ViewGene
Locus Name:
GeneID:
Location:

GeneID:127
TrivialName: PA14_45970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45970
PAO1 Ortholog Locus:PA1429
Sequence Length:2709
Protein Length:902
Start: 4089217
Stop: 4086509
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04818.1|AE004572_6 (AE004572) probable cation-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
Identities = 899/902 (99%), Positives = 900/902 (99%)
Sequence:
ATGAACGGCATCCCACCCCTGTCTTCCCGCGACGCCCATGCCAGCCCGCCGCAACGGGTGCTGGAACGATTG
CACAGCTCCGCCGCCGGCCTGGACGCGGACGAGGCCGCCCGCCGCCTGGCGGCGCACGGCTACAACCGGTTG
CCCGCGCCGAAACGCCAGGGGCCGCTGCTGCGCTTGCTGCGGCAGTTCCACAACGTCCTGCTGTACATGATG
CTGTTCGCCTCGCTGGTCACCGCGCTGCTCGGCTTCTGGGTGGACAGTGCGGTAATCCTCCTGGCGGTGGTG
GTCAACGCGCTGATCGGTTTCGTCCAGGAGGGCAAGGCGGCCAACGCGCTGGACGCCATCCGCGACATGCTT
TCGCTGCATGCCCTGGTCCTGCGCGACGGCCAGCGCCAGGCGCTGGACGCTGAACGCCTGGTACCGGGCGAC
GTGGTGCTGCTGGCCTCCGGCGACCGGGTGCCGGCCGACCTGCGGCTGTTCGAAACGAAGAACTTCCATGTC
GACGAGTCGGCCCTGACCGGTGAGTCGGTGCCGGTGGAGAAGGGCTGCGTCGCGGTGGCCATCGACGCGCTG
CTCGGCGACCGCCGTTGCATGGCCTATTCCGGCACCCTGGTGACCAGCGGCCAGGCGCGCGGAGTGGTGGTC
GCCACCGCCGGGGATACCGAACTGGGCCGGATCGGTACGCTGTTGCGCGAAGTCCGCACCCTGGCCACTCCG
CTGCTGCGACAGATCGCCAGCTTCAGTCGCTGGCTGGCCCTGGCGATCCTGCTGCTGGCCGGCGCCACCTTC
GTCCTCGGCACCCTCTGGCAGGGCCAGCCGATGGTGGACATGTTCATGCTGGTGGTGGCGCTGACCGCCTCG
GCGATTCCCGAGGGGCTGCCGGCGATCATGACGGTGATCCTCGCCCTCGGCGTACAGCGCATGGCCCGGCGC
AACGCCATCGTCAGCCGCCTGCCGGCGGTGGAGACGCTGGGTTCGGTGACGGTGATCTGCTCGGACAAGACC
GGCACCCTGACCCGCAACGAGATGACCGTGCAGCGTATCGTCACCGCCGACCAGGTGATCGAGGTCAGCGGC
GCCGGCTACGCTCCGCTGGGTGGTTTCAGCCACAACGGCGAAGGCCTCGATCCCGCCGGACGCGACGATCTG
CAGGAGATCGGTCGCGCGGCGCTGTTGTGCAACGAGGCGCGCCTGCACCAGGAGGGCGAGGCATGGCAACTG
GAGGGCGACCCCACCGAAGGCGCGCTGCTCAGCCTCGGCCTCAAGCTGGGCCTCGATCCGCAGGCGCTGGCG
GCGGAACGGCCACGCAGCGATGCGATTCCGTTCGAGTCCGAGCATCGCTTCATGGCCACCCTGCACCACGAC
CACGCGGGCCAGGCGATGGTCTACCTGAAGGGCGCGCCGGAGCGCATCCTCGACATGTGCGAGGCTGAACGG
GTGGGCGACTCGGTGCGGTCGCTCGACCCGGATTACTGGCGGCGCCTGGCCACCGACACCGCCGCTCGCGGC
CTGCGCCTGCTGGCCATCGCCCGGCGGGCGATGCCGGCAGAGCAGCGCACGCTGGATTTCGCCGACGTGGAA
CATGGCTTCACCCTGTTGGCCCTGGTGGGCATCATCGATCCGCCGCGCGAGGAGGCCGTGGCCGCGGTCGCC
GAATGCCAGGCGGCGGGTATCGCGGTGAAGATGATCACCGGCGACCACGTCGACACCGCGCGGGCGATCGGC
GCCATGCTCGGGATCGGCATCGACCGGCCGGCGCTGACCGGCGCGGAGATCGAACTGCTCGACGACCAGCGC
CTGCGCGAAGTGCTGCCGGGCGTCGATGTGTTCGCCCGCGCCAGCCCCGAGCACAAGCTGCGCCTGGTGCAG
