ViewGene
Locus Name:
GeneID:
Location:

GeneID:128
TrivialName: PA14_37490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37490
PAO1 Ortholog Locus:PA2089
Sequence Length:2652
Protein Length:883
Start: 3338374
Stop: 3335723
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05477.1|AE004636_8 (AE004636) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 877/883 (99%), Positives = 879/883 (99%)
Sequence:
ATGCCCAACCCGCGTTCGCCACGTCTTCGACTCGTCCCCGTGCTCTGCGCGGTCGGCCTGGCCTGCCTTGGC
CAGCCCGGCGAGTCGGCGGCAGAGGAGGTCCGCGCCACCAGCCGCGCCGAGATCCAGCGCTTCGACATCCCG
GCCGGCGAACTGGCCCAGGTACTGCTGAGCATCGTCCGCCAGAGTCGCACCCCGATCGCCTTCGACCAGCAC
CTGGTGGAGGGCCTGCCGGCACCGGCGATCCAGGGCTCCTACAGCGTCGAGCAGGCGCTGCAGCGGGCCTTG
CGGGGCAGCGGCCTGGAATACAGCCGCAGCGCCGCCGGCGTGCTCAGCCTGCAACGCGCCACGGCGCCGGAT
GCCGCGCTGCCGGCGGCGAAGCCCGCCGGGACCCTGGCCACGGTGGTGGTCACCGGCACCCGCAAGGCCGAT
GTCAAGGCCGGCGAGAGCCTGGCACCGATCGATGTGGTCAGCGCCGAGCAATTGCGCGACAGTGGCAGCGGC
GACCTGCGCGACGCCCTGGTGCGCCTGCTGCCCTCGCTGTCGCGCCAGGCCCAGGCCTACAACGCTTCGGCG
CTGACCAACGCGCAGTCGCTGCGCGGCCTGAGTCCCAACCACGTGCTGGTGCTGGTGAACGGCAAGCGCCGC
CACGAGACCGCCAACATCAATGTCAGCGGCGGGCTGCAGAGCGGCTCCACCGGGGTCGACCTGGACACCATC
CCGCTCGCCGCCATCGAGCGCATCGAGGTGCTGCGCGACGGCGCCTCGGCGCAGTACGGCTCGGACGCCATC
GCCGGGGTGATCAACGTCATCCTCAAGTCGGCCGACCACGGCGGCCGGCTCGCCTACGACAACGGTCGCTAC
GGCGATGGCGACGGCCTGACCCAGAACGGCGGGGTGAATGGCGGCCTGCGTTTCGGCGAGAGCGGTTTCCTC
AACCTCAGCGCGCAGTTCCGCGAACAGGCGCGGACCATCCGCGCCGGCATCGACCAGCGTACCGGGCACTAC
GGCAACCCGTCCATCGGCGACCCTTCGCTGCACCGCCAGGCGCTGGCCTACAACGCCGGCGTGGCGCTGGAC
GACAACGTCGAGCTGTACAGCTTCGCCACCTATACCCATCGCTCGGTGTCCTCGGCGCAGATCTACCAGTTG
CCGTCCCTGGCGCCGCGACTCTATCCGAACGGCTTCACCCCGCGCATCACCAGCGACGAGGACGACTATTCG
CTGACCCTCGGCGCCCGTGGCGGCGAGCTGTTCGGCGCCTGGGACTGGGACCTCAGTTCCACCTACGGTGCC
GACCGCCCGGAGATCGGCATGGACCATTCGATCAACCTCGCCCTCTACGGCGAGACCGGCGATTCGCCGCGG
TCCTTCGACCTGGCGCGCTACAAGGCCACCCAGTGGACCAACAATCTCGACCTGCGCCGCGACTTCGACCTC
GCCTGGCTGCCCGCGCCGCTGAATTTCTCCTGGGGCCTGGAGCAGCGCCGCGAGCTCTACGAGGTCGAGGCC
GGCGATCCCTGGTCCTACTACAACGGCGGTTCCAAGGCGCTCCCCGGACAGGCGCCGGCCAGCGCCGGACAG
TGGAGCCGCGACGTGCTCGGCGCCTATCTCGACCTGTCCACCGCCCTCGACGAGCGCTGGCAACTGGAGACG
GCGGCGCGCTACGAGCACTACAGCGACTTCGGCAGCACCACCAACGGCAAGCTCGCCAGCCGCTACCGCTTC
AGCCCCGAGGTGTCGGCGCGGGCCAGTCTCAGCAGCGGCTTCCGCGCGCCGTCGCTGGCCCAGGAGAACTAC
