ViewGene
Locus Name:
GeneID:
Location:

GeneID:1283
TrivialName: PA14_39780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39780
PAO1 Ortholog Locus:PA1914
Sequence Length:1227
Protein Length:408
Start: 3544298
Stop: 3545524
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05302.1|AE004617_6 (AE004617) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 408/408 (100%), Positives = 408/408 (100%)
Sequence:
ATGAACGGAAGCAGATCCACCTTTCTCTACCTTCTCGCCGCCGCCGGCCTGGCGCTGACACCCGCGGCCCAG
GCCGACCGGGGCAACGACGTGGTCGCCCGGCTCAACCAGTTGTACAACGACACCCGCCAGGATTGCGGCGGA
CCGTCGAAGCCGGCATTCCTCTGTTCCGGCGTGCTGTTCCGCGCCACCTGGCCTTCGACCGACTACATGTTC
TACAGCATCAGTCCGAAGAGCCAGAAAAGCGGCGGCGTCTCCGCCTCCTACCTGCGCAAGGACGCCAAGTAC
CGCAAGCTCGCCTATGGCCTGAAGAGTGGCTTCATCTTCGACACCATCTTCGGTAATCCGAAGGACCACCAG
GACTATGCGGTGCTCTGTTCCTTCCCCATCGACGCCGCCACCGACGACCGCGCCCAGCAGGGTTGCACCGAT
TCGCGGCGCACGCCGAACAGCGTCGAGAAGTCCTGCCAGGACATCAACGTCAGCACCGCCGAGCAGTGGGCG
GCGAACTACCGGCAGAACCGCGGTGACCATTCGCGGCAGTGCTCCTTCGACGTCCGCGACGAGCGCAATACC
GCCGCCGGCCCGGCCTTCTACCAGAGCATCCGGGCGATGGCGCAGATCGCCGACGAATCCTTCACCACCCAG
AACGAACTGCGCCTGGCCAAGTGGGAGGAAAACCCGCCGAAGTCGCCGTCGATCCTCGCCGCGTTCTACACC
GAGGACGCCGGCCTGGAGGGCGCTCGGCTCAACCAGATCCAGTGGTATCAGTCGGTCCAGGCATTCCTCCCG
ATCATCAACATGCGACTGCCGCAGACCCGCCAGCAGGACGCGCAGTTCGCCTACGACGGGCGTAAGCAGGCG
ATCTACCCGACCAGCGAGAAGAATGCCTGCGAGCGCTATGTGGAAAGCGCCACCTGGGTGGAGCGCGACGAT
CCGGGCTTCAGGAAGAAGATCATGACCCTGGAAGTGGTACCGACCGATTGCGGGCGCAAGATCCAGGACAAC
CAGACCAACAATTTCTTCAACGAGCTGGTGGTCGACCACTACCTGGACAGCGAATGGAAGGACAACCCGGAC
AACCGCGACAGCAATATCGGCAGCATGCGCCGACAACTGGTCTGCCACTTCAACGTCGCCCGCAACAAGCCC
GAGTGGAACCTGGAACCCTCGCGGCCGTACACCTCCAACGAGGACTCCATCGCCAAGGGCTGCAATAACACC
TGA
Translation:
MNGSRSTFLYLLAAAGLALTPAAQADRGNDVVARLNQLYNDTRQDCGGPSKPAFLCSGVLFRATWPSTDYMF
YSISPKSQKSGGVSASYLRKDAKYRKLAYGLKSGFIFDTIFGNPKDHQDYAVLCSFPIDAATDDRAQQGCTD
SRRTPNSVEKSCQDINVSTAEQWAANYRQNRGDHSRQCSFDVRDERNTAAGPAFYQSIRAMAQIADESFTTQ
NELRLAKWEENPPKSPSILAAFYTEDAGLEGARLNQIQWYQSVQAFLPIINMRLPQTRQQDAQFAYDGRKQA
IYPTSEKNACERYVESATWVERDDPGFRKKIMTLEVVPTDCGRKIQDNQTNNFFNELVVDHYLDSEWKDNPD
NRDSNIGSMRRQLVCHFNVARNKPEWNLEPSRPYTSNEDSIAKGCNNT*
AnnotationID:1292GeneID:1283
AnnotatorUID: diggins
Modification Date/Time: 2005-06-05 10:10:48
Gene Name:
Confidence Code:3
GeneProduct:putative halovibrin
Cell Localization:()
Synonyms:hvn
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAA96022.1| (U38815) halovibrin [Vibrio fischeri]
          Length = 300

