ViewGene

Locus Name:
GeneID:
Location:

GeneID:1288
TrivialName: PA14_49130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49130
PAO1 Ortholog Locus:PA1183
Sequence Length:1311
Protein Length:436
Start: 4364500
Stop: 4363190
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04572.1|AE004548_6 (AE004548) C4-dicarboxylate transport protein [Pseudomonas aeruginosa PAO1]
Identities = 436/436 (100%), Positives = 436/436 (100%)
Sequence:
ATGACCAAACAACCCTTCTACAAGAGCCTGTACGTGCAGGTTCTGGTCGCCATCGCCATCGGTATCGCGCTC
GGCCACTGGTACCCGGAAACGGCGGTGGCGATGAAGCCGTTCGGCGACGGCTTCGTCAAACTGATCAAGATG
GCCATCGCGCCGATCATCTTCTGCACCGTGGTCACCGGCATCGCCGGCATGCAGAGCATGAAGTCGGTCGGC
AAGACCGGCGGCATGGCGCTGCTGTACTTCGAGGTCGTCTCCACCGTGGCCCTGATCATCGGCCTGGTAGTG
GTCAACGTGGTCCAGCCGGGCGCCGGCATGCACGTAGACCCGAACACCCTCGACACCAGCAAGATCGCTGCC
TACGCCGCTGCCGGCGAGAAGCAGAGCACTGTCGACTTCCTGATGAACGTGATCCCCGGCACCGTGGTCGGC
GCGTTCGCCAACGGCGACATCCTCCAGGTCCTGTTCTTCTCCGTGCTCTTCGGCTACGCCCTGCATCGCCTG
GGCAGCTACGGCAAGCCGGTGTTCGAGTTCATCGAGCGCGTCTCCCACGTGATGTTCAACATCATCAACGTG
ATCATGAAGGTCGCCCCGATCGGCGCGTTCGGCGCCATGGCCTTCACCATCGGCGCCTACGGTGTGGGTTCG
CTGGTGCAGCTCGGCCAGCTGATGCTGTGCTTCTACATCACCTGCATCCTGTTCGTGCTCATCGTCCTCGGC
GGCATCGCCCGCGCCCACGGCTTCAGCATCCTGCGCTTCATCAGGTACATCCGCGAGGAACTGCTGATCGTG
CTGGGCACCTCGTCTTCCGAGTCGGCTCTGCCGCGGATGATCGACAAGATGGAGAAGCTCGGCTGCAACAAG
TCGGTGGTCGGCCTGGTGATTCCCACCGGTTACTCCTTCAACCTCGACGGCACCTCGATCTACCTGACCATG
GCCGCGGTGTTCATCGCCCAGGCCACCGATACGCCGATGGACATCACCCACCAGATCACCCTGCTGCTGGTG
CTGCTGATCGCTTCCAAGGGCGCCGCCGGCGTCACCGGCAGCGGCTTCATCGTGCTCGCCGCGACCCTTTCC
GCCGTCGGCCACCTGCCGGTCGCCGGCTTGGCGCTGATCCTCGGCATCGACCGCTTCATGTCCGAAGCCCGC
GCGCTGACCAACCTGGTCGGCAACGGCGTGGCCACGGTAGTGGTTTCCAAGTGGTGCAAGCAGCTCGACGAG
GGCACCTTGCAGCGCGAACTGGCCGGCGAGGGCAACGCTTCGTCGCCTGCCAGCGATATTCCGGTGGGCGGC
CGCGAAGCGGTCTAA
Translation:
MTKQPFYKSLYVQVLVAIAIGIALGHWYPETAVAMKPFGDGFVKLIKMAIAPIIFCTVVTGIAGMQSMKSVG
KTGGMALLYFEVVSTVALIIGLVVVNVVQPGAGMHVDPNTLDTSKIAAYAAAGEKQSTVDFLMNVIPGTVVG
AFANGDILQVLFFSVLFGYALHRLGSYGKPVFEFIERVSHVMFNIINVIMKVAPIGAFGAMAFTIGAYGVGS
LVQLGQLMLCFYITCILFVLIVLGGIARAHGFSILRFIRYIREELLIVLGTSSSESALPRMIDKMEKLGCNK
SVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATDTPMDITHQITLLLVLLIASKGAAGVTGSGFIVLAATLS
AVGHLPVAGLALILGIDRFMSEARALTNLVGNGVATVVVSKWCKQLDEGTLQRELAGEGNASSPASDIPVGG
REAV*
AnnotationID:1297GeneID:1288
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 15:03:16
Gene Name:dctA
Confidence Code:2
GeneProduct:C4-dicarboxylate transport protein
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1301, more
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:2579
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16975
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1183_CDS.cgi
URL:
ReferenceID:19721
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1288

