ViewGene
Locus Name:
GeneID:
Location:

GeneID:129
TrivialName: PA14_30590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30590
PAO1 Ortholog Locus:PA2590
Sequence Length:2655
Protein Length:884
Start: 2648473
Stop: 2651127
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05978.1|AE004687_7 (AE004687) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 875/884 (98%), Positives = 879/884 (99%)
Sequence:
ATGCCCGATGTACGTCTTTCCTCTCGTTCGTTGACCCCCGTGCTCTGTGCGGTGGGGCTCGCCTGCGCGCTG
CAGGGCGAGGTGCAGGCCGCCGACGGTGGGCCGCGCGACGCGGCCACGGCGCCCCGGGTATTCGACATAGCG
CCCGGCGAACTGGCCGAGGTGTTGTTGAACATCGTGCGCCAGGGACACGTGCCGATCGCCTTCGACCAGCGC
CTGGTGGCGGGGTTGCGCGGACCGGATATCCGCGGCCGGCTCAGTGTCGAGGACGCCTTGCGGCGTGCCCTG
GCCGGCAGCGGGCTGGCATACGCGCAGGACGAAAGCGGTGCCTTCGTCCTGCGCGGCGGACAGGCGCCTGTG
CAGGAGACGCGAGGTGCGGCGGCGGCACCGACCTTGTCCACCGTGGTGGTCACCGGCACGCGCAAGAGCGAT
GTGAAGGCGCAGGACAGCCTGAGCCCGATCGATGTGGTCAGCGCTACCCAGCTACGCAGCAGCGGCGCGGTC
GACCTGCGCGATGCACTGGTCAAACTGCTGCCCTCGCTGACCCGCCAGGCCCAGCCGTTCAACGCCTCGGCG
TTGACCCACACGCAGTCGCTGCGCGGGCTGAGCCCCAACCATGTGCTGGTGCTGGTGAACGGCAAGCGTCGC
CACGAAACGGCCAATCTCAATATCAGCGGGGGGCTGGAGAAGGGCTCCACCGGCGTCGATCTGGACACCATC
CCGATCAACGCCATCGAGCGGGTCGAGGTGCTGCGCGACGGTGCTTCGGCACAGTATGGTTCGGACGCCATC
GCCGGGGTGATCAACGTCATCCTCAAGTCCGCCGACCACGGCGGGTCGGCGGCCGCTGACGTCGGGCAGACC
GGCGACGGCGACGGCTTCACCCATGGCGGCGGGGGGAACATCGGACTGGCCTTCGGCGATAGCGGCTTCGTC
AACCTCACCGCCGAATATCGCGAGCAGGAGCGCACGATGCGCAGCGGCATCGATGAGCGCACCGGTCGGCGC
GACAACATTTCCATGGGCGATCCCGCGTTCCACCGGCAATCGTTGGCGCTCAACTCCGGTTTCGGGTTGGGC
GACGATATCGAGGTGTACGGCTTCGGCACCTATACTCGGCGCAAGGCCTCCTCGGCGGCCAACTATCGCCTG
GCTTCGGTGGCGCCGACGCTGTATCCGGACGGCTTCACGCCGCGCCCGAACAGCGACGAGGACGACTATGCG
TTCCTCGCCGGGGTGCGCGGCGAGCGTCTGCTGGATGCCTGGCACTGGGACCTGAGCAGTGGCTACGGCGCC
GACCGTCCCGATATCGGCATGACCCAGTCGGTGAACGCGGCGATCTACCGTGAAACCGGCAACAGCCCGAGA
AGCTTCGACCTGGCGCACTACCGCAACAGCCAATGGACCAGCAACCTGGACCTGGGGCGGGAATTCCAACTG
GATTTCCTCGCCGCCCCGCTGGCGCTGTCGCTGGGCGCGGAATACCGGCGGGAAACCTACCGCATCGACGCC
GGCGACCCGGCGTCCTACTACAGCGGCGGGGCGGAATCCCTGGCTGGCCTCTCGCCGCTCAGCGAGGGGCAA
TGGTCGCGGCACGCCTGGGCGTCCTACCTGGACCTGGGTACCTCCCTGACCCCAGCCTGGGAGGTTGACGTG
GCGGTGCGCCACGAGAAATTCAGCGACTTCGGCAGCACCACCAACGGCAAGTTCGCCACCCGTTACCAGTTC
GATCCGCGGGTGGCGCTGCGCGCCAGCGTAAGCAGCGGGTTCCGCGCGCCGTCCCTGGTCCAGGAGCACTAC
