ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1289

TrivialName: PA14_37460

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37460

PAO1 Ortholog Locus: PA2091

Sequence Length: 1284

Protein Length: 427

Start: 3334634

Stop: 3333351

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05479.1|AE004636_10 (AE004636) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 424/427 (99%), Positives = 425/427 (99%)

Sequence:

ATGAGCGGCGTCGCCCGCGAGGCCATGGAGGACGTCGCGCCGGCGGCGCCTGGCGTCGGCGAGTTCGGCGTG
GCCAGTTGTGGGGTGCTGCTGGCCTCGGTAGTGGGGGTGATCTTCGGCCCCACCGGGCTGGTGATCAGCAGC
TTTTCGCTGTTCATCGAGCCGATCGCCGCCGACCTGGACTGGGACCGTGGCCAGTCGGCACTGCCGGTGACC
CTGCTGGGCCTGGCGGTAGCCCTGAGCAGCCCGCTGAAGGGCTGGCTGGTGGATCGCTGGGGCGCGCGCGCC
CTGGTCCTGCCGCTGACCGCCGCGCTGGCCCTGTGCCTGGCCAGCCTGGCGCTGGCGCGCAGCGGCTGGCAG
CTATACCTGCTGTTCGCGCTGCTCGGCCTGCTGACGCCGGGCAACATTCCCTATGCGCGGATTCTCGGCGGC
TGGTTCGAGCGTCGTCGCGGCGCAGCCTACGGCATCCTCGGACTCGGCTTCGGCGTCGGCGGGCCACTGGCG
CTGTACCTGGGCAGCGCCTGCATCGACGCCTTCGGCTGGCGTGCCACCTTCCTCGTCTATGGCCTGCTCGAA
GGCCTGCTGGCGCTGCCGCTGCTCTACGCGTTGTTCCGCGAGCGGCCCGGCGACCTGCCGCAGGCGCGGCGC
CCGCCAGCCGGCGCGCTGCCCGGAGCGACGCCAGGCCAGGCCTGGCGCTCGGCGGACTTCTGGCTGATCGTC
GGCAACCTGATCCTCGGCGTGTTCGCCGTCACCGGCGTGATGGTGCATGGCGTGCCGCTGTTGCAGGAGCGC
GGCCTGTCGCGGGAGGTCGCCACCGATGTGCTGGCGGCGCTGTGGGTCGGCATGATCGTTTCGCAACCGGCG
CTGGGCTACCTGCTGGACCGCTACGACACCCCGCGCATCGCCTTGCCGTTCGCCCTGCTGGCGGCTATCGGG
CTGCTGCTCCTGCTCCTCGGCGGACCGCCGGCGCTGCTCTGGGGCGCGGTGTTCCTGATCGGCCTGGGCGCC
GGCGGCGAGACCGGCACCACCCAGTACTTCGTCAGCCGCTACTTCGGCCTGCGCCATTTCAGCGTGATCTAT
GGCTCGATCCAGCCCTTCACCTTCGCCATCGCCATCAGCCTGGGGTCCTGGCTGCTGGGTTACTTCTACGAC
CGCGCGGGCTCCTACGCGGGCTCGACGCTGGTCCTGCTCGGCGCGTTCGGCGTGGCGGCAGGGCTGCTGGTC
ATGCTCGGGCGCTATCGCTATGCCATCGACGGGGAGGCACGCAGCCATGGGCGAGACTGA

Translation:

MSGVAREAMEDVAPAAPGVGEFGVASCGVLLASVVGVIFGPTGLVISSFSLFIEPIAADLDWDRGQSALPVT
LLGLAVALSSPLKGWLVDRWGARALVLPLTAALALCLASLALARSGWQLYLLFALLGLLTPGNIPYARILGG
WFERRRGAAYGILGLGFGVGGPLALYLGSACIDAFGWRATFLVYGLLEGLLALPLLYALFRERPGDLPQARR
PPAGALPGATPGQAWRSADFWLIVGNLILGVFAVTGVMVHGVPLLQERGLSREVATDVLAALWVGMIVSQPA
LGYLLDRYDTPRIALPFALLAAIGLLLLLLGGPPALLWGAVFLIGLGAGGETGTTQYFVSRYFGLRHFSVIY
GSIQPFTFAIAISLGSWLLGYFYDRAGSYAGSTLVLLGAFGVAAGLLVMLGRYRYAIDGEARSHGRD*

AnnotationID:1298 GeneID:1289

AnnotatorUID: diggins

Modification Date/Time: 2005-03-03 07:07:09

Gene Name:

Confidence Code: 3

GeneProduct: putative permease

Cell Localization: ()