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2346 PA1183_tr translation of PA1183 436 99.99 99.99 0 2174.0
75401 gb|AAG04572.1|AE004548_6 (AE004548) C4-dicarboxylate transport protein [Pseudomonas aeruginosa PAO1] 436 99.99 99.99 0 2174.0
75404 gb|AAP29969.1| (AY214161) C4-dicarboxylate transport protein [Pseudomonas putida] 440 80.68 87.72 6 1757.0
75403 gb|AAN66812.1|AE016310_4 (AE016778) C4-dicarboxylate transport protein [Pseudomonas putida KT2440] 440 80.68 88.18 4 1776.0
75402 gb|AAO60164.1| (AY210439) dicarboxylic acid transporter [Pseudomonas chlororaphis] 444 79.05 87.83 8 1777.0
GC ORFID: 44290How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1183Glimmer Score:
Start: 589408Stop: 590718
Length: 1311
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1183 translation of PA1183Homolog Bit Score 842.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6446 (ORF: BLASTX 677.0), t_PA0119 (ORF: BLASTX 412.0), t_PA5479 (ORF: BLASTX 334.0), psyr_15may02_Scaffold2_revised_gene3107 (ORF: BLASTX 326.0), t_PA1183 (ORF: GLIMMER)
GC ORF Sequence
ATGACCAAACAACCCTTCTACAAGAGCCTGTACGTGCAGGTTCTGGTCGCCATCGCCATCGGTATCGCGCTC
GGCCACTGGTACCCGGAAACGGCGGTGGCGATGAAGCCGTTCGGCGACGGCTTCGTCAAACTGATCAAGATG
GCCATCGCGCCGATCATCTTCTGCACCGTGGTCACCGGCATCGCCGGCATGCAGAGCATGAAGTCGGTCGGC
AAGACCGGCGGCATGGCGCTGCTGTACTTCGAGGTCGTCTCCACCGTGGCCCTGATCATCGGCCTGGTAGTG
GTCAACGTGGTCCAGCCGGGCGCCGGCATGCACGTAGACCCGAACACCCTCGACACCAGCAAGATCGCTGCC
TACGCCGCTGCCGGCGAGAAGCAGAGCACTGTCGACTTCCTGATGAACGTGATCCCCGGCACCGTGGTCGGC
GCGTTCGCCAACGGCGACATCCTCCAGGTCCTGTTCTTCTCCGTGCTCTTCGGCTACGCCCTGCATCGCCTG
GGCAGCTACGGCAAGCCGGTGTTCGAGTTCATCGAGCGCGTCTCCCACGTGATGTTCAACATCATCAACGTG
ATCATGAAGGTCGCCCCGATCGGCGCGTTCGGCGCCATGGCCTTCACCATCGGCGCCTACGGTGTGGGTTCG
CTGGTGCAGCTCGGCCAGCTGATGCTGTGCTTCTACATCACCTGCATCCTGTTCGTGCTCATCGTCCTCGGC
GGCATCGCCCGCGCCCACGGCTTCAGCATCCTGCGCTTCATCAGGTACATCCGCGAGGAACTGCTGATCGTG
CTGGGCACCTCGTCTTCCGAGTCGGCTCTGCCGCGGATGATCGACAAGATGGAGAAGCTCGGCTGCAACAAG
TCGGTGGTCGGCCTGGTGATTCCCACCGGTTACTCCTTCAACCTCGACGGCACCTCGATCTACCTGACCATG
GCCGCGGTGTTCATCGCCCAGGCCACCGATACGCCGATGGACATCACCCACCAGATCACCCTGCTGCTGGTG
CTGCTGATCGCTTCCAAGGGCGCCGCCGGCGTCACCGGCAGCGGCTTCATCGTGCTCGCCGCGACCCTTTCC
GCCGTCGGCCACCTGCCGGTCGCCGGCTTGGCGCTGATCCTCGGCATCGACCGCTTCATGTCCGAAGCCCGC
GCGCTGACCAACCTGGTCGGCAACGGCGTGGCCACGGTAGTGGTTTCCAAGTGGTGCAAGCAGCTCGACGAG
GGCACCTTGCAGCGCGAACTGGCCGGCGAGGGCAACGCTTCGTCGCCTGCCAGCGATATTCCGGTGGGCGGC
CGCGAAGCGGTCTAA