ViewGene
Locus Name:
GeneID:
Location:

GeneID:1287
TrivialName: PA14_52130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52130
PAO1 Ortholog Locus:PA0938
Sequence Length:1329
Protein Length:442
Start: 4623385
Stop: 4622057
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04327.1|AE004528_5 (AE004528) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 438/442 (99%), Positives = 440/442 (99%)
Sequence:
ATGCCTTCCTCACAGCTTCCGGGGGCTTCGCCCTCGGAGATCGATATCGTTCAGCTGTTCCAGCAATTGTGG
GCGTCGAAGTGGCTGATAGCGCTGATCGCGGCCTTGGCGACCGCCGCTGCGCTCGCCTACGCGCTGTTGGCC
GTTCCGACCTACCAGGTGGATGTCCTGTTGCGGCCGATCCAGACCAAGGCCCTGGAGGCTGTCAATGTCAAG
GGGCTGTATGCCCTGACTCCGCGGGAAGCGCTGGATCGCGTCGGCAACGAGCTGGCAGCCTACTCCGGCAGG
CTGGAGTATTTCGAAGCCCATCCAGAGCTATTCCAGCAATTGAACGCCGAGGGCCTGTCCCCCGAGCAGGCT
TTCTGGAAGTTCAACCAGGATGCCTTCAGCATGCAGCAGGCGGACTTGAAGAAGGACCCCCAGGCGGCGCCT
TTCTTCCGCTTGTCCATGCAGTATCCCCAGGGCATGGATGGTGCCGCCATTCTCAACGGCATGCTCGCGTCG
ACCATCGAGAACGAGCGCCAGCGAATCCTGGACGACCTCCAGGCACGTATCGACGGTCGCCTGCAATTCCTC
GAGCAGGATATCGAAGGCAAGCGTGCCAGTTACCAGGCTACCAAGGAGGGCAAGATCGCCCGGTTGCTGGAA
GCGGACAGCATCCGGCGGGCTGGCTTGGAGGATGAGCTCAAGGCGTTGCGCGGGCGGCTGAAGATGGTGCGC
GACTCGCGTATCCAGCAGCTCAACGAGGCTATCCAGATCGCCACCCGGCTGGGGATCGTCAAGCCGACGACC
CCGGGCGCACTGGGAGAGGTCGGGCAGGATGGCTCGCGCAGCGTTTTCCGCACCGAGGTGAATAACCAGCAG
ATTCCCCTGTATTTCATGGGTGTCGATGCCTTGACCGCCGAGCGCGATACCTTGCTCAAGCGCAAGGGCGAT
GACTTCACCGAGCCCCGCGTGGCGAAGATCCAGCAGGAGCTGAGGCAGCTGGAGAACAACCGTGAAGTGCAA
TACCTGCAGGCTCGAAAGGGCGAGGAGCGTTTCTTCGAAAACATCGACAAGCTGCGTGGAGAGCAGGCGCGC
CTCAAGACTCTGAAGGCGAGCGAGCTGAAGATCGAACTGGTGCGGATCGACCAGAAGGCTTCGACCCCTCTG
AAACCCATCAAGCCGCGCAAGGCCTTGGTGGTGGCCTTGGGCCTCCTGGGCGGGTTGGTGTTCGGCGTGCTG
GTGGCTCTGGTTCGGGCAATGTTGCGTGCCCCTCGGCAACGGGTACAGGAAGATAGCCTGCCGCCGGGAGTC
GTCAGTCTCGACCGGAGCCTTTCGGGGACCTGA
Translation:
MPSSQLPGASPSEIDIVQLFQQLWASKWLIALIAALATAAALAYALLAVPTYQVDVLLRPIQTKALEAVNVK
GLYALTPREALDRVGNELAAYSGRLEYFEAHPELFQQLNAEGLSPEQAFWKFNQDAFSMQQADLKKDPQAAP
FFRLSMQYPQGMDGAAILNGMLASTIENERQRILDDLQARIDGRLQFLEQDIEGKRASYQATKEGKIARLLE
ADSIRRAGLEDELKALRGRLKMVRDSRIQQLNEAIQIATRLGIVKPTTPGALGEVGQDGSRSVFRTEVNNQQ
IPLYFMGVDALTAERDTLLKRKGDDFTEPRVAKIQQELRQLENNREVQYLQARKGEERFFENIDKLRGEQAR
LKTLKASELKIELVRIDQKASTPLKPIKPRKALVVALGLLGGLVFGVLVALVRAMLRAPRQRVQEDSLPPGV
VSLDRSLSGT*
AnnotationID:1296GeneID:1287
AnnotatorUID: danlee
Modification Date/Time: 2004-05-10 15:03:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0938
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3765
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3765, WzzB, Chain length determinant protein [Cell envelope biogenesis, outer membrane]. 
         CD-Length = 347 residues,  98.6% aligned
         Score =  234 bits (597), Expect = 2e-62