GCCCTGCAGGCCAGCGGCGAGGTGGTGGCGATGACCGGCGACGGGGTCAACGATGCGCCGGCGCTGAAGCGC
GCCGACGTCGGCGTAGCGATGGGCAACAAGGGCACCGAGGCGGCCAAGGAGGCGGCCGAGGTGGTCCTCGCC
GACGACAATTTCGCCACCATCGCCAATGCCGTGCGCGAGGGAAGGGCGGTCTACGACAACCTGAAGAAATTC
ATCCTCTTCATGCTGCCGACCAACGGTGGCGAGGCGCTGATCGTGATCGCCGCGATCCTGTTCCAGTTGACC
CTGCCGATGACGCCGGCGCAGATCCTCTGGATCAACATGGTCACCTCCAGCACCCTGGGCCTGGCGCTGGCC
TTCGATCCGGCCGAGCGCGGCCTGATGCAGCGTCCGCCGCGCCCGCCGGCGGAGCCCCTGTTGTCGCTGTTC
TTCGTCTGGCGGGTGCTGCTGGTCTCGCTGCTGATGATGGCGGGCGCCCTGGGCCTGTTCCTCTGGGAGCTG
GAGCATGGCACCGGGCTGGAGCGCGCGCGGACCATGGCGGTGAACAGCGTGGTGGTGTGCGAGATGTTCTAC
CTGCTCAACAGCCGGCATATCTACGATTCGGTGCTCAGCCGCGAGGGCCTGTTCGGCAACCGCCAGGTCTTG
CTGGCGATCGCCGCCTGCGTGGTGCTGCAACTGCTCTATACCTACGCGCCGCCGTTGCAGGCGCTGTTCGGC
TCGGTCGGCCTGGCCCCGGGCGAGTGGGCGCGGGTGCTGCTGGCCGGGCTCGGCCTGTTCTGTGTCGCCGAA
CTGGAAAAGTGGCTATGTCGCCGGGTCCGTGCCCGGCAGGCCTGA
Translation:
MNGIPPLSSRDAHASPPQRVLERLHSSAAGLDADEAARRLAAHGYNRLPAPKRQGPLLRLLRQFHNVLLYMM
LFASLVTALLGFWVDSAVILLAVVVNALIGFVQEGKAANALDAIRDMLSLHALVLRDGQRQALDAERLVPGD
VVLLASGDRVPADLRLFETKNFHVDESALTGESVPVEKGCVAVAIDALLGDRRCMAYSGTLVTSGQARGVVV
ATAGDTELGRIGTLLREVRTLATPLLRQIASFSRWLALAILLLAGATFVLGTLWQGQPMVDMFMLVVALTAS
AIPEGLPAIMTVILALGVQRMARRNAIVSRLPAVETLGSVTVICSDKTGTLTRNEMTVQRIVTADQVIEVSG
AGYAPLGGFSHNGEGLDPAGRDDLQEIGRAALLCNEARLHQEGEAWQLEGDPTEGALLSLGLKLGLDPQALA
AERPRSDAIPFESEHRFMATLHHDHAGQAMVYLKGAPERILDMCEAERVGDSVRSLDPDYWRRLATDTAARG
LRLLAIARRAMPAEQRTLDFADVEHGFTLLALVGIIDPPREEAVAAVAECQAAGIAVKMITGDHVDTARAIG
AMLGIGIDRPALTGAEIELLDDQRLREVLPGVDVFARASPEHKLRLVQALQASGEVVAMTGDGVNDAPALKR
ADVGVAMGNKGTEAAKEAAEVVLADDNFATIANAVREGRAVYDNLKKFILFMLPTNGGEALIVIAAILFQLT
LPMTPAQILWINMVTSSTLGLALAFDPAERGLMQRPPRPPAEPLLSLFFVWRVLLVSLLMMAGALGLFLWEL
EHGTGLERARTMAVNSVVVCEMFYLLNSRHIYDSVLSREGLFGNRQVLLAIAACVVLQLLYTYAPPLQALFG
SVGLAPGEWARVLLAGLGLFCVAELEKWLCRRVRARQA*
AnnotationID:137GeneID:127
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:13
Gene Name:
Confidence Code:3
GeneProduct:putative cation-transporting P-type ATPase
Cell Localization:()
Synonyms:PA1429
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0474,pfam00122,COG2216
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD84529.1| (BX321858) mono valent cation-transporting P-type ATPase
           [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score = 1081 bits (2795), Expect = 0.0
 Identities = 561/886 (63%), Positives = 667/886 (75%)

