ViewGene

Locus Name:
GeneID:
Location:

GeneID:1276
TrivialName: PA14_48890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48890
PAO1 Ortholog Locus:PA0727
Sequence Length:1299
Protein Length:432
Start: 4347501
Stop: 4346203
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04116.1|AE004508_1 (AE004508) hypothetical protein from bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 407/432 (94%), Positives = 419/432 (96%), Gaps = 2/432 (0%)
Sequence:
ATGAAGAAAGTGAAACCGATTCATCAAAACCGCCTCCTGTTGCAACCCGACGGACAACTGCTGGACTCCCCC
AAGGGACGGCTCTTCGTTGATTCCATAACGGGGGCGTTCACCGACCTGTCAGGGGTGCGCATCCTGCGGTGC
GGCGTGGATACGGTGCGGCAGTTGTACAACGGCAAACTCCGGCCGGAAGTCATGGCGCTGTTTGACCTCTCG
GTAGATGTGGTCGAGTTCGCCGGCTACGAGTGGTCCAAGGGCCGCATCGGTCGCGACTCTGGCTATCAGTAC
CGCCTGCAGAACGCTGAAATGGGTCTGATCCTGCTGATCAAGAACCACAACATCAAGGTCGACACCATTGGC
TCGCACCTCAAGATCGAGGTATCGCCTCACGCCCTCGATGGCGCCGATCCGCGGATCCTCCAGGGCGTGCTG
GATGACCTGGCCGCAGCGGTGCTGAGTCACTGCGAGACCAACCAAGCCGCTGTGCATATCGCCCTGGACGTA
CAAGGCTGGAAACCGCCTCGCGATTTGGTGGATCGCATGCATTGCCGCTCGCGTCGGGTGCGGCAAATCAGC
GGGATCGAGCGGATCGAGTTCGACGGCAACGCCTCTGTCTACGGGCGTGGCGAGACGTACATGTTCGGCTCG
GCCAACGGTCTGCAACTGTCGATCTATAACAAGACCCTCCAGGCTCGGGCCACCGACAAGCTCGACTATTGG
GAAAGCGTGTGGGCGACCTTGAACGGGGATCCGTTCGGCGATGGCGACCCAGCCTATAACCCCCTGGAGACG
GTCTGGCGCATCGAATTCCGCTTCCATCACTCGGTGGTGCAACAGTTCTCCGAAGGCTCGCGTATGGCCTCC
GGGGAGGTTATGGGCTGTCGCACCTATGAGGGGCTTTGCCCGCATCTGCAAGGGCTGTGGGGCTACGCCTGC
GAAAGCTTCAAGCTGCTGAGTCGGTCGGCGGTCTACGATCCCTTCTGGAGCCTGATCAGCCAGGACGCCCGC
GTCCAAGTTGAGTGCGATCCGCTGATCGAGCGCGCTGAGTACCGGCGCTATTACAAGACCGCCAAGGGCTTT
AGCGGGCGCAACTGCGAGATGTTCCTCGGCCAGTTCGTGAGCCTGATTGCGCGGGAGCGGATTCCCGCAAAA
AAAGCGATTGAGTCCGCCCGCAAATTGGAGTTCTGGCACGTTATCGAAGACCACTATCTCGCCAAGGGTTGG
ACTCGTCGCGATCTGGAAAGGCACATACACAAGCTGATGTGTGATCGGTATCTACGGCGGGGATACGCGATC
TGA
Translation:
MKKVKPIHQNRLLLQPDGQLLDSPKGRLFVDSITGAFTDLSGVRILRCGVDTVRQLYNGKLRPEVMALFDLS
VDVVEFAGYEWSKGRIGRDSGYQYRLQNAEMGLILLIKNHNIKVDTIGSHLKIEVSPHALDGADPRILQGVL
DDLAAAVLSHCETNQAAVHIALDVQGWKPPRDLVDRMHCRSRRVRQISGIERIEFDGNASVYGRGETYMFGS
ANGLQLSIYNKTLQARATDKLDYWESVWATLNGDPFGDGDPAYNPLETVWRIEFRFHHSVVQQFSEGSRMAS
GEVMGCRTYEGLCPHLQGLWGYACESFKLLSRSAVYDPFWSLISQDARVQVECDPLIERAEYRRYYKTAKGF
SGRNCEMFLGQFVSLIARERIPAKKAIESARKLEFWHVIEDHYLAKGWTRRDLERHIHKLMCDRYLRRGYAI
*
AnnotationID:1285GeneID:1276
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 17:05:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0727
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:hypothetical protein from bacteriophage Pf1
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:2555
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19698
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1276