   
Genomic Context:






   
Comment:


















    ReferenceID:2577




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19719




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1287
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2345
                           PA0938_tr
                           translation of PA0938
                           442
                           99.09
                           99.54
                           0
                           2176.0
     

     
     
75400
                           gb|AAG04327.1|AE004528_5
                           (AE004528) hypothetical protein PA0938 [Pseudomonas aeruginosa PAO1]
                           442
                           99.09
                           99.54
                           0
                           2176.0
     

     






      

          
GC ORFID: 44289How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0938Glimmer Score: 

          
Start: 330522Stop: 331850

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0938 translation of PA0938Homolog Bit Score 842.0

          
Other Homologs:  t_PA0938 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTCCTCACAGCTTCCGGGGGCTTCGCCCTCGGAGATCGATATCGTTCAGCTGTTCCAGCAATTGTGG 
GCGTCGAAGTGGCTGATAGCGCTGATCGCGGCCTTGGCGACCGCCGCTGCGCTCGCCTACGCGCTGTTGGCC 
GTTCCGACCTACCAGGTGGATGTCCTGTTGCGGCCGATCCAGACCAAGGCCCTGGAGGCTGTCAATGTCAAG 
GGGCTGTATGCCCTGACTCCGCGGGAAGCGCTGGATCGCGTCGGCAACGAGCTGGCAGCCTACTCCGGCAGG 
CTGGAGTATTTCGAAGCCCATCCAGAGCTATTCCAGCAATTGAACGCCGAGGGCCTGTCCCCCGAGCAGGCT 
TTCTGGAAGTTCAACCAGGATGCCTTCAGCATGCAGCAGGCGGACTTGAAGAAGGACCCCCAGGCGGCGCCT 
TTCTTCCGCTTGTCCATGCAGTATCCCCAGGGCATGGATGGTGCCGCCATTCTCAACGGCATGCTCGCGTCG 
ACCATCGAGAACGAGCGCCAGCGAATCCTGGACGACCTCCAGGCACGTATCGACGGTCGCCTGCAATTCCTC 
GAGCAGGATATCGAAGGCAAGCGTGCCAGTTACCAGGCTACCAAGGAGGGCAAGATCGCCCGGTTGCTGGAA 
GCGGACAGCATCCGGCGGGCTGGCTTGGAGGATGAGCTCAAGGCGTTGCGCGGGCGGCTGAAGATGGTGCGC 
GACTCGCGTATCCAGCAGCTCAACGAGGCTATCCAGATCGCCACCCGGCTGGGGATCGTCAAGCCGACGACC 
CCGGGCGCACTGGGAGAGGTCGGGCAGGATGGCTCGCGCAGCGTTTTCCGCACCGAGGTGAATAACCAGCAG 
ATTCCCCTGTATTTCATGGGTGTCGATGCCTTGACCGCCGAGCGCGATACCTTGCTCAAGCGCAAGGGCGAT 
GACTTCACCGAGCCCCGCGTGGCGAAGATCCAGCAGGAGCTGAGGCAGCTGGAGAACAACCGTGAAGTGCAA 
TACCTGCAGGCTCGAAAGGGCGAGGAGCGTTTCTTCGAAAACATCGACAAGCTGCGTGGAGAGCAGGCGCGC 
CTCAAGACTCTGAAGGCGAGCGAGCTGAAGATCGAACTGGTGCGGATCGACCAGAAGGCTTCGACCCCTCTG 
AAACCCATCAAGCCGCGCAAGGCCTTGGTGGTGGCCTTGGGCCTCCTGGGCGGGTTGGTGTTCGGCGTGCTG 
GTGGCTCTGGTTCGGGCAATGTTGCGTGCCCCTCGGCAACGGGTACAGGAAGATAGCCTGCCGCCGGGAGTC 
GTCAGTCTCGACCGGAGCCTTTCGGGGACCTGA