ViewGene
Locus Name:
GeneID:
Location:

GeneID:1279
TrivialName: PA14_61130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61130
PAO1 Ortholog Locus:PA4619
Sequence Length:1248
Protein Length:415
Start: 5451361
Stop: 5450114
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08007.1|AE004876_2 (AE004876) probable c-type cytochrome [Pseudomonas aeruginosa PAO1]
Identities = 413/415 (99%), Positives = 413/415 (99%)
Sequence:
ATGAAGCGCACCCTTTCCGGCCTCGCCCTGGCGCTGGCCGCGCTGTCGCCGTTCCTGGCCTCCGCCGCCGGC
GCCGACGCGGCGCTGGTCAAGCGCGGCGAATACCTCGCCCGCGCCGCCGACTGCATGGCCTGCCATACCGCC
GAGGGCGGCGCGCCGTTCGCCGGCGGACTGCCGATCCAGTCGCCGTTCGGCACCATCTACGGCACCAACATC
ACCCCGGACAAGGAACACGGCATCGGCGCCTACAGCGCCGACGAGTTCTTCGCCGCCCTTACCGAGGGCAAG
CGCAAGGACGGCGCCTACCTCTATCCGGCGATGCCCTACACCTCCTATCACCTGATCGAGCGCGAGGATGCC
GACGCCATCTACGCCTACCTGATGGCCCAGGAACCGATCGCCCGGCCGGCGCCGCAGACCAGCCTGAGCTTC
CCGTTCAACGTGCGCATGGGCCTGGCCGGCTGGAACCTGCTCTACGGCAAGAGCGTGCGCTTGCAGCCGGAG
GAAGGGCGCAGCGAGGCCTGGAAACGCGGGCAGTACATGGTCGAGGTGCTCGGCCACTGCGGCGAGTGCCAT
ACCCCGCGCAACCTGGCCGGCGCCCTGGAGCAGGACAAGCGCCTGAGCGGCGGCCTGCTCAACGGCTACCTG
GCGCCCAGCCTGCTGCCCGGCGACCTTGCCGCGCGCGGTTGGACCCAGCCGGACCTGGCGAGCTTCCTCAAG
CACGGCATGAGCGCCCAGGGCAGCATGTTCAACGAGATGTTCCCGGTGGTGCACCACAGCACCCAGCACCTC
GACGACGGCGACCTGGCGGCCATGGCCACCTACCTGCTCGGCGACCAGCCGCCGCCGGCCAAGGTGGTCCAG
GCGCTACCCGAGGCGCAGCTGAACGACAGCGGCAAGCGCGGTCGCCAGCAGTACCTCAACGTCTGCGCCGGC
TGCCACGGCGGCGAAGGCGAGGGCAAGCCGCATATCGCGGTGGCGATGAACGGCAACACTACCCTGCGCCTG
CAAGACCCGCGTAATCTGTTGCGAGTGATCGAAGACGGCATCGTCGAACAGCAGTTCACCGGCTTCGAACGC
ATGCAACCGATGCCCGGTTTCGCCGGGAAACTCGACGACGAGCAACTCACGGACCTGCTCAACTACCTGCGC
CAGACCTGGGGCGGATTGCCCGGTGACCTCGGTCCCCAACAGGTCGCGCAATTGAAGACGGAGAGCGCTTCG
GTGCATACCGTCAAGGTGAAGTGA
Translation:
MKRTLSGLALALAALSPFLASAAGADAALVKRGEYLARAADCMACHTAEGGAPFAGGLPIQSPFGTIYGTNI
TPDKEHGIGAYSADEFFAALTEGKRKDGAYLYPAMPYTSYHLIEREDADAIYAYLMAQEPIARPAPQTSLSF
PFNVRMGLAGWNLLYGKSVRLQPEEGRSEAWKRGQYMVEVLGHCGECHTPRNLAGALEQDKRLSGGLLNGYL
APSLLPGDLAARGWTQPDLASFLKHGMSAQGSMFNEMFPVVHHSTQHLDDGDLAAMATYLLGDQPPPAKVVQ
ALPEAQLNDSGKRGRQQYLNVCAGCHGGEGEGKPHIAVAMNGNTTLRLQDPRNLLRVIEDGIVEQQFTGFER
MQPMPGFAGKLDDEQLTDLLNYLRQTWGGLPGDLGPQQVAQLKTESASVHTVKVK*
AnnotationID:1288GeneID:1279
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 08:08:21
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c
Cell Localization:()
Synonyms:PA4619
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2010
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69813.1|AE016619_11 (AE016789) cytochrome c family protein [Pseudomonas putida KT2440]
          Length = 403

 Score =  652 bits (1682), Expect = 0.0
 Identities = 315/403 (78%), Positives = 351/403 (87%), Gaps = 4/403 (0%)