Synonyms: PA2091

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2814,COG2271

Secondary Functional Category(ies): carbohydrate transport and metabolism

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  95.7% aligned
Score = 92.6 bits (230), Expect = 9e-20
Identities = 108/392 (27%), Positives = 151/392 (38%), Gaps = 18/392 (4%)

COG2271, UhpC, Sugar phosphate permease 
[Carbohydrate transport and metabolism]
CD-Length = 448 residues,  88.2% aligned
Score = 71.4 bits (175), Expect = 2e-13
Identities = 94/409 (22%), Positives = 153/409 (37%), Gaps = 52/409 (12%)

Genomic Context:

Comment:

ReferenceID:2581

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19723

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32615

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1289_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1289

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2349 PA2091_tr translation of PA2091 427 99.29 99.53 0 2174.0

75493 gb|AAG05479.1|AE004636_10 (AE004636) hypothetical protein PA2091 [Pseudomonas aeruginosa PAO1] 427 99.29 99.53 0 2174.0

2350 PA2589_tr translation of PA2589 433 54.96 68.12 35 1197.0

75494 gb|AAG05977.1|AE004687_6 (AE004687) hypothetical protein PA2589 [Pseudomonas aeruginosa PAO1] 433 54.96 68.12 35 1197.0

GC ORFID: `44291`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2091`	Glimmer Score:
Start: `1619280`	Stop: `1620563`
Length: `1284`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2091 translation of PA2091`	Homolog Bit Score `842.0`
Other Homologs: `t_PA2589 (ORF: BLASTX 467.0), t_PA2091 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGGCGTCGCCCGCGAGGCCATGGAGGACGTCGCGCCGGCGGCGCCTGGCGTCGGCGAGTTCGGCGTG GCCAGTTGTGGGGTGCTGCTGGCCTCGGTAGTGGGGGTGATCTTCGGCCCCACCGGGCTGGTGATCAGCAGC TTTTCGCTGTTCATCGAGCCGATCGCCGCCGACCTGGACTGGGACCGTGGCCAGTCGGCACTGCCGGTGACC CTGCTGGGCCTGGCGGTAGCCCTGAGCAGCCCGCTGAAGGGCTGGCTGGTGGATCGCTGGGGCGCGCGCGCC CTGGTCCTGCCGCTGACCGCCGCGCTGGCCCTGTGCCTGGCCAGCCTGGCGCTGGCGCGCAGCGGCTGGCAG CTATACCTGCTGTTCGCGCTGCTCGGCCTGCTGACGCCGGGCAACATTCCCTATGCGCGGATTCTCGGCGGC TGGTTCGAGCGTCGTCGCGGCGCAGCCTACGGCATCCTCGGACTCGGCTTCGGCGTCGGCGGGCCACTGGCG CTGTACCTGGGCAGCGCCTGCATCGACGCCTTCGGCTGGCGTGCCACCTTCCTCGTCTATGGCCTGCTCGAA GGCCTGCTGGCGCTGCCGCTGCTCTACGCGTTGTTCCGCGAGCGGCCCGGCGACCTGCCGCAGGCGCGGCGC CCGCCAGCCGGCGCGCTGCCCGGAGCGACGCCAGGCCAGGCCTGGCGCTCGGCGGACTTCTGGCTGATCGTC GGCAACCTGATCCTCGGCGTGTTCGCCGTCACCGGCGTGATGGTGCATGGCGTGCCGCTGTTGCAGGAGCGC GGCCTGTCGCGGGAGGTCGCCACCGATGTGCTGGCGGCGCTGTGGGTCGGCATGATCGTTTCGCAACCGGCG CTGGGCTACCTGCTGGACCGCTACGACACCCCGCGCATCGCCTTGCCGTTCGCCCTGCTGGCGGCTATCGGG CTGCTGCTCCTGCTCCTCGGCGGACCGCCGGCGCTGCTCTGGGGCGCGGTGTTCCTGATCGGCCTGGGCGCC GGCGGCGAGACCGGCACCACCCAGTACTTCGTCAGCCGCTACTTCGGCCTGCGCCATTTCAGCGTGATCTAT GGCTCGATCCAGCCCTTCACCTTCGCCATCGCCATCAGCCTGGGGTCCTGGCTGCTGGGTTACTTCTACGAC CGCGCGGGCTCCTACGCGGGCTCGACGCTGGTCCTGCTCGGCGCGTTCGGCGTGGCGGCAGGGCTGCTGGTC ATGCTCGGGCGCTATCGCTATGCCATCGACGGGGAGGCACGCAGCCATGGGCGAGACTGA