ACCAGCCTGGGCGTCTCGCCGACCATCGCCAGCGGCCTGCTGGCGGTCAACTCGCCGGCGGCCAGGCTGCTC
GGCGCCGAAGACCTGGAGCCGGAAAAGTCGATCAGCTACAACCTCGGCCTGGTGCTCGATCCCTTGCCGGAC
CTGAACCTGGCCATCGACACCTATCGCATCGAGATCCGCGACCGCATCGTCGACGGTGCCACCTATTCCGGA
CAGCCGGCGATCGATGCGCTGCGCGCCGGCGGGATCAGCATCCCGGCCGGACTGACCCAGGTCAGCACCCAC
TACATGACCAACGGCGCCGACACCCGTACCCACGGCCTCGACCTCACCGCCAGCTACCTGACCCGGCTCGGC
GAGTGGGGCCGGATCGACTGGCGCCTGGGCGCCAACGTCAATCGCACGAAGCTGGTCAGGAATCATCGCGGG
CGCAACGGCCAGCCGCTGCTCAACGACCAGCAGCAGGCCTGGATCACCAGCTCCACGCCGCGCAGCCAGGTC
AGCCTGCAGGCCGACTGGAGCTACCGGCGCTGGGGGCTGACCCTGCGCGAAACGCGCTACAGCAAGACGGTT
TCCGAACTGGACTACTACACCGGCGAGCATGCCTATTCGACCACGGTCTTCAACCGCTTCGAGAACTCGCCC
AAGTACATCACCGACGTCGCCCTGCGCTATGCGGCGAGCCGCAACCTGACCCTGAGCGCCGGGGCCAACAAT
CTGTTCGACGTGAAGCCCGACAAGCTGCCGGCCGAGAGCGCCTACCTCGGCTTCAACCAGTACGACACCTAT
GCCTCGCAGATCAGCTTCAACGGCGCCTTCTACTACCTCGGCGCGGCCTACACCTTCTAA
Translation:
MPNPRSPRLRLVPVLCAVGLACLGQPGESAAEEVRATSRAEIQRFDIPAGELAQVLLSIVRQSRTPIAFDQH
LVEGLPAPAIQGSYSVEQALQRALRGSGLEYSRSAAGVLSLQRATAPDAALPAAKPAGTLATVVVTGTRKAD
VKAGESLAPIDVVSAEQLRDSGSGDLRDALVRLLPSLSRQAQAYNASALTNAQSLRGLSPNHVLVLVNGKRR
HETANINVSGGLQSGSTGVDLDTIPLAAIERIEVLRDGASAQYGSDAIAGVINVILKSADHGGRLAYDNGRY
GDGDGLTQNGGVNGGLRFGESGFLNLSAQFREQARTIRAGIDQRTGHYGNPSIGDPSLHRQALAYNAGVALD
DNVELYSFATYTHRSVSSAQIYQLPSLAPRLYPNGFTPRITSDEDDYSLTLGARGGELFGAWDWDLSSTYGA
DRPEIGMDHSINLALYGETGDSPRSFDLARYKATQWTNNLDLRRDFDLAWLPAPLNFSWGLEQRRELYEVEA
GDPWSYYNGGSKALPGQAPASAGQWSRDVLGAYLDLSTALDERWQLETAARYEHYSDFGSTTNGKLASRYRF
SPEVSARASLSSGFRAPSLAQENYTSLGVSPTIASGLLAVNSPAARLLGAEDLEPEKSISYNLGLVLDPLPD
LNLAIDTYRIEIRDRIVDGATYSGQPAIDALRAGGISIPAGLTQVSTHYMTNGADTRTHGLDLTASYLTRLG
EWGRIDWRLGANVNRTKLVRNHRGRNGQPLLNDQQQAWITSSTPRSQVSLQADWSYRRWGLTLRETRYSKTV
SELDYYTGEHAYSTTVFNRFENSPKYITDVALRYAASRNLTLSAGANNLFDVKPDKLPAESAYLGFNQYDTY
ASQISFNGAFYYLGAAYTF*
AnnotationID:138GeneID:128
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:PA2089
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative outer membrane receptor protein
Functional Category Confidence Code:5
COGs:pfam00593,COG4771,COG1629
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55991.1| (AE016864) TonB-dependent siderophore receptor, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 800

