ViewGene
Locus Name:
GeneID:
Location:

GeneID:1271
TrivialName: PA14_49470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49470
PAO1 Ortholog Locus:PA1155
Sequence Length:1248
Protein Length:415
Start: 4397858
Stop: 4399105
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04544.1|AE004545_7 (AE004545) ribonucleoside reductase, small chain [Pseudomonas aeruginosa PAO1]
Identities = 415/415 (100%), Positives = 415/415 (100%)
Sequence:
ATGCTGAGCTGGGACGAATTCGACAAAGAAGACCCGACCGAAGCCAAGGCCGCGCCCGCCGCCGCCCAGGCC
GTTGCCCAGGGCCATGACAAGCTGGACGACGAAGCCGCCGGCTCGGTGGAAGAAGCGCGCGCCGTTTCCGCC
GACGACTCCGACGCTGTCGCCCGCGCCAAGAAGGCCCTGAACGACCTCGACATCCAGGAAGGCCTGGACGAC
CTCGAAGGCTCCGCCGCGCGCGTGCAGGTCGGCGACAAGCAGATGATCAACGCCCGCGCCGACCTCAACCAG
CTCGTCCCCTTCAAGTACGACTGGGCCTGGCAGAAGTATCTGGATGGTTGCGCCAACCACTGGATGCCGCAG
GAAGTCAACATGAACGCCGACATCGCCCTGTGGAAGAGCAAGGACGGCCTCAGCGAGGACGAGCGGCGCATC
GTCATGCGCAACCTCGGCTTCTTCTCCACCGCCGACTCGCTGGTCGCCAACAACCTGGTGCTGGCCGTGTAC
CGCCTGATCACCAACCCCGAGTGCCGCCAGTACATCCTGCGCCAGGCCTTCGAAGAGGCGATCCACACCCAC
GCCTACCAGTACTGCATCGAGTCGCTGGGCATGGACGAGGGCGAGATCTTCAACATGTACCACGAGATCCCC
AGCGTGGCGAAGAAGGCCTCCTGGGGCCTGAAGTACACCCGCTCGATCTCCGACCCGATGTTCCAGACCGGC
ACCCCGGAAACCGACCGCCAGTTCCTGCGCAACCTGATCGCCTACTACTGCGTGCTGGAAGGCATCTTCTTC
TACTGCGGCTTCACCCAGATCCTCTCCATGGGCCGCCGCAACAAGATGACCGGCACCGCCGAGCAGTTCCAG
TACATCCTCCGCGACGAGTCGATGCACCTGAACTTCGGCATCGACGTGATCAACCAGATCAAGATCGAGAAC
CCGCACCTGTGGGACGCCCAGATGAAGGACGAGGCGACCCAGATGATCCTCCAGGGCACCCAGCTGGAGATC
GAATACGCGCGCGACACCATGCCGCGCGGGGTGCTGGGCATGAACGCGGCGATGATGGAGGACTACCTGAAG
TTCATCGCCAACCGGCGCCTGACCCAGATCGGCCTGAAGGAAGAGTATCCGGGGACCACCAACCCGTTCCCG
TGGATGTCGGAGATCATGGACCTGAAGAAGGAGAAGAACTTCTTCGAGACGCGGGTTATCGAGTACCAGACG
GGCGGTGCCTTGAGCTGGGATTGA
Translation:
MLSWDEFDKEDPTEAKAAPAAAQAVAQGHDKLDDEAAGSVEEARAVSADDSDAVARAKKALNDLDIQEGLDD
LEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLSEDERRI
VMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIP
SVAKKASWGLKYTRSISDPMFQTGTPETDRQFLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQ
YILRDESMHLNFGIDVINQIKIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLK
FIANRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD*
AnnotationID:1280GeneID:1271
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 16:04:29
Gene Name:nrdB
Confidence Code:2
GeneProduct:ribonucleoside reductase, small chain
Cell Localization:()
Synonyms:PA1155
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0208, cd01049
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Purine metabolism; Pyrimidine metabolism 
Homology:






 
Structural Features:
COG0208, NrdF, Ribonucleotide reductase, beta subunit. Score: 353, 3e-98
cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit. Score: 298, 8e-82






   
Genomic Context:
Adjacent gene encodes large chain of ribonucleotide reductase (nrdA). 






