ViewGene

Locus Name:
GeneID:
Location:

GeneID:1272
TrivialName: PA14_64170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64170
PAO1 Ortholog Locus:PA4851
Sequence Length:1278
Protein Length:425
Start: 5716832
Stop: 5718109
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08236.1|AE004898_7 (AE004898) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 419/425 (98%), Positives = 420/425 (98%), Gaps = 4/425 (0%)
Sequence:
ATGAGCGAAAGCGTCATCACCCAATGTCCCCATTGCAGCACCAGTTTCCGCGTCAACGACGCGCAACTGGGC
GCCGCCAATGGCGCGGTCCGCTGCGGCACCTGCCTGAAAGTCTTCAACGCCCTGCAACACCAGGTCGGTGGC
GCGCCGCGCGCGAACGCTCCTTCGGCAGCCGAAGCGAAGCCGGCCGCCGCTCCGCCACCCGCGCCCAGCGTC
GCGGCCGCCACCTCGGCCGCGCCCCCGGCAGCGCGCCCGCGCGACGAAACCCTGTGGATCCATGACGACCTC
GACCTGGACAGCCTCAACCTCGACGAGGAACTGGCCAAGCTCGACGAATTCGAGCTGAACCAGGAGTTCTCC
AGCATCGAGAAGGCCCCGCGACCGGCGGAAAGCCTGCTGGCGCGCCGCGACGACGAACGCGATCCACATGAC
GAACGCTGGGCCGAGGCGCTGATCGCCGATGCCGAACCGGCCCAGCCGGCGCGCGGCAACCCGCGCCAGGAA
CCGAGCCTCGGCGAACCGCTGGCGGAAGAGCGGGTATCCTTCGTGCCGCTGCGCCGCGCCGAGGATCCGCCG
GAACTTCGCCTCAGCCTCGATGACGACGATGACGACGAGCCCAGCCTCGGCAAGCGCCGCCACGGACTGAGC
GCCCTGGATGAAGACGACGAGGAAAGCGCCGAGGAACAGTCCGTCGCGCCCCTGGGCAGCGCCCGCAAGCCG
GACGAGGCGCCGGTCGAGAGTCTCGACCAGTTGCGCGACGAGCCGCTGCAACTGGCCTGGGAGAAGCCCCGG
CGCCAATGGCCGCGGCGTCTCGGTTGGCTGCTGCTGATCCTGCTGGCGCTGGGTGGTCTCGCCGCTCAGTAC
GTCGCCTACCATTTCGACGAGCTGGCGCGCCAGGACGCCTATCGCCCCTGGTTCGCCCAGCTCTGCCCGGAA
ATCGGCTGCACCCTTCCCTCCAAGGTCGACGTGGAGCAGATCAGGAGCAGCAACCTGGTGGTCCGCAGCCAT
CCCGAATTCAGCGGCGCGCTGGTGGTCGACGCGATCATCTACAACCGCGCCAGCTTCTCGCAGCCGTTCCCG
CTGCTGGAACTGCGCTTCGCCGACCTCAACGGCCACCTCATCGCCAATCGCCGCTTCAAGCCCGGCGAGTAC
CTCGGCGGCGAGCTGGCCGGACGAACGGAAATGCCACCGCAGGTACCGATCCACGTGTCGCTGGACATCCTC
GACCCGGGTCCGAAGGCGGTGAACTACAGCCTGAGCTTCCATTCCCCGGAGTGA
Translation:
MSESVITQCPHCSTSFRVNDAQLGAANGAVRCGTCLKVFNALQHQVGGAPRANAPSAAEAKPAAAPPPAPSV
AAATSAAPPAARPRDETLWIHDDLDLDSLNLDEELAKLDEFELNQEFSSIEKAPRPAESLLARRDDERDPHD
ERWAEALIADAEPAQPARGNPRQEPSLGEPLAEERVSFVPLRRAEDPPELRLSLDDDDDDEPSLGKRRHGLS
ALDEDDEESAEEQSVAPLGSARKPDEAPVESLDQLRDEPLQLAWEKPRRQWPRRLGWLLLILLALGGLAAQY
VAYHFDELARQDAYRPWFAQLCPEIGCTLPSKVDVEQIRSSNLVVRSHPEFSGALVVDAIIYNRASFSQPFP
LLELRFADLNGHLIANRRFKPGEYLGGELAGRTEMPPQVPIHVSLDILDPGPKAVNYSLSFHSPE*
AnnotationID:1281GeneID:1272
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4851
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:2547
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19690
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35181
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1272_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1272