>dbj|BAA19754.1| (D86375) cytochrome-c subunit precursor of membrane-bound alcohol
           dehydrogenase [Gluconobacter oxydans]
          Length = 478

 Score =  273 bits (699), Expect = 1e-72
 Identities = 164/428 (38%), Positives = 233/428 (54%), Gaps = 33/428 (7%)








 
Structural Features:
COG2010, CccA, Cytochrome c, mono- and diheme variants 
[Energy production and conversion]
CD-Length = 150 residues,  87.3% aligned
Score = 55.0 bits (131), Expect = 4e-08
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 12/141 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2561




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19704




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31603




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1279_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1279
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2326
                           PA4619_tr
                           translation of PA4619
                           415
                           99.51
                           99.51
                           0
                           2180.0
     

     
     
75114
                           gb|AAG08007.1|AE004876_2
                           (AE004876) probable c-type cytochrome [Pseudomonas aeruginosa PAO1]
                           415
                           99.51
                           99.51
                           0
                           2180.0
     

     
     
75115
                           gb|AAN69813.1|AE016619_11
                           (AE016789) cytochrome c family protein [Pseudomonas putida KT2440]
                           417
                           75.53
                           84.17
                           16
                           1683.0
     

     
     
75117
                           emb|CAE39319.1|
                           (BX640435) cytochrome C [Bordetella parapertussis]
                           439
                           38.49
                           53.07
                           36
                           753.0
     

     
     
75118
                           emb|CAE34872.1|
                           (BX640450) cytochrome C [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           440
                           37.95
                           52.50
                           37
                           743.0
     

     






      

          
GC ORFID: 44281How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4619Glimmer Score: 

          
Start: 4715041Stop: 4713794

          
Length: 1248


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4619 translation of PA4619Homolog Bit Score 844.0

          
Other Homologs:  t_PA4619 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCGCACCCTTTCCGGCCTCGCCCTGGCGCTGGCCGCGCTGTCGCCGTTCCTGGCCTCCGCCGCCGGC 
GCCGACGCGGCGCTGGTCAAGCGCGGCGAATACCTCGCCCGCGCCGCCGACTGCATGGCCTGCCATACCGCC 
GAGGGCGGCGCGCCGTTCGCCGGCGGACTGCCGATCCAGTCGCCGTTCGGCACCATCTACGGCACCAACATC 
ACCCCGGACAAGGAACACGGCATCGGCGCCTACAGCGCCGACGAGTTCTTCGCCGCCCTTACCGAGGGCAAG 
CGCAAGGACGGCGCCTACCTCTATCCGGCGATGCCCTACACCTCCTATCACCTGATCGAGCGCGAGGATGCC 
GACGCCATCTACGCCTACCTGATGGCCCAGGAACCGATCGCCCGGCCGGCGCCGCAGACCAGCCTGAGCTTC 
CCGTTCAACGTGCGCATGGGCCTGGCCGGCTGGAACCTGCTCTACGGCAAGAGCGTGCGCTTGCAGCCGGAG 
GAAGGGCGCAGCGAGGCCTGGAAACGCGGGCAGTACATGGTCGAGGTGCTCGGCCACTGCGGCGAGTGCCAT 
ACCCCGCGCAACCTGGCCGGCGCCCTGGAGCAGGACAAGCGCCTGAGCGGCGGCCTGCTCAACGGCTACCTG 
GCGCCCAGCCTGCTGCCCGGCGACCTTGCCGCGCGCGGTTGGACCCAGCCGGACCTGGCGAGCTTCCTCAAG 
CACGGCATGAGCGCCCAGGGCAGCATGTTCAACGAGATGTTCCCGGTGGTGCACCACAGCACCCAGCACCTC 
GACGACGGCGACCTGGCGGCCATGGCCACCTACCTGCTCGGCGACCAGCCGCCGCCGGCCAAGGTGGTCCAG 
GCGCTACCCGAGGCGCAGCTGAACGACAGCGGCAAGCGCGGTCGCCAGCAGTACCTCAACGTCTGCGCCGGC 
TGCCACGGCGGCGAAGGCGAGGGCAAGCCGCATATCGCGGTGGCGATGAACGGCAACACTACCCTGCGCCTG 
CAAGACCCGCGTAATCTGTTGCGAGTGATCGAAGACGGCATCGTCGAACAGCAGTTCACCGGCTTCGAACGC 
ATGCAACCGATGCCCGGTTTCGCCGGGAAACTCGACGACGAGCAACTCACGGACCTGCTCAACTACCTGCGC 
CAGACCTGGGGCGGATTGCCCGGTGACCTCGGTCCCCAACAGGTCGCGCAATTGAAGACGGAGAGCGCTTCG 
GTGCATACCGTCAAGGTGAAGTGA