ACCGGCCTCAGCGTCGGCCCGACCATCGCCCTCGGCCTGCTGGCGGCCAACTCGCCGGCAGCGAAGATGCTC
GGCGCCGACGAACTGCAACCGGAGAAGTCGACCAGCTTCAACCTTGGCCTGGTACTCAACCCTTGGGAAAAC
GTCGGGCTGAACATCGACGCCTACCAGATCAGCATCCGCGACCGCATCGTCGACAGCGCCACCTATTCCGGC
CAGGAAGCCATCGATGCCCTGGCCGCGGCGGGGATCTCGTTGCCGGCCAGTGCCAGTACGGTCAGTACCCAT
TACCTGGCCAACGGTGCCGACACCCGCACCCGCGGTGTCGACATCACCGGTCACTACCTCGTCGCGCTTGGC
GAGTACGGGCAGGTCGACTGGGAACTGTCGGCCAACTTCAACCGCACCACCTTGCGCAAGAACCATCGAGGC
GCCAACGGCGAGCCGCTGCTCAATGCCCAGCAGGTCGCCTGGATCACCAGCTCCACCCCGCGCAGCCAGGTT
TCCCTCGGCGGCACCTGGAGCCGCCAGGACTGGGAGGTCAGCCTGCGCCTGACGCGCTACGGTCGGACCAGC
TCGGAACTCGACTACACGGTAGGGCCGGACGCCTGGTCGACGGAGAAATTCAACCATTTCGTCAACGACCCG
AAGTACATCACCGACATCGCCGCGCGCTACCGGCTCAGCGCCGACCTGACGCTGACCGCCGGCGCCGACAAC
CTGTTCGACGTCCGTCCGGACAAGCTGCCCGCGCAGAACACCACCTATGGCGACGTGCTGCGCTACGACACC
TATGCCTCGCAGATCGGCTTCAACGGCGCCTTCTACTACCTGCGCGCGGCCTACCGCTTCTAG
Translation:
MPDVRLSSRSLTPVLCAVGLACALQGEVQAADGGPRDAATAPRVFDIAPGELAEVLLNIVRQGHVPIAFDQR
LVAGLRGPDIRGRLSVEDALRRALAGSGLAYAQDESGAFVLRGGQAPVQETRGAAAAPTLSTVVVTGTRKSD
VKAQDSLSPIDVVSATQLRSSGAVDLRDALVKLLPSLTRQAQPFNASALTHTQSLRGLSPNHVLVLVNGKRR
HETANLNISGGLEKGSTGVDLDTIPINAIERVEVLRDGASAQYGSDAIAGVINVILKSADHGGSAAADVGQT
GDGDGFTHGGGGNIGLAFGDSGFVNLTAEYREQERTMRSGIDERTGRRDNISMGDPAFHRQSLALNSGFGLG
DDIEVYGFGTYTRRKASSAANYRLASVAPTLYPDGFTPRPNSDEDDYAFLAGVRGERLLDAWHWDLSSGYGA
DRPDIGMTQSVNAAIYRETGNSPRSFDLAHYRNSQWTSNLDLGREFQLDFLAAPLALSLGAEYRRETYRIDA
GDPASYYSGGAESLAGLSPLSEGQWSRHAWASYLDLGTSLTPAWEVDVAVRHEKFSDFGSTTNGKFATRYQF
DPRVALRASVSSGFRAPSLVQEHYTGLSVGPTIALGLLAANSPAAKMLGADELQPEKSTSFNLGLVLNPWEN
VGLNIDAYQISIRDRIVDSATYSGQEAIDALAAAGISLPASASTVSTHYLANGADTRTRGVDITGHYLVALG
EYGQVDWELSANFNRTTLRKNHRGANGEPLLNAQQVAWITSSTPRSQVSLGGTWSRQDWEVSLRLTRYGRTS
SELDYTVGPDAWSTEKFNHFVNDPKYITDIAARYRLSADLTLTAGADNLFDVRPDKLPAQNTTYGDVLRYDT
YASQIGFNGAFYYLRAAYRF*
AnnotationID:139GeneID:129
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 08:08:19
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane receptor protein
Cell Localization:()
Synonyms:PA2590
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00593,COG1629,COG4771,COG4206
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56503.1| (AE016866) TonB-dependent sideophore receptor, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 821