 Score =  497 bits (1279), Expect = e-139
 Identities = 315/780 (40%), Positives = 434/780 (55%), Gaps = 46/780 (5%)

>gb|AAM38010.1| (AE011961) ferric enterobactin receptor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 795

 Score =  454 bits (1167), Expect = e-126
 Identities = 301/791 (38%), Positives = 430/791 (54%), Gaps = 64/791 (8%)








 
Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.9% aligned
Score =  180 bits (456), Expect = 8e-46
Identities = 155/801 (19%), Positives = 229/801 (28%), Gaps = 156/801 (19%)

COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins 
[Inorganic ion transport and metabolism]
CD-Length = 699 residues,  97.3% aligned
Score =  165 bits (420), Expect = 2e-41
Identities = 177/776 (22%), Positives = 295/776 (38%), Gaps = 106/776 (13%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  98.8% aligned
Score =  158 bits (398), Expect = 4e-39
Identities = 164/830 (19%), Positives = 253/830 (30%), Gaps = 107/830 (12%)







   
Genomic Context:






   
Comment:


















    ReferenceID:259




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17401




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32618




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:128_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:128
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
237
                           PA2089_tr
                           translation of PA2089
                           883
                           99.32
                           99.54
                           0
                           4512.0
     

     
     
17031
                           gb|AAG05477.1|AE004636_8
                           (AE004636) hypothetical protein PA2089 [Pseudomonas aeruginosa PAO1]
                           883
                           99.32
                           99.54
                           0
                           4512.0
     

     
     
238
                           PA2590_tr
                           translation of PA2590
                           888
                           64.41
                           76.46
                           9
                           2898.0
     

     
     
17032
                           gb|AAG05978.1|AE004687_7
                           (AE004687) hypothetical protein PA2590 [Pseudomonas aeruginosa PAO1]
                           888
                           64.41
                           76.46
                           9
                           2898.0
     

     
     
17033
                           gb|AAO55991.1|
                           (AE016864) TonB-dependent siderophore receptor, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           918
                           35.94
                           49.01
                           153
                           1320.0
     

     






      

          
GC ORFID: 43130How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2089Glimmer Score: 

          
Start: 1615540Stop: 1618191

          
Length: 2652


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2089 translation of PA2089Homolog Bit Score 1742.0

