ViewGene

Locus Name:
GeneID:
Location:

GeneID:1277
TrivialName: PA14_39050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39050
PAO1 Ortholog Locus:PA1971
Sequence Length:1314
Protein Length:437
Start: 3481126
Stop: 3482439
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05359.1|AE004623_9 (AE004623) branched chain amino acid transporter BraZ [Pseudomonas aeruginosa PAO1]
Identities = 437/437 (100%), Positives = 437/437 (100%)
Sequence:
ATGAACGCTTTGAAAGGCCGGGACATCCTGGCGCTTGGTTTTATGACCTTTGCCCTGTTCGTCGGGGCCGGC
AACATCATCTTCCCGCCCATCGTCGGCTTGCAGTCCGGCCCCCATGTGTGGCTGGCGGCGCTGGGCTTCCTG
ATCACCGCGGTGGGGCTGCCGGTGATCACCGTGATCGCCCTGGCCAAGGTCGGCGGTTCGGTCGACGCCCTC
AGCCATCCGATCGGCAGGTATGCCGGCGGCCTGCTGGCGGCGGTCTGCTACCTGGCGGTCGGCCCGCTGTTC
GCCATTCCGCGCACCGCCACGGTGTCCTTCGAGGTCGGCGTGGTGCCGCTGCTCGGCGAGAGCGGCACGGCG
CTGTTCGTCTACAGCCTGGCGTACTTCCTCCTCGCCCTGGCCATCTCCCTCTACCCCGGTCGCCTGCTGGAC
ACCGTCGGACGCTTCCTCGCCCCGCTGAAGATCCTCGCCCTGGCGATTCTCGGCGTCGCCGCCTTCCTCTGG
CCCGCCGGCCCGATCGGCACGGCCCAGCCGGAGTACACCCAGGCCGCGTTCTCCCAGGGTTTCGTCAACGGC
TACCTGACCATGGACACCCTCGCCGCGCTGGTCTTCGGCATCGTCATCGTCAACGCCATCCGTTCCCGCGGC
GTGCAGTCGCCGCGGCTGATCACCCGCTACGCCATCGTCGCCGGGCTGATCGCCGGCGTCGGCCTGGTGCTG
GTCTACGTCAGCCTGTTCCGGCTCGGCGCCGGCAGCCATGCCATCGCCGCCGACGCCAGCAACGGCGCGGCG
GTCCTGCATGCCTACGTGCAACATACCTTCGGCAGCCTCGGCAGCTCGTTCCTGGCGGGACTTATCGCGCTG
GCCTGCCTGGTCACCGCGGTCGGCCTGACCTGCGCCTGCGCCGAGTACTTCTGCCAGCGCCTGCCGCTGTCC
TACCGCAGCCTGGTGATCATCCTGGCAGGGTTCTCCTTCATCGTTTCCAACCTCGGCCTGACCAAGCTGATC
CAGGTCTCGATCCCGGTGCTCACCGCGATCTATCCGCCCTGCATCGTGCTGGTGGCGCTGAGCTTCTGCATC
GGCCTCTGGCATTCGGCGACGCGCATCCTCGCCCCGGTGATGCTGGTTTCCCTGGCGTTCGGCGTGCTCGAT
GCCCTGAAGGCGGCGGGCCTGGGCCAGGACTTCCCGCAATGGCTGCTGCACCTGCCGCTGGCCGAACAGGGC
CTGGCCTGGCTGATCCCCTCGGTCGCCACTCTCGCCGCCTGCAGCCTGGTCGACCGCCTGCTGGGCAAGCCT
GCGCAAGTCGCCGCCTGA
Translation:
MNALKGRDILALGFMTFALFVGAGNIIFPPIVGLQSGPHVWLAALGFLITAVGLPVITVIALAKVGGSVDAL
SHPIGRYAGGLLAAVCYLAVGPLFAIPRTATVSFEVGVVPLLGESGTALFVYSLAYFLLALAISLYPGRLLD
TVGRFLAPLKILALAILGVAAFLWPAGPIGTAQPEYTQAAFSQGFVNGYLTMDTLAALVFGIVIVNAIRSRG
VQSPRLITRYAIVAGLIAGVGLVLVYVSLFRLGAGSHAIAADASNGAAVLHAYVQHTFGSLGSSFLAGLIAL
ACLVTAVGLTCACAEYFCQRLPLSYRSLVIILAGFSFIVSNLGLTKLIQVSIPVLTAIYPPCIVLVALSFCI
GLWHSATRILAPVMLVSLAFGVLDALKAAGLGQDFPQWLLHLPLAEQGLAWLIPSVATLAACSLVDRLLGKP
AQVAA*
AnnotationID:1286GeneID:1277
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:07
Gene Name:braZ
Confidence Code:1
GeneProduct:branched-chain amino acid transport carrier
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05525,COG1114
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69765.1|AE016612_11 (AE016789) branched-chain amino acid transport system III carrier
           protein [Pseudomonas putida KT2440]
          Length = 437

 Score =  676 bits (1743), Expect = 0.0
 Identities = 340/437 (77%), Positives = 381/437 (87%)

>gb|AAM84562.1|AE013702_1 (AE013702) branched chain amino acid transport system II carrier
           protein [Yersinia pestis KIM]
          Length = 439

 Score =  602 bits (1551), Expect = e-171
 Identities = 306/425 (72%), Positives = 344/425 (80%)

>gb|AAN78989.1|AE016756_172 (AE016756) Branched-chain amino acid transport system II carrier
           protein [Escherichia coli CFT073]
          Length = 439

