCATCGTCCTGGGCCTGGTGGCGATCATC
CTGGTCGCCCGCGCCAAGCTGGTGTCGAGTGGCGACGTGACCATCCAGATCAACGGCGAGCACAGCCTGACC
GTGCCGGCCGGCGGCAAGCTGCTGCAAACCCTGGCGACGAACAACGTGTTCCTGTCTTCCGCCTGCGGCGGC
GGCGGCACCTGCGCGCAGTGCAAGTGCGTGGTGGTCGAGGGCGGCGGCGAGATGCTGCCCACCGAGGAGTCG
CACTTCACCCGGCGCCAGGCGAAGGAGGGCTGGCGCCTGTCGTGCCAGACCCCGGTCAAGCAGGACATGCAG
ATCCGCGTGCCTGAAGAGGTCTTCGGGGTGAAGAAGTGGGAATGCACGGTGGAGTCCAACCCCAACGTCGCC
ACCTTCATCAAGGAACTCACCCTGCGCCTGCCGGACGGCGAGAGCGTGGATTTCCGCGCCGGCGGCTACGTG
CAGCTGGAATGCCCGCCGCACGTGGTCGAGTACAAGGACTTCGATATCCAGCCGGAATATCGCGGCGACTGG
GACAAGTTCAACATGTGGCGCTACGTGTCGAAGGTCGACGAGACGGTGATCCGCGCCTACTCGATGGCCAAC
TACCCGGAAGAGCAGGGCGTGGTCAAGTTCAACATCCGCATCGCCTCGCCACCGCCGGGCAGCGACCTGCCG
CCGGGGCAGATGTCGTCCTGGGTGTTCAACCTCAAGCCGGGCGACAAGGTCACCGTGTACGGGCCGTTCGGC
GAGTTCTTCGCCAAGGACACCGAGGCCGAGATGGTCTTCATCGGCGGCGGCGCCGGCATGGCGCCGATGCGT
TCGCACATCTTCGACCAGTTGCGCCGGCTCAAGTCGAACCGCAAGATCAGCTTCTGGTACGGCGCGCGCTCG
CTACGCGAGGCCTTCTATACCGAGGAGTACGACCAGCTGCAGGCGGAGAACCCCAACTTCCAGTGGCACCTG
GCGCTGTCCGACCCGCAGCCGGAGGACAACTGGACCGGCCTGACCGGCTTCATCCACAACGTGCTGTTCGAG
AACTACCTGAAGGACCACCCGGCGCCCGAGGACTGCGAGTTCTACATGTGCGGCCCGCCGATGATGAATGCC
GCGGTGATCAAGATGCTCACCGACCTGGGCGTGGAGCGCGAGAATATCCTGCTGGACGATTTCGGTGGCTGA
Translation:
MIGFEIFLAIGMFTAIVLGLVAIILVARAKLVSSGDVTIQINGEHSLTVPAGGKLLQTLATNNVFLSSACGG
GGTCAQCKCVVVEGGGEMLPTEESHFTRRQAKEGWRLSCQTPVKQDMQIRVPEEVFGVKKWECTVESNPNVA
TFIKELTLRLPDGESVDFRAGGYVQLECPPHVVEYKDFDIQPEYRGDWDKFNMWRYVSKVDETVIRAYSMAN
YPEEQGVVKFNIRIASPPPGSDLPPGQMSSWVFNLKPGDKVTVYGPFGEFFAKDTEAEMVFIGGGAGMAPMR
SHIFDQLRRLKSNRKISFWYGARSLREAFYTEEYDQLQAENPNFQWHLALSDPQPEDNWTGLTGFIHNVLFE
NYLKDHPAPEDCEFYMCGPPMMNAAVIKMLTDLGVERENILLDDFGG*
AnnotationID:1299GeneID:1290
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 13:01:27
Gene Name:nqrF
Confidence Code:2
GeneProduct:Na+-translocating NADH:quinone oxidoreductase, subunit 6
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:NADH-uniquinone oxidoreductase subunit F
Functional Category Confidence Code:5
COGs:COG2871
Secondary Functional Category(ies):
EC Number:1.6.5.-
Status:ACTIVE
Pathway:
Homology:
>emb|CAB84030.1| (AL162754) putative Na(+)-translocating NADH-ubiquinone reductase
           subunit F [Neisseria meningitidis Z2491]
          Length = 405

 Score =  619 bits (1596), Expect = e-176
 Identities = 289/404 (71%), Positives = 338/404 (83%), Gaps = 1/404 (0%)

>gb|AAC21841.1| (U32702) Nqr6 subunit of Na-translocating NADH-quinone reductase
           complex beta-subunit (nqr6) [Haemophilus influenzae Rd]
          Length = 411

 Score =  611 bits (1575), Expect = e-174
 Identities = 289/403 (71%), Positives = 339/403 (84%), Gaps = 3/403 (0%)

>emb|CAC92470.1| (AJ414156) NADH-uniquinone oxidoreductase subunit F [Yersinia
           pestis CO92]
          Length = 407

 Score =  607 bits (1565), Expect = e-173
 Identities = 282/406 (69%), Positives = 339/406 (83%), Gaps = 3/406 (0%)

