ViewGene
Locus Name:
GeneID:
Location:

GeneID:1286
TrivialName: PA14_66050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66050
PAO1 Ortholog Locus:PA4995
Sequence Length:1290
Protein Length:429
Start: 5883537
Stop: 5882248
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08380.1|AE004912_6 (AE004912) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 427/429 (99%), Positives = 429/429 (100%)
Sequence:
ATGCCCATGAGCACCGATGTACAGGGCCGTGCCCTGGCTGTACTGAACCGTGTCGCCCAGGCCGACTGGCCG
GATCGCTTCAATCTTCGCAAACCCTTCGAGAAACTGCTCTACAGCGGCAGCCGTACCGGCTTCCGCCTGGCC
AGCGAGCGTTCGGCGAAGCAGGCGAAGGGACCGCGCAAGGCCGATCCGGACGGGTTGTTCGACCTGTCGTTC
TCCGACGACCAGCAGATGCTGGTGGACATGCTCGAAGGCTTCGCCCTGGAGGTGTTGCGTCCGCTGGCTCAT
GACGCGGATGCCGAGGCCAGCCTGCCGGCGGAACTGCTCAACCAGGCGCTGGAGCTGGGCCTGACCCACTAT
GGGGTCGGCGAGGTGCACGGCGGCATGGCCGGTGAGCGCACCACGGTGACCACTGCCCTTATCGCCGAGGCC
CTGGCCAAGGGCGATCTGTCGCTGGCGGCGGCCCTGCTGGTGCCGTTGTCGGCGGCCAACTGCATCCGCCGC
TGGGGCAGCCCCTCGCAGCAGGCGCAGTGGCTGCCGGCGTTCGTCAGCGAAGAGGGGGCGCCGCTCACCGCC
ATCGCGGTCAACGAGCCGAGTCTGCTGTTCGACCCGCAGAAACTGGCGACCCGCGCCCGGCGCAAGGGCAGT
CACTACCTGCTTTCCGGAGAGAAATGCCTGGTCCTGCGCGGCCTGGAGGCCAGCCGCCTGATCGTCGCGGCG
AAGACCGACGAGGGGCCTGCGCTGTTCCTGGTGGAAGCCTCCGCCAAGGGCGTCGAGCGACGTGCCGAGCCG
GCGATGGGACTGAAGGCCGGCGGCACCGCCCGGTTGCGCCTGAAGAGCGTCAAGGTGCCGGCGGACAACCGC
CTGGCCGCCGAGCATTTCGACTACCGGGCCTTCCTCGATCACGCGGCCCTGGCCTGGTGTGCCCTGGCGCTG
GGCACCGGGCAGGCGGCGCTGGACTACGTGATCGCCTACTGCAACGAGCGCGAGGCCTTCGGCGAGCCGATC
AGCCATCGCCAGGGGGTCGCCTTCATGGTCGCCGACATCGCCATCGAACTGGACGCCATGCGCCTGATGGTC
TGGCGCGCCTGCGCCCTGGCCGAGCGCGGCCAGCCGTTCCAGCGCGAGGCTTACCTGGCGCGTCTGCTGTGC
GCCGAGAAGGCGATGAAGATCGGCACCGACGCCGTGCAACTGCTCGGCGGCCACGGCTTCACCAAGGAGCAT
CCGGCCGAGCGCTGGTACCGCGACCTGCGCGCGGTAGCGCTGATGGCCGGCGGCCTGCACCTGTGA
Translation:
MPMSTDVQGRALAVLNRVAQADWPDRFNLRKPFEKLLYSGSRTGFRLASERSAKQAKGPRKADPDGLFDLSF
SDDQQMLVDMLEGFALEVLRPLAHDADAEASLPAELLNQALELGLTHYGVGEVHGGMAGERTTVTTALIAEA
LAKGDLSLAAALLVPLSAANCIRRWGSPSQQAQWLPAFVSEEGAPLTAIAVNEPSLLFDPQKLATRARRKGS
HYLLSGEKCLVLRGLEASRLIVAAKTDEGPALFLVEASAKGVERRAEPAMGLKAGGTARLRLKSVKVPADNR
LAAEHFDYRAFLDHAALAWCALALGTGQAALDYVIAYCNEREAFGEPISHRQGVAFMVADIAIELDAMRLMV
WRACALAERGQPFQREAYLARLLCAEKAMKIGTDAVQLLGGHGFTKEHPAERWYRDLRAVALMAGGLHL*
AnnotationID:1295GeneID:1286
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:49
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA4995
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01158,cd00567,COG1960,cd01162
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK47566.1| (AE007137) acyl-CoA dehydrogenase [Mycobacterium tuberculosis
           CDC1551]
          Length = 468

 Score =  352 bits (902), Expect = 3e-96
 Identities = 193/426 (45%), Positives = 264/426 (61%), Gaps = 12/426 (2%)

>emb|CAD95255.1| (BX248345) PROBABLE ACYL-CoA DEHYDROGENASE FADE24 [Mycobacterium
           bovis subsp. bovis AF2122/97]
          Length = 468