 Score =  592 bits (1527), Expect = e-168
 Identities = 292/434 (67%), Positives = 346/434 (79%)

Structural Features:
pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein.
CD-Length = 428 residues, 100.0% aligned
Score =  441 bits (1137), Expect = 6e-125
Identities = 218/428 (50%), Positives = 294/428 (68%), Gaps = 3/428 (0%)

COG1114, BrnQ, Branched-chain amino acid permeases 
[Amino acid transport and metabolism]
CD-Length = 431 residues,  99.8% aligned
Score =  443 bits (1140), Expect = 2e-125
Identities = 227/430 (52%), Positives = 301/430 (70%), Gaps = 2/430 (0%)
Genomic Context:
Comment:
ReferenceID:2557
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19700
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32760
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1277_cdd.html
URL:
ReferenceID:34362
Author/Investigator(s): Hoshino T, Kose-Terai K, Uratani Y.
Title: Isolation of the braZ gene encoding the carrier for a novel branched-chain amino acid transport system in Pseudomonas aeruginosa PAO.
PubMed: 1900503
MedLine:
Source:
J Bacteriol. 1991 Mar;173(6):1855-61.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1900503
Homologs By Global Alignment
Gene ID:1277

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2323 PA1971_tr translation of PA1971 437 99.99 99.99 0 2181.0
75020 gb|AAG05359.1|AE004623_9 (AE004623) branched chain amino acid transporter BraZ [Pseudomonas aeruginosa PAO1] 437 99.99 99.99 0 2181.0
75021 dbj|BAA14253.1| (D90222) branched-chain amino acid transport carrier [Pseudomonas aeruginosa] 437 99.99 99.99 0 2181.0
75023 gb|AAO55722.1| (AE016863) branched-chain amino acid transport system II carrier protein [Pseudomonas syringae pv. tomato str. DC3000] 437 78.48 87.41 0 1738.0
75022 gb|AAN69765.1|AE016612_11 (AE016789) branched-chain amino acid transport system III carrier protein [Pseudomonas putida KT2440] 437 77.80 87.18 0 1743.0
GC ORFID: 44279How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1971Glimmer Score:
Start: 1472785Stop: 1471472
Length: 1314
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1971 translation of PA1971Homolog Bit Score 844.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1002 (ORF: BLASTX 678.0), t_PA1590 (ORF: BLASTX 479.0), t_PA1971 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGCTTTGAAAGGCCGGGACATCCTGGCGCTTGGTTTTATGACCTTTGCCCTGTTCGTCGGGGCCGGC
AACATCATCTTCCCGCCCATCGTCGGCTTGCAGTCCGGCCCCCATGTGTGGCTGGCGGCGCTGGGCTTCCTG
ATCACCGCGGTGGGGCTGCCGGTGATCACCGTGATCGCCCTGGCCAAGGTCGGCGGTTCGGTCGACGCCCTC
AGCCATCCGATCGGCAGGTATGCCGGCGGCCTGCTGGCGGCGGTCTGCTACCTGGCGGTCGGCCCGCTGTTC
GCCATTCCGCGCACCGCCACGGTGTCCTTCGAGGTCGGCGTGGTGCCGCTGCTCGGCGAGAGCGGCACGGCG
CTGTTCGTCTACAGCCTGGCGTACTTCCTCCTCGCCCTGGCCATCTCCCTCTACCCCGGTCGCCTGCTGGAC
ACCGTCGGACGCTTCCTCGCCCCGCTGAAGATCCTCGCCCTGGCGATTCTCGGCGTCGCCGCCTTCCTCTGG
CCCGCCGGCCCGATCGGCACGGCCCAGCCGGAGTACACCCAGGCCGCGTTCTCCCAGGGTTTCGTCAACGGC
TACCTGACCATGGACACCCTCGCCGCGCTGGTCTTCGGCATCGTCATCGTCAACGCCATCCGTTCCCGCGGC
GTGCAGTCGCCGCGGCTGATCACCCGCTACGCCATCGTCGCCGGGCTGATCGCCGGCGTCGGCCTGGTGCTG
GTCTACGTCAGCCTGTTCCGGCTCGGCGCCGGCAGCCATGCCATCGCCGCCGACGCCAGCAACGGCGCGGCG
GTCCTGCATGCCTACGTGCAACATACCTTCGGCAGCCTCGGCAGCTCGTTCCTGGCGGGACTTATCGCGCTG
GCCTGCCTGGTCACCGCGGTCGGCCTGACCTGCGCCTGCGCCGAGTACTTCTGCCAGCGCCTGCCGCTGTCC
TACCGCAGCCTGGTGATCATCCTGGCAGGGTTCTCCTTCATCGTTTCCAACCTCGGCCTGACCAAGCTGATC
CAGGTCTCGATCCCGGTGCTCACCGCGATCTATCCGCCCTGCATCGTGCTGGTGGCGCTGAGCTTCTGCATC
GGCCTCTGGCATTCGGCGACGCGCATCCTCGCCCCGGTGATGCTGGTTTCCCTGGCGTTCGGCGTGCTCGAT
GCCCTGAAGGCGGCGGGCCTGGGCCAGGACTTCCCGCAATGGCTGCTGCACCTGCCGCTGGCCGAACAGGGC
CTGGCCTGGCTGATCCCCTCGGTCGCCACTCTCGCCGCCTGCAGCCTGGTCGACCGCCTGCTGGGCAAGCCT
GCGCAAGTCGCCGCCTGA