 Score =  478 bits (1230), Expect = e-134
 Identities = 316/814 (38%), Positives = 441/814 (54%), Gaps = 65/814 (7%)

>gb|AAM38010.1| (AE011961) ferric enterobactin receptor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 795

 Score =  467 bits (1201), Expect = e-130
 Identities = 308/797 (38%), Positives = 434/797 (54%), Gaps = 59/797 (7%)






 
Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  168 bits (426), Expect = 3e-42
Identities = 155/803 (19%), Positives = 234/803 (29%), Gaps = 157/803 (19%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  98.7% aligned
Score =  154 bits (388), Expect = 4e-38
Identities = 153/830 (18%), Positives = 242/830 (29%), Gaps = 108/830 (13%)

COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins 
[Inorganic ion transport and metabolism]
CD-Length = 699 residues,  95.9% aligned
Score =  142 bits (359), Expect = 2e-34
Identities = 166/781 (21%), Positives = 288/781 (36%), Gaps = 135/781 (17%)

COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]
CD-Length = 608 residues,  93.1% aligned
Score =  132 bits (334), Expect = 1e-31
Identities = 146/725 (20%), Positives = 231/725 (31%), Gaps = 166/725 (22%)






   
Genomic Context:






   
Comment:


















    ReferenceID:261




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17403




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33152




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:129_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:129
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
239
                           PA2590_tr
                           translation of PA2590
                           884
                           98.98
                           99.43
                           0
                           4498.0
     

     
     
17035
                           gb|AAG05978.1|AE004687_7
                           (AE004687) hypothetical protein PA2590 [Pseudomonas aeruginosa PAO1]
                           884
                           98.98
                           99.43
                           0
                           4498.0
     

     
     
240
                           PA2089_tr
                           translation of PA2089
                           885
                           64.51
                           76.61
                           3
                           2889.0
     

     
     
17036
                           gb|AAG05477.1|AE004636_8
                           (AE004636) hypothetical protein PA2089 [Pseudomonas aeruginosa PAO1]
                           885
                           64.51
                           76.61
                           3
                           2889.0
     

     






      

          
GC ORFID: 43131How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2590Glimmer Score: 

          
Start: 2305453Stop: 2302799

          
Length: 2655


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2590 translation of PA2590Homolog Bit Score 1737.0