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2318 PA4851_tr translation of PA4851 425 98.58 98.82 4 2188.0
74796 gb|AAG08236.1|AE004898_7 (AE004898) hypothetical protein PA4851 [Pseudomonas aeruginosa PAO1] 425 98.58 98.82 4 2188.0
74798 gb|AAN70388.1|AE016680_8 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 482 47.30 56.63 88 965.0
74797 gb|AAO58292.1| (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 494 46.96 56.27 110 1028.0
GC ORFID: 44274How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4851Glimmer Score:
Start: 4980512Stop: 4981789
Length: 1278
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4851 translation of PA4851Homolog Bit Score 846.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5772 (ORF: BLASTX 384.0), t_PA4851 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGAAAGCGTCATCACCCAATGTCCCCATTGCAGCACCAGTTTCCGCGTCAACGACGCGCAACTGGGC
GCCGCCAATGGCGCGGTCCGCTGCGGCACCTGCCTGAAAGTCTTCAACGCCCTGCAACACCAGGTCGGTGGC
GCGCCGCGCGCGAACGCTCCTTCGGCAGCCGAAGCGAAGCCGGCCGCCGCTCCGCCACCCGCGCCCAGCGTC
GCGGCCGCCACCTCGGCCGCGCCCCCGGCAGCGCGCCCGCGCGACGAAACCCTGTGGATCCATGACGACCTC
GACCTGGACAGCCTCAACCTCGACGAGGAACTGGCCAAGCTCGACGAATTCGAGCTGAACCAGGAGTTCTCC
AGCATCGAGAAGGCCCCGCGACCGGCGGAAAGCCTGCTGGCGCGCCGCGACGACGAACGCGATCCACATGAC
GAACGCTGGGCCGAGGCGCTGATCGCCGATGCCGAACCGGCCCAGCCGGCGCGCGGCAACCCGCGCCAGGAA
CCGAGCCTCGGCGAACCGCTGGCGGAAGAGCGGGTATCCTTCGTGCCGCTGCGCCGCGCCGAGGATCCGCCG
GAACTTCGCCTCAGCCTCGATGACGACGATGACGACGAGCCCAGCCTCGGCAAGCGCCGCCACGGACTGAGC
GCCCTGGATGAAGACGACGAGGAAAGCGCCGAGGAACAGTCCGTCGCGCCCCTGGGCAGCGCCCGCAAGCCG
GACGAGGCGCCGGTCGAGAGTCTCGACCAGTTGCGCGACGAGCCGCTGCAACTGGCCTGGGAGAAGCCCCGG
CGCCAATGGCCGCGGCGTCTCGGTTGGCTGCTGCTGATCCTGCTGGCGCTGGGTGGTCTCGCCGCTCAGTAC
GTCGCCTACCATTTCGACGAGCTGGCGCGCCAGGACGCCTATCGCCCCTGGTTCGCCCAGCTCTGCCCGGAA
ATCGGCTGCACCCTTCCCTCCAAGGTCGACGTGGAGCAGATCAGGAGCAGCAACCTGGTGGTCCGCAGCCAT
CCCGAATTCAGCGGCGCGCTGGTGGTCGACGCGATCATCTACAACCGCGCCAGCTTCTCGCAGCCGTTCCCG
CTGCTGGAACTGCGCTTCGCCGACCTCAACGGCCACCTCATCGCCAATCGCCGCTTCAAGCCCGGCGAGTAC
CTCGGCGGCGAGCTGGCCGGACGAACGGAAATGCCACCGCAGGTACCGATCCACGTGTCGCTGGACATCCTC
GACCCGGGTCCGAAGGCGGTGAACTACAGCCTGAGCTTCCATTCCCCGGAGTGA