 Score =  203 bits (517), Expect = 1e-51
 Identities = 119/268 (44%), Positives = 159/268 (59%), Gaps = 13/268 (4%)







 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:
other possible gene name: hvnA


















    ReferenceID:2569




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1283
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2341
                           PA1914_tr
                           translation of PA1914
                           408
                           99.99
                           99.99
                           0
                           2179.0
     

     
     
75239
                           gb|AAG05302.1|AE004617_6
                           (AE004617) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           408
                           99.99
                           99.99
                           0
                           2179.0
     

     
     
75241
                           gb|AAG42286.1|AF206719_1
                           (AF206719) HvnA [Vibrio fischeri]
                           427
                           29.74
                           40.28
                           146
                           527.0
     

     
     
75242
                           gb|AAA96022.1|
                           (U38815) halovibrin [Vibrio fischeri]
                           427
                           29.74
                           40.28
                           146
                           527.0
     

     
     
75240
                           emb|CAE13942.1|
                           (BX571864) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           443
                           25.73
                           36.11
                           183
                           511.0
     

     






      

          
GC ORFID: 44285How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1914Glimmer Score: 

          
Start: 1409613Stop: 1408387

          
Length: 1227


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1914 translation of PA1914Homolog Bit Score 843.0

          
Other Homologs:  t_PA1914 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGAAGCAGATCCACCTTTCTCTACCTTCTCGCCGCCGCCGGCCTGGCGCTGACACCCGCGGCCCAG 
GCCGACCGGGGCAACGACGTGGTCGCCCGGCTCAACCAGTTGTACAACGACACCCGCCAGGATTGCGGCGGA 
CCGTCGAAGCCGGCATTCCTCTGTTCCGGCGTGCTGTTCCGCGCCACCTGGCCTTCGACCGACTACATGTTC 
TACAGCATCAGTCCGAAGAGCCAGAAAAGCGGCGGCGTCTCCGCCTCCTACCTGCGCAAGGACGCCAAGTAC 
CGCAAGCTCGCCTATGGCCTGAAGAGTGGCTTCATCTTCGACACCATCTTCGGTAATCCGAAGGACCACCAG 
GACTATGCGGTGCTCTGTTCCTTCCCCATCGACGCCGCCACCGACGACCGCGCCCAGCAGGGTTGCACCGAT 
TCGCGGCGCACGCCGAACAGCGTCGAGAAGTCCTGCCAGGACATCAACGTCAGCACCGCCGAGCAGTGGGCG 
GCGAACTACCGGCAGAACCGCGGTGACCATTCGCGGCAGTGCTCCTTCGACGTCCGCGACGAGCGCAATACC 
GCCGCCGGCCCGGCCTTCTACCAGAGCATCCGGGCGATGGCGCAGATCGCCGACGAATCCTTCACCACCCAG 
AACGAACTGCGCCTGGCCAAGTGGGAGGAAAACCCGCCGAAGTCGCCGTCGATCCTCGCCGCGTTCTACACC 
GAGGACGCCGGCCTGGAGGGCGCTCGGCTCAACCAGATCCAGTGGTATCAGTCGGTCCAGGCATTCCTCCCG 
ATCATCAACATGCGACTGCCGCAGACCCGCCAGCAGGACGCGCAGTTCGCCTACGACGGGCGTAAGCAGGCG 
ATCTACCCGACCAGCGAGAAGAATGCCTGCGAGCGCTATGTGGAAAGCGCCACCTGGGTGGAGCGCGACGAT 
CCGGGCTTCAGGAAGAAGATCATGACCCTGGAAGTGGTACCGACCGATTGCGGGCGCAAGATCCAGGACAAC 
CAGACCAACAATTTCTTCAACGAGCTGGTGGTCGACCACTACCTGGACAGCGAATGGAAGGACAACCCGGAC 
AACCGCGACAGCAATATCGGCAGCATGCGCCGACAACTGGTCTGCCACTTCAACGTCGCCCGCAACAAGCCC 
GAGTGGAACCTGGAACCCTCGCGGCCGTACACCTCCAACGAGGACTCCATCGCCAAGGGCTGCAATAACACC 
TGA