          
Other Homologs:  t_PA2089 (ORF: BLASTX 1115.0), t_PA2590 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGATGTACGTCTTTCCTCTCGTTCGTTGACCCCCGTGCTCTGTGCGGTGGGGCTCGCCTGCGCGCTG 
CAGGGCGAGGTGCAGGCCGCCGACGGTGGGCCGCGCGACGCGGCCACGGCGCCCCGGGTATTCGACATAGCG 
CCCGGCGAACTGGCCGAGGTGTTGTTGAACATCGTGCGCCAGGGACACGTGCCGATCGCCTTCGACCAGCGC 
CTGGTGGCGGGGTTGCGCGGACCGGATATCCGCGGCCGGCTCAGTGTCGAGGACGCCTTGCGGCGTGCCCTG 
GCCGGCAGCGGGCTGGCATACGCGCAGGACGAAAGCGGTGCCTTCGTCCTGCGCGGCGGACAGGCGCCTGTG 
CAGGAGACGCGAGGTGCGGCGGCGGCACCGACCTTGTCCACCGTGGTGGTCACCGGCACGCGCAAGAGCGAT 
GTGAAGGCGCAGGACAGCCTGAGCCCGATCGATGTGGTCAGCGCTACCCAGCTACGCAGCAGCGGCGCGGTC 
GACCTGCGCGATGCACTGGTCAAACTGCTGCCCTCGCTGACCCGCCAGGCCCAGCCGTTCAACGCCTCGGCG 
TTGACCCACACGCAGTCGCTGCGCGGGCTGAGCCCCAACCATGTGCTGGTGCTGGTGAACGGCAAGCGTCGC 
CACGAAACGGCCAATCTCAATATCAGCGGGGGGCTGGAGAAGGGCTCCACCGGCGTCGATCTGGACACCATC 
CCGATCAACGCCATCGAGCGGGTCGAGGTGCTGCGCGACGGTGCTTCGGCACAGTATGGTTCGGACGCCATC 
GCCGGGGTGATCAACGTCATCCTCAAGTCCGCCGACCACGGCGGGTCGGCGGCCGCTGACGTCGGGCAGACC 
GGCGACGGCGACGGCTTCACCCATGGCGGCGGGGGGAACATCGGACTGGCCTTCGGCGATAGCGGCTTCGTC 
AACCTCACCGCCGAATATCGCGAGCAGGAGCGCACGATGCGCAGCGGCATCGATGAGCGCACCGGTCGGCGC 
GACAACATTTCCATGGGCGATCCCGCGTTCCACCGGCAATCGTTGGCGCTCAACTCCGGTTTCGGGTTGGGC 
GACGATATCGAGGTGTACGGCTTCGGCACCTATACTCGGCGCAAGGCCTCCTCGGCGGCCAACTATCGCCTG 
GCTTCGGTGGCGCCGACGCTGTATCCGGACGGCTTCACGCCGCGCCCGAACAGCGACGAGGACGACTATGCG 
TTCCTCGCCGGGGTGCGCGGCGAGCGTCTGCTGGATGCCTGGCACTGGGACCTGAGCAGTGGCTACGGCGCC 
GACCGTCCCGATATCGGCATGACCCAGTCGGTGAACGCGGCGATCTACCGTGAAACCGGCAACAGCCCGAGA 
AGCTTCGACCTGGCGCACTACCGCAACAGCCAATGGACCAGCAACCTGGACCTGGGGCGGGAATTCCAACTG 
GATTTCCTCGCCGCCCCGCTGGCGCTGTCGCTGGGCGCGGAATACCGGCGGGAAACCTACCGCATCGACGCC 
GGCGACCCGGCGTCCTACTACAGCGGCGGGGCGGAATCCCTGGCTGGCCTCTCGCCGCTCAGCGAGGGGCAA 
TGGTCGCGGCACGCCTGGGCGTCCTACCTGGACCTGGGTACCTCCCTGACCCCAGCCTGGGAGGTTGACGTG 
GCGGTGCGCCACGAGAAATTCAGCGACTTCGGCAGCACCACCAACGGCAAGTTCGCCACCCGTTACCAGTTC 
GATCCGCGGGTGGCGCTGCGCGCCAGCGTAAGCAGCGGGTTCCGCGCGCCGTCCCTGGTCCAGGAGCACTAC 
ACCGGCCTCAGCGTCGGCCCGACCATCGCCCTCGGCCTGCTGGCGGCCAACTCGCCGGCAGCGAAGATGCTC 
GGCGCCGACGAACTGCAACCGGAGAAGTCGACCAGCTTCAACCTTGGCCTGGTACTCAACCCTTGGGAAAAC 
GTCGGGCTGAACATCGACGCCTACCAGATCAGCATCCGCGACCGCATCGTCGACAGCGCCACCTATTCCGGC 
CAGGAAGCCATCGATGCCCTGGCCGCGGCGGGGATCTCGTTGCCGGCCAGTGCCAGTACGGTCAGTACCCAT 
TACCTGGCCAACGGTGCCGACACCCGCACCCGCGGTGTCGACATCACCGGTCACTACCTCGTCGCGCTTGGC 
GAGTACGGGCAGGTCGACTGGGAACTGTCGGCCAACTTCAACCGCACCACCTTGCGCAAGAACCATCGAGGC 
GCCAACGGCGAGCCGCTGCTCAATGCCCAGCAGGTCGCCTGGATCACCAGCTCCACCCCGCGCAGCCAGGTT 
TCCCTCGGCGGCACCTGGAGCCGCCAGGACTGGGAGGTCAGCCTGCGCCTGACGCGCTACGGTCGGACCAGC 
TCGGAACTCGACTACACGGTAGGGCCGGACGCCTGGTCGACGGAGAAATTCAACCATTTCGTCAACGACCCG 
AAGTACATCACCGACATCGCCGCGCGCTACCGGCTCAGCGCCGACCTGACGCTGACCGCCGGCGCCGACAAC 
CTGTTCGACGTCCGTCCGGACAAGCTGCCCGCGCAGAACACCACCTATGGCGACGTGCTGCGCTACGACACC 
TATGCCTCGCAGATCGGCTTCAACGGCGCCTTCTACTACCTGCGCGCGGCCTACCGCTTCTAG