ViewGene
Locus Name:
GeneID:
Location:

GeneID:1275
TrivialName: PA14_67810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67810
PAO1 Ortholog Locus:PA5134
Sequence Length:1311
Protein Length:436
Start: 6054441
Stop: 6055751
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08519.1|AE004926_9 (AE004926) probable carboxyl-terminal protease [Pseudomonas aeruginosa PAO1]
Identities = 436/436 (100%), Positives = 436/436 (100%)
Sequence:
ATGCTGCATTGCTTCCGTCCCACCACCCTGGCGCTGGCCCTGCTGCTCGGCGCGGGCGCGGCCCAGGCTGCC
GACGCCCCGGCCGACGCCGCGCCACTGGCCAACGGTAGCAGTGCCCCGCTGCCCCTCGACGAGCTGCGTACC
TTCGCCGAGGTTCTCGACCGGGTGAAGGCCGCCTATGTCGAGCCAGTGGACGACAAGACCCTGCTGGAGAAC
GCCATCAAGGGCATGCTCAGCAACCTCGACCCGCACTCCGCCTACCTCGGCCCGGAGGACTTCGCCGAGCTG
CAGGAAAGCACCAGCGGCGAGTTCGGCGGCCTGGGCATCGAGGTCGGCAGCGAAGACGGCTTCATCAAGGTG
GTCTCGCCGATCGACGACACCCCCGCGGCCCGCGCCGGCATCCAGCCCGGCGACCTGATCGTGCAGATCGAT
GGCAAGCCGACCAAGGGCCAGTCGATGACCGAAGCGGTCGACAGCATGCGCGGCAAGGCCGGCTCCCCGATC
ACCCTGACCATCGTCCGCGATGGCGGCAGACCGTTCGACGTCGAACTCAAGCGCGCCATCATCAAGGTCAAG
AGCGTCAAGAGCCAGGTCCTCGAACCCGGCTACGCCTACCTGCGCATCACCCAGTTCCAGGTCAACACCGGC
GAGGAAGTGGTCAAGGCGCTGAACCAGCTGCGCAAGGACAACAAGGGCCGTCTCAAGGGCCTGGTCCTGGAC
CTGCGCAACAACCCCGGCGGCGTGCTGCAGTCCGCCGTCGAGGTAGCCGACGCCTTCCTCACCAAGGGCCTG
ATCGTCTACACCAAGGGCCGCATCGCCAACTCCGAGCTGCGCTTCAGCGCCGACCCGGCCGATCCCAGCGAC
AAAGTTCCGCTGGTGGTACTGATCAACGGTGGCAGCGCCTCGGCGGCGGAAATCGTCGCCGGTGCCCTGCAG
GACCAGAAGCGCGCGATCCTGATGGGCACCGACAGCTTCGGCAAGGGCTCGGTGCAGACCGTGCTGCCGCTG
AACAACGACCGCGCCCTGAAGCTCACCACCGCGCTCTACTACACCCCCAACGGGCGCTCCATCCAGGCCCAG
GGCATCGTTCCGGACATCGAGGTCGGACGCGCCAAGGTGACCCAGGAGCGGAGCAGCTTCGAGGGCTTCAAG
GAAGCCGACCTGCAGGGCCACCTGGCCAACGGCAACGGCGGCGCCGACCGCCCCACCGGCAAGCGTGCCGCG
CCGAGCGAGCGCCCGCAGGATTCCGACTACCAGCTCAGCCAGGCCCTTAGCCTGCTGAAAGGCCTGAGCGTC
ACCCGCGGCAACTGA
Translation:
MLHCFRPTTLALALLLGAGAAQAADAPADAAPLANGSSAPLPLDELRTFAEVLDRVKAAYVEPVDDKTLLEN
AIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGSEDGFIKVVSPIDDTPAARAGIQPGDLIVQID
GKPTKGQSMTEAVDSMRGKAGSPITLTIVRDGGRPFDVELKRAIIKVKSVKSQVLEPGYAYLRITQFQVNTG
EEVVKALNQLRKDNKGRLKGLVLDLRNNPGGVLQSAVEVADAFLTKGLIVYTKGRIANSELRFSADPADPSD
KVPLVVLINGGSASAAEIVAGALQDQKRAILMGTDSFGKGSVQTVLPLNNDRALKLTTALYYTPNGRSIQAQ
GIVPDIEVGRAKVTQERSSFEGFKEADLQGHLANGNGGADRPTGKRAAPSERPQDSDYQLSQALSLLKGLSV
TRGN*
AnnotationID:1284GeneID:1275
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:10
Gene Name:
Confidence Code:3
GeneProduct:putative carboxyl-terminal protease
Cell Localization:()
Synonyms:ctpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0793,smart00245,pfam03572
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70623.1|AE016705_3 (AE016793) carboxyl-terminal protease [Pseudomonas putida KT2440]
          Length = 438

 Score =  657 bits (1694), Expect = 0.0
 Identities = 349/440 (79%), Positives = 381/440 (86%), Gaps = 6/440 (1%)

>gb|AAO58755.1| (AE016875) carboxyl-terminal protease family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 445

 Score =  648 bits (1672), Expect = 0.0
 Identities = 344/446 (77%), Positives = 378/446 (84%), Gaps = 11/446 (2%)

>emb|CAD85693.1| (BX321862) carboxy-terminal processing protease [Nitrosomonas
           europaea ATCC 19718]
          Length = 476