 Score =  352 bits (902), Expect = 3e-96
 Identities = 193/426 (45%), Positives = 264/426 (61%), Gaps = 12/426 (2%)








 
Structural Features:
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD). 
CD-Length = 373 residues,  96.0% aligned
Score =  256 bits (655), Expect = 5e-69

COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
CD-Length = 393 residues,  94.9% aligned
Score =  209 bits (533), Expect = 4e-55

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  97.3% aligned
Score =  218 bits (556), Expect = 1e-57

cd01162, IBD, Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, 
beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism.
CD-Length = 375 residues,  95.5% aligned
Score =  188 bits (478), Expect = 1e-48






   
Genomic Context:






   
Comment:


















    ReferenceID:2575




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19717




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35091




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1286_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1286
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2344
                           PA4995_tr
                           translation of PA4995
                           429
                           99.53
                           99.99
                           0
                           2178.0
     

     
     
75394
                           gb|AAG08380.1|AE004912_6
                           (AE004912) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           429
                           99.53
                           99.99
                           0
                           2178.0
     

     
     
75395
                           emb|CAB06276.1|
                           (BX842582) PROBABLE ACYL-CoA DEHYDROGENASE FADE24 [Mycobacterium tuberculosis H37Rv]
                           469
                           42.00
                           57.78
                           41
                           908.0
     

     
     
75396
                           gb|AAK47566.1|
                           (AE007137) acyl-CoA dehydrogenase [Mycobacterium tuberculosis CDC1551]
                           469
                           42.00
                           57.78
                           41
                           908.0
     

     
     
75397
                           emb|CAD95255.1|
                           (BX248345) PROBABLE ACYL-CoA DEHYDROGENASE FADE24 [Mycobacterium bovis subsp. bovis AF2122/97]
                           469
                           42.00
                           57.78
                           41
                           908.0
     

     






      

          
GC ORFID: 44288How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4995Glimmer Score: 

          
Start: 5147220Stop: 5145931

          
Length: 1290


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4995 translation of PA4995Homolog Bit Score 843.0

          
Other Homologs:  t_PA4995 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCATGAGCACCGATGTACAGGGCCGTGCCCTGGCTGTACTGAACCGTGTCGCCCAGGCCGACTGGCCG 
GATCGCTTCAATCTTCGCAAACCCTTCGAGAAACTGCTCTACAGCGGCAGCCGTACCGGCTTCCGCCTGGCC 
AGCGAGCGTTCGGCGAAGCAGGCGAAGGGACCGCGCAAGGCCGATCCGGACGGGTTGTTCGACCTGTCGTTC 
TCCGACGACCAGCAGATGCTGGTGGACATGCTCGAAGGCTTCGCCCTGGAGGTGTTGCGTCCGCTGGCTCAT 
GACGCGGATGCCGAGGCCAGCCTGCCGGCGGAACTGCTCAACCAGGCGCTGGAGCTGGGCCTGACCCACTAT 
GGGGTCGGCGAGGTGCACGGCGGCATGGCCGGTGAGCGCACCACGGTGACCACTGCCCTTATCGCCGAGGCC 
CTGGCCAAGGGCGATCTGTCGCTGGCGGCGGCCCTGCTGGTGCCGTTGTCGGCGGCCAACTGCATCCGCCGC 
TGGGGCAGCCCCTCGCAGCAGGCGCAGTGGCTGCCGGCGTTCGTCAGCGAAGAGGGGGCGCCGCTCACCGCC 
ATCGCGGTCAACGAGCCGAGTCTGCTGTTCGACCCGCAGAAACTGGCGACCCGCGCCCGGCGCAAGGGCAGT 
CACTACCTGCTTTCCGGAGAGAAATGCCTGGTCCTGCGCGGCCTGGAGGCCAGCCGCCTGATCGTCGCGGCG 
AAGACCGACGAGGGGCCTGCGCTGTTCCTGGTGGAAGCCTCCGCCAAGGGCGTCGAGCGACGTGCCGAGCCG 
GCGATGGGACTGAAGGCCGGCGGCACCGCCCGGTTGCGCCTGAAGAGCGTCAAGGTGCCGGCGGACAACCGC 
CTGGCCGCCGAGCATTTCGACTACCGGGCCTTCCTCGATCACGCGGCCCTGGCCTGGTGTGCCCTGGCGCTG 
GGCACCGGGCAGGCGGCGCTGGACTACGTGATCGCCTACTGCAACGAGCGCGAGGCCTTCGGCGAGCCGATC 
AGCCATCGCCAGGGGGTCGCCTTCATGGTCGCCGACATCGCCATCGAACTGGACGCCATGCGCCTGATGGTC 
TGGCGCGCCTGCGCCCTGGCCGAGCGCGGCCAGCCGTTCCAGCGCGAGGCTTACCTGGCGCGTCTGCTGTGC 
GCCGAGAAGGCGATGAAGATCGGCACCGACGCCGTGCAACTGCTCGGCGGCCACGGCTTCACCAAGGAGCAT 
CCGGCCGAGCGCTGGTACCGCGACCTGCGCGCGGTAGCGCTGATGGCCGGCGGCCTGCACCTGTGA