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2322 PA0727_tr translation of PA0727 432 94.21 96.99 2 2183.0
75019 gb|AAG04116.1|AE004508_1 (AE004508) hypothetical protein from bacteriophage Pf1 [Pseudomonas aeruginosa PAO1] 432 94.21 96.99 2 2183.0
GC ORFID: 44278How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0727Glimmer Score:
Start: 606407Stop: 607705
Length: 1299
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0727 translation of PA0727Homolog Bit Score 844.0
Other Homologs: t_PA0727 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAAAGTGAAACCGATTCATCAAAACCGCCTCCTGTTGCAACCCGACGGACAACTGCTGGACTCCCCC
AAGGGACGGCTCTTCGTTGATTCCATAACGGGGGCGTTCACCGACCTGTCAGGGGTGCGCATCCTGCGGTGC
GGCGTGGATACGGTGCGGCAGTTGTACAACGGCAAACTCCGGCCGGAAGTCATGGCGCTGTTTGACCTCTCG
GTAGATGTGGTCGAGTTCGCCGGCTACGAGTGGTCCAAGGGCCGCATCGGTCGCGACTCTGGCTATCAGTAC
CGCCTGCAGAACGCTGAAATGGGTCTGATCCTGCTGATCAAGAACCACAACATCAAGGTCGACACCATTGGC
TCGCACCTCAAGATCGAGGTATCGCCTCACGCCCTCGATGGCGCCGATCCGCGGATCCTCCAGGGCGTGCTG
GATGACCTGGCCGCAGCGGTGCTGAGTCACTGCGAGACCAACCAAGCCGCTGTGCATATCGCCCTGGACGTA
CAAGGCTGGAAACCGCCTCGCGATTTGGTGGATCGCATGCATTGCCGCTCGCGTCGGGTGCGGCAAATCAGC
GGGATCGAGCGGATCGAGTTCGACGGCAACGCCTCTGTCTACGGGCGTGGCGAGACGTACATGTTCGGCTCG
GCCAACGGTCTGCAACTGTCGATCTATAACAAGACCCTCCAGGCTCGGGCCACCGACAAGCTCGACTATTGG
GAAAGCGTGTGGGCGACCTTGAACGGGGATCCGTTCGGCGATGGCGACCCAGCCTATAACCCCCTGGAGACG
GTCTGGCGCATCGAATTCCGCTTCCATCACTCGGTGGTGCAACAGTTCTCCGAAGGCTCGCGTATGGCCTCC
GGGGAGGTTATGGGCTGTCGCACCTATGAGGGGCTTTGCCCGCATCTGCAAGGGCTGTGGGGCTACGCCTGC
GAAAGCTTCAAGCTGCTGAGTCGGTCGGCGGTCTACGATCCCTTCTGGAGCCTGATCAGCCAGGACGCCCGC
GTCCAAGTTGAGTGCGATCCGCTGATCGAGCGCGCTGAGTACCGGCGCTATTACAAGACCGCCAAGGGCTTT
AGCGGGCGCAACTGCGAGATGTTCCTCGGCCAGTTCGTGAGCCTGATTGCGCGGGAGCGGATTCCCGCAAAA
AAAGCGATTGAGTCCGCCCGCAAATTGGAGTTCTGGCACGTTATCGAAGACCACTATCTCGCCAAGGGTTGG
ACTCGTCGCGATCTGGAAAGGCACATACACAAGCTGATGTGTGATCGGTATCTACGGCGGGGATACGCGATC
TGA