ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1270

TrivialName: PA14_50340

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_50340

PAO1 Ortholog Locus: PA1087

Sequence Length: 1320

Protein Length: 439

Start: 4475688

Stop: 4474369

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04476.1|AE004539_18 (AE004539) flagellar hook-associated protein type 3 FlgL [Pseudomonas aeruginosa PAO1] Identities = 438/439 (99%), Positives = 438/439 (99%)

Sequence:

ATGCGCATTTCAACGATCCAGGCTTTCAACAACTCGGTCAGTGGCATCTCCCGCAACTATGCCGACCTGACG
CGCACCCAGGCCGAAATCAGTGCCGGCAAGCGCCTGCTGACCCCGGCCGACGACCCGGTCGGCGCCGTCCGG
CTGCTTCAGCTGAACCAGGAGCAGGCGCTCAACAGTCAGTACAAATCGGGCATCACGGCAGCGAAGAACAGC
CTGCAGCAGGAGGAGACCATCCTCAATTCGGTCGGCACGGTCATCCATCGTATCCGCGAGATCGCCGTGCAG
GCCGGCAACGGCGGCCTCGACGCCTCGGACAAGAACGCGCTGGCCACCGAACTGGCGCAGCGCGAGGACGAA
CTGCTGAACCTGCTCAACAGCCGCGACGCCAGCGGCAAGTACCTGTTCTCCGGCAGCCAGGGCGATACCCAG
CCGTTCGTTCGCAACCCGGACGGTACCTACTCCTACAACGGCGACGAAGGCCAGCGTGAGGTACAGATCGCC
AGCAGCACCTTCATTGCCATCAGCGACAACGGCAAGATCCTTTTCGAAAGCGGCAGCAACGCCAACCGGGTC
TCCACCGGCAAGGACGCCGCAGGCCTGGACGCCAGCGGCAACCCCAGCGACAGCAGCATCTCCCTGGGCCTG
GTGACGGACAAGGAAGCCTACGACACGGTGTTCCCGTCGAGCACGCCACCGCTGGCCAGCGATGGCGTCGGT
ATCCACTTCACCGACGCCAAGAACTACGTGGTCTACGACCTCAAGACGATCCCGCCGGGCTACGACTGGAGC
ACCAGCGACCCCAACCCGCCGAGCTTCGCCACGCTCGCCAGCGGCAAGATCGACGACAACGCCCAGACCAGC
GACTTCATCACCTTCGGCGGCGTCAAGGTACAGATCGACGGCGAGCCGCAGGGCGGCGACACCTTCAGTATC
AAGCGCCAGCCGGACCAGGAAAAGCGCAGCTTGCTCAATACCGTGTCGGACTTGCGCAAGGCCCTGCTCAGT
GCCGAGGACACTCCGGCTGGAAACCTGGCTATCCGCGACGCGGTGGGGGTGGCGATCTCCAACCTGGACTCG
TCGAACTCGCAGATCCTCACGGGCCAGGGACGCATCGGCGCGCGGATGAACGTCGCCGAATCGACGGAAACC
TTCATCGACGACGTGACCCTGGTGAATACCGCCGTGATCTCGCAGATCCAGGATCTGGACTACCCTGAAGCG
CTGTCACGGCTGACCCTGCAATCCACCATCATGGATGCGGCGCAGCAGAGTTTCGTCAAGATTCGCGGCTTG
AGCCTGTTCAACTACCTGAGTTAA

Translation:

MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNS
LQQEETILNSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQ
PFVRNPDGTYSYNGDEGQREVQIASSTFIAISDNGKILFESGSNANRVSTGKDAAGLDASGNPSDSSISLGL
VTDKEAYDTVFPSSTPPLASDGVGIHFTDAKNYVVYDLKTIPPGYDWSTSDPNPPSFATLASGKIDDNAQTS
DFITFGGVKVQIDGEPQGGDTFSIKRQPDQEKRSLLNTVSDLRKALLSAEDTPAGNLAIRDAVGVAISNLDS
SNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVISQIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGL
SLFNYLS*

AnnotationID:1279 GeneID:1270

AnnotatorUID: danlee

Modification Date/Time: 2004-05-20 16:04:03

Gene Name: flgL

Confidence Code: 2

GeneProduct: flagellar hook-associated protein type 3 FlgL

Cell Localization: ()