   
Comment:


















    ReferenceID:2545




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19688




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1271
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2317
                           PA1155_tr
                           translation of PA1155
                           415
                           99.99
                           99.99
                           0
                           2185.0
     

     
     
74778
                           gb|AAG04544.1|AE004545_7
                           (AE004545) ribonucleoside reductase, small chain [Pseudomonas aeruginosa PAO1]
                           415
                           99.99
                           99.99
                           0
                           2185.0
     

     
     
74779
                           gb|AAN66801.1|AE016309_3
                           (AE016778) ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440]
                           416
                           86.77
                           90.62
                           1
                           1894.0
     

     
     
74780
                           gb|AAO55181.1|
                           (AE016861) ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           415
                           85.30
                           90.60
                           0
                           1873.0
     

     
     
74781
                           gb|AAO91051.1|
                           (AE016964) ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 493]
                           425
                           63.29
                           76.23
                           34
                           1460.0
     

     






      

          
GC ORFID: 44273How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1155Glimmer Score: 

          
Start: 556050Stop: 554803

          
Length: 1248


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1155 translation of PA1155Homolog Bit Score 846.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5950 (ORF: BLASTX 726.0), psyr_15may02_Scaffold5_revised_gene5970 (ORF: BLASTX 125.0), t_PA1155 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAGCTGGGACGAATTCGACAAAGAAGACCCGACCGAAGCCAAGGCCGCGCCCGCCGCCGCCCAGGCC 
GTTGCCCAGGGCCATGACAAGCTGGACGACGAAGCCGCCGGCTCGGTGGAAGAAGCGCGCGCCGTTTCCGCC 
GACGACTCCGACGCTGTCGCCCGCGCCAAGAAGGCCCTGAACGACCTCGACATCCAGGAAGGCCTGGACGAC 
CTCGAAGGCTCCGCCGCGCGCGTGCAGGTCGGCGACAAGCAGATGATCAACGCCCGCGCCGACCTCAACCAG 
CTCGTCCCCTTCAAGTACGACTGGGCCTGGCAGAAGTATCTGGATGGTTGCGCCAACCACTGGATGCCGCAG 
GAAGTCAACATGAACGCCGACATCGCCCTGTGGAAGAGCAAGGACGGCCTCAGCGAGGACGAGCGGCGCATC 
GTCATGCGCAACCTCGGCTTCTTCTCCACCGCCGACTCGCTGGTCGCCAACAACCTGGTGCTGGCCGTGTAC 
CGCCTGATCACCAACCCCGAGTGCCGCCAGTACATCCTGCGCCAGGCCTTCGAAGAGGCGATCCACACCCAC 
GCCTACCAGTACTGCATCGAGTCGCTGGGCATGGACGAGGGCGAGATCTTCAACATGTACCACGAGATCCCC 
AGCGTGGCGAAGAAGGCCTCCTGGGGCCTGAAGTACACCCGCTCGATCTCCGACCCGATGTTCCAGACCGGC 
ACCCCGGAAACCGACCGCCAGTTCCTGCGCAACCTGATCGCCTACTACTGCGTGCTGGAAGGCATCTTCTTC 
TACTGCGGCTTCACCCAGATCCTCTCCATGGGCCGCCGCAACAAGATGACCGGCACCGCCGAGCAGTTCCAG 
TACATCCTCCGCGACGAGTCGATGCACCTGAACTTCGGCATCGACGTGATCAACCAGATCAAGATCGAGAAC 
CCGCACCTGTGGGACGCCCAGATGAAGGACGAGGCGACCCAGATGATCCTCCAGGGCACCCAGCTGGAGATC 
GAATACGCGCGCGACACCATGCCGCGCGGGGTGCTGGGCATGAACGCGGCGATGATGGAGGACTACCTGAAG 
TTCATCGCCAACCGGCGCCTGACCCAGATCGGCCTGAAGGAAGAGTATCCGGGGACCACCAACCCGTTCCCG 
TGGATGTCGGAGATCATGGACCTGAAGAAGGAGAAGAACTTCTTCGAGACGCGGGTTATCGAGTACCAGACG 
GGCGGTGCCTTGAGCTGGGATTGA