          
Other Homologs:  t_PA2590 (ORF: BLASTX 1118.0), t_PA2089 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAACCCGCGTTCGCCACGTCTTCGACTCGTCCCCGTGCTCTGCGCGGTCGGCCTGGCCTGCCTTGGC 
CAGCCCGGCGAGTCGGCGGCAGAGGAGGTCCGCGCCACCAGCCGCGCCGAGATCCAGCGCTTCGACATCCCG 
GCCGGCGAACTGGCCCAGGTACTGCTGAGCATCGTCCGCCAGAGTCGCACCCCGATCGCCTTCGACCAGCAC 
CTGGTGGAGGGCCTGCCGGCACCGGCGATCCAGGGCTCCTACAGCGTCGAGCAGGCGCTGCAGCGGGCCTTG 
CGGGGCAGCGGCCTGGAATACAGCCGCAGCGCCGCCGGCGTGCTCAGCCTGCAACGCGCCACGGCGCCGGAT 
GCCGCGCTGCCGGCGGCGAAGCCCGCCGGGACCCTGGCCACGGTGGTGGTCACCGGCACCCGCAAGGCCGAT 
GTCAAGGCCGGCGAGAGCCTGGCACCGATCGATGTGGTCAGCGCCGAGCAATTGCGCGACAGTGGCAGCGGC 
GACCTGCGCGACGCCCTGGTGCGCCTGCTGCCCTCGCTGTCGCGCCAGGCCCAGGCCTACAACGCTTCGGCG 
CTGACCAACGCGCAGTCGCTGCGCGGCCTGAGTCCCAACCACGTGCTGGTGCTGGTGAACGGCAAGCGCCGC 
CACGAGACCGCCAACATCAATGTCAGCGGCGGGCTGCAGAGCGGCTCCACCGGGGTCGACCTGGACACCATC 
CCGCTCGCCGCCATCGAGCGCATCGAGGTGCTGCGCGACGGCGCCTCGGCGCAGTACGGCTCGGACGCCATC 
GCCGGGGTGATCAACGTCATCCTCAAGTCGGCCGACCACGGCGGCCGGCTCGCCTACGACAACGGTCGCTAC 
GGCGATGGCGACGGCCTGACCCAGAACGGCGGGGTGAATGGCGGCCTGCGTTTCGGCGAGAGCGGTTTCCTC 
AACCTCAGCGCGCAGTTCCGCGAACAGGCGCGGACCATCCGCGCCGGCATCGACCAGCGTACCGGGCACTAC 
GGCAACCCGTCCATCGGCGACCCTTCGCTGCACCGCCAGGCGCTGGCCTACAACGCCGGCGTGGCGCTGGAC 
GACAACGTCGAGCTGTACAGCTTCGCCACCTATACCCATCGCTCGGTGTCCTCGGCGCAGATCTACCAGTTG 
CCGTCCCTGGCGCCGCGACTCTATCCGAACGGCTTCACCCCGCGCATCACCAGCGACGAGGACGACTATTCG 
CTGACCCTCGGCGCCCGTGGCGGCGAGCTGTTCGGCGCCTGGGACTGGGACCTCAGTTCCACCTACGGTGCC 
GACCGCCCGGAGATCGGCATGGACCATTCGATCAACCTCGCCCTCTACGGCGAGACCGGCGATTCGCCGCGG 
TCCTTCGACCTGGCGCGCTACAAGGCCACCCAGTGGACCAACAATCTCGACCTGCGCCGCGACTTCGACCTC 
GCCTGGCTGCCCGCGCCGCTGAATTTCTCCTGGGGCCTGGAGCAGCGCCGCGAGCTCTACGAGGTCGAGGCC 
GGCGATCCCTGGTCCTACTACAACGGCGGTTCCAAGGCGCTCCCCGGACAGGCGCCGGCCAGCGCCGGACAG 
TGGAGCCGCGACGTGCTCGGCGCCTATCTCGACCTGTCCACCGCCCTCGACGAGCGCTGGCAACTGGAGACG 
GCGGCGCGCTACGAGCACTACAGCGACTTCGGCAGCACCACCAACGGCAAGCTCGCCAGCCGCTACCGCTTC 
AGCCCCGAGGTGTCGGCGCGGGCCAGTCTCAGCAGCGGCTTCCGCGCGCCGTCGCTGGCCCAGGAGAACTAC 
ACCAGCCTGGGCGTCTCGCCGACCATCGCCAGCGGCCTGCTGGCGGTCAACTCGCCGGCGGCCAGGCTGCTC 
GGCGCCGAAGACCTGGAGCCGGAAAAGTCGATCAGCTACAACCTCGGCCTGGTGCTCGATCCCTTGCCGGAC 
CTGAACCTGGCCATCGACACCTATCGCATCGAGATCCGCGACCGCATCGTCGACGGTGCCACCTATTCCGGA 
CAGCCGGCGATCGATGCGCTGCGCGCCGGCGGGATCAGCATCCCGGCCGGACTGACCCAGGTCAGCACCCAC 
TACATGACCAACGGCGCCGACACCCGTACCCACGGCCTCGACCTCACCGCCAGCTACCTGACCCGGCTCGGC 
GAGTGGGGCCGGATCGACTGGCGCCTGGGCGCCAACGTCAATCGCACGAAGCTGGTCAGGAATCATCGCGGG 
CGCAACGGCCAGCCGCTGCTCAACGACCAGCAGCAGGCCTGGATCACCAGCTCCACGCCGCGCAGCCAGGTC 
AGCCTGCAGGCCGACTGGAGCTACCGGCGCTGGGGGCTGACCCTGCGCGAAACGCGCTACAGCAAGACGGTT 
TCCGAACTGGACTACTACACCGGCGAGCATGCCTATTCGACCACGGTCTTCAACCGCTTCGAGAACTCGCCC 
AAGTACATCACCGACGTCGCCCTGCGCTATGCGGCGAGCCGCAACCTGACCCTGAGCGCCGGGGCCAACAAT 
CTGTTCGACGTGAAGCCCGACAAGCTGCCGGCCGAGAGCGCCTACCTCGGCTTCAACCAGTACGACACCTAT 
GCCTCGCAGATCAGCTTCAACGGCGCCTTCTACTACCTCGGCGCGGCCTACACCTTCTAA