 Score =  388 bits (996), Expect = e-107
 Identities = 206/393 (52%), Positives = 278/393 (70%), Gaps = 25/393 (6%)






 
Structural Features:
COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]
CD-Length = 406 residues,  95.6% aligned
Score =  376 bits (967), Expect = 2e-105
Identities = 197/393 (50%), Positives = 251/393 (63%), Gaps = 15/393 (3%)

smart00245, TSPc, tail specific protease
CD-Length = 193 residues,  99.5% aligned
Score =  188 bits (478), Expect = 1e-48
Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 8/196 (4%)

pfam03572, Peptidase_S41, Peptidase family S41B.
CD-Length = 166 residues,  98.8% aligned
Score =  188 bits (479), Expect = 1e-48
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 5/169 (2%)






   
Genomic Context:






   
Comment:
other possible gene name: prc


















    ReferenceID:2553




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19696




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34949




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1275_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1275
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2321
                           PA5134_tr
                           translation of PA5134
                           436
                           99.99
                           99.99
                           0
                           2182.0
     

     
     
74960
                           gb|AAG08519.1|AE004926_9
                           (AE004926) probable carboxyl-terminal protease [Pseudomonas aeruginosa PAO1]
                           436
                           99.99
                           99.99
                           0
                           2182.0
     

     
     
74961
                           gb|AAN70623.1|AE016705_3
                           (AE016793) carboxyl-terminal protease [Pseudomonas putida KT2440]
                           442
                           79.63
                           86.65
                           10
                           1704.0
     

     
     
74962
                           gb|AAO58755.1|
                           (AE016875) carboxyl-terminal protease family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           446
                           77.13
                           84.75
                           11
                           1683.0
     

     
     
74964
                           gb|AAR34296.1|
                           (AE017210) carboxy-terminal processing protease [Geobacter sulfurreducens PCA]
                           467
                           49.46
                           62.31
                           48
                           1020.0
     

     






      

          
GC ORFID: 44277How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5134Glimmer Score: 

          
Start: 5318126Stop: 5319436

          
Length: 1311


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5134 translation of PA5134Homolog Bit Score 845.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6932 (ORF: BLASTX 649.0), t_PA5134 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCATTGCTTCCGTCCCACCACCCTGGCGCTGGCCCTGCTGCTCGGCGCGGGCGCGGCCCAGGCTGCC 
GACGCCCCGGCCGACGCCGCGCCACTGGCCAACGGTAGCAGTGCCCCGCTGCCCCTCGACGAGCTGCGTACC 
TTCGCCGAGGTTCTCGACCGGGTGAAGGCCGCCTATGTCGAGCCAGTGGACGACAAGACCCTGCTGGAGAAC 
GCCATCAAGGGCATGCTCAGCAACCTCGACCCGCACTCCGCCTACCTCGGCCCGGAGGACTTCGCCGAGCTG 
CAGGAAAGCACCAGCGGCGAGTTCGGCGGCCTGGGCATCGAGGTCGGCAGCGAAGACGGCTTCATCAAGGTG 
GTCTCGCCGATCGACGACACCCCCGCGGCCCGCGCCGGCATCCAGCCCGGCGACCTGATCGTGCAGATCGAT 
GGCAAGCCGACCAAGGGCCAGTCGATGACCGAAGCGGTCGACAGCATGCGCGGCAAGGCCGGCTCCCCGATC 
ACCCTGACCATCGTCCGCGATGGCGGCAGACCGTTCGACGTCGAACTCAAGCGCGCCATCATCAAGGTCAAG 
AGCGTCAAGAGCCAGGTCCTCGAACCCGGCTACGCCTACCTGCGCATCACCCAGTTCCAGGTCAACACCGGC 
GAGGAAGTGGTCAAGGCGCTGAACCAGCTGCGCAAGGACAACAAGGGCCGTCTCAAGGGCCTGGTCCTGGAC 
CTGCGCAACAACCCCGGCGGCGTGCTGCAGTCCGCCGTCGAGGTAGCCGACGCCTTCCTCACCAAGGGCCTG 
ATCGTCTACACCAAGGGCCGCATCGCCAACTCCGAGCTGCGCTTCAGCGCCGACCCGGCCGATCCCAGCGAC 
AAAGTTCCGCTGGTGGTACTGATCAACGGTGGCAGCGCCTCGGCGGCGGAAATCGTCGCCGGTGCCCTGCAG 
GACCAGAAGCGCGCGATCCTGATGGGCACCGACAGCTTCGGCAAGGGCTCGGTGCAGACCGTGCTGCCGCTG 
AACAACGACCGCGCCCTGAAGCTCACCACCGCGCTCTACTACACCCCCAACGGGCGCTCCATCCAGGCCCAG 
GGCATCGTTCCGGACATCGAGGTCGGACGCGCCAAGGTGACCCAGGAGCGGAGCAGCTTCGAGGGCTTCAAG 
GAAGCCGACCTGCAGGGCCACCTGGCCAACGGCAACGGCGGCGCCGACCGCCCCACCGGCAAGCGTGCCGCG 
CCGAGCGAGCGCCCGCAGGATTCCGACTACCAGCTCAGCCAGGCCCTTAGCCTGCTGAAAGGCCTGAGCGTC 
ACCCGCGGCAACTGA