Synonyms: PA1087, flaK

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (16) Motility & Attachment

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1344

Secondary Functional Category(ies): Cell wall / LPS / capsule

EC Number:

Status: ACTIVE

Pathway:

Flagella assembly�

Homology:

Structural Features:

COG1344, FlgL, Flagellin and related hook-associated proteins. Score: 120, 2e-28
COG1344, FlgL, Flagellin and related hook-associated proteins. Score: 69.3, 8e-13

Genomic Context:

Cluster of flagellar biosynthetic genes from flgB through flgL�

Comment:

ReferenceID:2543

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19686

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1270

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2316 PA1087_tr translation of PA1087 439 99.77 99.77 0 2186.0

74776 gb|AAG04476.1|AE004539_18 (AE004539) flagellar hook-associated protein type 3 FlgL [Pseudomonas aeruginosa PAO1] 439 99.77 99.77 0 2186.0

74777 gb|AAK15325.1|AF332547_2 (AF332547) flagellar hook-associated protein type 3 FlgL [Pseudomonas aeruginosa] 439 67.42 78.81 6 1471.0

GC ORFID: `44272`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1087`	Glimmer Score:
Start: `478220`	Stop: `479539`
Length: `1320`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA1087 translation of PA1087`	Homolog Bit Score `846.0`
Other Homologs: `t_PA1087 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGCATTTCAACGATCCAGGCTTTCAACAACTCGGTCAGTGGCATCTCCCGCAACTATGCCGACCTGACG CGCACCCAGGCCGAAATCAGTGCCGGCAAGCGCCTGCTGACCCCGGCCGACGACCCGGTCGGCGCCGTCCGG CTGCTTCAGCTGAACCAGGAGCAGGCGCTCAACAGTCAGTACAAATCGGGCATCACGGCAGCGAAGAACAGC CTGCAGCAGGAGGAGACCATCCTCAATTCGGTCGGCACGGTCATCCATCGTATCCGCGAGATCGCCGTGCAG GCCGGCAACGGCGGCCTCGACGCCTCGGACAAGAACGCGCTGGCCACCGAACTGGCGCAGCGCGAGGACGAA CTGCTGAACCTGCTCAACAGCCGCGACGCCAGCGGCAAGTACCTGTTCTCCGGCAGCCAGGGCGATACCCAG CCGTTCGTTCGCAACCCGGACGGTACCTACTCCTACAACGGCGACGAAGGCCAGCGTGAGGTACAGATCGCC AGCAGCACCTTCATTGCCATCAGCGACAACGGCAAGATCCTTTTCGAAAGCGGCAGCAACGCCAACCGGGTC TCCACCGGCAAGGACGCCGCAGGCCTGGACGCCAGCGGCAACCCCAGCGACAGCAGCATCTCCCTGGGCCTG GTGACGGACAAGGAAGCCTACGACACGGTGTTCCCGTCGAGCACGCCACCGCTGGCCAGCGATGGCGTCGGT ATCCACTTCACCGACGCCAAGAACTACGTGGTCTACGACCTCAAGACGATCCCGCCGGGCTACGACTGGAGC ACCAGCGACCCCAACCCGCCGAGCTTCGCCACGCTCGCCAGCGGCAAGATCGACGACAACGCCCAGACCAGC GACTTCATCACCTTCGGCGGCGTCAAGGTACAGATCGACGGCGAGCCGCAGGGCGGCGACACCTTCAGTATC AAGCGCCAGCCGGACCAGGAAAAGCGCAGCTTGCTCAATACCGTGTCGGACTTGCGCAAGGCCCTGCTCAGT GCCGAGGACACTCCGGCTGGAAACCTGGCTATCCGCGACGCGGTGGGGGTGGCGATCTCCAACCTGGACTCG TCGAACTCGCAGATCCTCACGGGCCAGGGACGCATCGGCGCGCGGATGAACGTCGCCGAATCGACGGAAACC TTCATCGACGACGTGACCCTGGTGAATACCGCCGTGATCTCGCAGATCCAGGATCTGGACTACCCTGAAGCG CTGTCACGGCTGACCCTGCAATCCACCATCATGGATGCGGCGCAGCAGAGTTTCGTCAAGATTCGCGGCTTG AGCCTGTTCAACTACCTGAGTTAA