Structural Features:
COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, 
subunit NqrF 
[Energy production and conversion]
CD-Length = 410 residues, 100.0% aligned
Score =  752 bits (1944), Expect = 0.0
Identities = 307/410 (74%), Positives = 351/410 (85%), Gaps = 3/410 (0%)
Genomic Context:
Comment:
ReferenceID:14325
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19725
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36061
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1290_cdd.html
URL:
ReferenceID:36454
Author/Investigator(s): Hayashi M, Hirai K, Unemoto T.
Title: Sequencing and the alignment of structural genes in the nqr operon encoding the Na(+)-translocating NADH-quinone reductase from Vibrio alginolyticus.
PubMed: 7729558
MedLine:
Source:
FEBS Lett. 1995 Apr 17;363(1-2):75-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95246889&dopt=Abstract
ReferenceID:36461
Author/Investigator(s): Barquera B, Hellwig P, Zhou W, Morgan JE, Hase CC, Gosink KK, Nilges M, Bruesehoff PJ, Roth A, Lancaster CR, Gennis RB.
Title: Purification and characterization of the recombinant Na(+)-translocating NADH:quinone oxidoreductase from Vibrio cholerae.
PubMed: 11888296
MedLine:
Source:
Biochemistry. 2002 Mar 19;41(11):3781-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11888296
ReferenceID:36462
Author/Investigator(s): Rich PR, Meunier B, Ward FB.
Title: Predicted structure and possible ionmotive mechanism of the sodium-linked NADH-ubiquinone oxidoreductase of Vibrio alginolyticus.
PubMed: 7498478
MedLine:
Source:
FEBS Lett. 1995 Nov 13;375(1-2):5-10.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7498478
Homologs By Global Alignment
Gene ID:1290

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2351 PA2994_tr translation of PA2994 407 99.50 99.75 0 2174.0
75495 gb|AAG06382.1|AE004724_11 (AE004724) Na+-translocating NADH:quinone oxidoreductase, subunit Nqr6 [Pseudomonas aeruginosa PAO1] 407 99.26 99.75 0 2171.0
75496 emb|CAB84030.1| (AL162754) putative Na(+)-translocating NADH-ubiquinone reductase subunit F [Neisseria meningitidis Z2491] 408 70.83 82.84 4 1598.0
75497 gb|AAF40992.1| (AE002412) Na(+)-translocating NADH-quinone reductase, subunit F [Neisseria meningitidis MC58] 408 70.83 82.84 4 1598.0
75498 gb|AAK03417.1| (AE006171) Nqr6 [Pasteurella multocida] 410 70.48 83.17 6 1590.0
GC ORFID: 44292How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2994Glimmer Score:
Start: 2737459Stop: 2736236
Length: 1224
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2994 translation of PA2994Homolog Bit Score 842.0
Other Homologs: t_PA2994 (ORF: GLIMMER)
GC ORF Sequence
GTGATCGGATTCGAGATTTTCCTGGCCATCGGCATGTTCACCGCCATCGTCCTGGGCCTGGTGGCGATCATC
CTGGTCGCCCGCGCCAAGCTGGTGTCGAGTGGCGACGTGACCATCCAGATCAACGGCGAGCACAGCCTGACC
GTGCCGGCCGGCGGCAAGCTGCTGCAAACCCTGGCGACGAACAACGTGTTCCTGTCTTCCGCCTGCGGCGGC
GGCGGCACCTGCGCGCAGTGCAAGTGCGTGGTGGTCGAGGGCGGCGGCGAGATGCTGCCCACCGAGGAGTCG
CACTTCACCCGGCGCCAGGCGAAGGAGGGCTGGCGCCTGTCGTGCCAGACCCCGGTCAAGCAGGACATGCAG
ATCCGCGTGCCTGAAGAGGTCTTCGGGGTGAAGAAGTGGGAATGCACGGTGGAGTCCAACCCCAACGTCGCC
ACCTTCATCAAGGAACTCACCCTGCGCCTGCCGGACGGCGAGAGCGTGGATTTCCGCGCCGGCGGCTACGTG
CAGCTGGAATGCCCGCCGCACGTGGTCGAGTACAAGGACTTCGATATCCAGCCGGAATATCGCGGCGACTGG
GACAAGTTCAACATGTGGCGCTACGTGTCGAAGGTCGACGAGACGGTGATCCGCGCCTACTCGATGGCCAAC
TACCCGGAAGAGCAGGGCGTGGTCAAGTTCAACATCCGCATCGCCTCGCCACCGCCGGGCAGCGACCTGCCG
CCGGGGCAGATGTCGTCCTGGGTGTTCAACCTCAAGCCGGGCGACAAGGTCACCGTGTACGGGCCGTTCGGC
GAGTTCTTCGCCAAGGACACCGAGGCCGAGATGGTCTTCATCGGCGGCGGCGCCGGCATGGCGCCGATGCGT
TCGCACATCTTCGACCAGTTGCGCCGGCTCAAGTCGAACCGCAAGATCAGCTTCTGGTACGGCGCGCGCTCG
CTACGCGAGGCCTTCTATACCGAGGAGTACGACCAGCTGCAGGCGGAGAACCCCAACTTCCAGTGGCACCTG
GCGCTGTCCGACCCGCAGCCGGAGGACAACTGGACCGGCCTGACCGGCTTCATCCACAACGTGCTGTTCGAG
AACTACCTGAAGGACCACCCGGCGCCCGAGGACTGCGAGTTCTACATGTGCGGCCCGCCGATGATGAATGCC
GCGGTGATCAAGATGCTCACCGACCTGGGCGTGGAGCGCGAGAATATCCTGCTGGACGATTTCGGTGGCTGA