>dbj|BAB98939.1| (AP005278) Cation transport ATPases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 892

 Score =  760 bits (1962), Expect = 0.0
 Identities = 418/895 (46%), Positives = 578/895 (64%), Gaps = 14/895 (1%)

>gb|AAM87276.1|AE013976_4 (AE013976) putative cation transport protein [Yersinia pestis KIM]
          Length = 908

 Score =  753 bits (1944), Expect = 0.0
 Identities = 402/912 (44%), Positives = 573/912 (62%), Gaps = 34/912 (3%)






 
Structural Features:
COG0474, MgtA, Cation transport ATPase 
[Inorganic ion transport and metabolism]
CD-Length = 917 residues,  96.8% aligned
Score =  820 bits (2120), Expect = 0.0
Identities = 385/906 (42%), Positives = 530/906 (58%), Gaps = 41/906 (4%)

pfam00122, E1-E2_ATPase, E1-E2 ATPase.
CD-Length = 223 residues, 100.0% aligned
Score =  224 bits (574), Expect = 3e-59
Identities = 108/235 (45%), Positives = 149/235 (63%), Gaps = 12/235 (5%)

COG2216, KdpB, High-affinity K+ transport system, ATPase chain B 
[Inorganic ion transport and metabolism]
CD-Length = 681 residues,  73.9% aligned
Score =  167 bits (424), Expect = 6e-42
Identities = 172/628 (27%), Positives = 250/628 (39%), Gaps = 116/628 (18%)







   
Genomic Context:






   
Comment:


















    ReferenceID:257




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17399




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37419




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:127_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:127
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
236
                           PA1429_tr
                           translation of PA1429
                           902
                           99.66
                           99.77
                           0
                           4511.0
     

     
     
17005
                           gb|AAG04818.1|AE004572_6
                           (AE004572) probable cation-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
                           902
                           99.66
                           99.77
                           0
                           4511.0
     

     
     
17006
                           emb|CAD84529.1|
                           (BX321858) mono valent cation-transporting P-type ATPase [Nitrosomonas europaea ATCC 19718]
                           913
                           61.88
                           73.49
                           12
                           2787.0
     

     
     
17007
                           emb|CAE26702.1|
                           (BX572596) putative cation-transporting P-type ATPase [Rhodopseudomonas palustris CGA009]
                           922
                           50.21
                           66.48
                           28
                           2233.0
     

     
     
17012
                           emb|CAA98413.1|
                           (BX842578) PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF [Mycobacterium tuberculosis H37Rv]
                           912
                           47.80
                           61.73
                           17
                           1932.0
     

     






      

          
GC ORFID: 43129How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1429Glimmer Score: 

          
Start: 864692Stop: 867400

          
Length: 2709


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1429 translation of PA1429Homolog Bit Score 1742.0

          
Other Homologs:  t_PA1429 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGCATCCCACCCCTGTCTTCCCGCGACGCCCATGCCAGCCCGCCGCAACGGGTGCTGGAACGATTG 
CACAGCTCCGCCGCCGGCCTGGACGCGGACGAGGCCGCCCGCCGCCTGGCGGCGCACGGCTACAACCGGTTG 
CCCGCGCCGAAACGCCAGGGGCCGCTGCTGCGCTTGCTGCGGCAGTTCCACAACGTCCTGCTGTACATGATG 
CTGTTCGCCTCGCTGGTCACCGCGCTGCTCGGCTTCTGGGTGGACAGTGCGGTAATCCTCCTGGCGGTGGTG 
GTCAACGCGCTGATCGGTTTCGTCCAGGAGGGCAAGGCGGCCAACGCGCTGGACGCCATCCGCGACATGCTT 
TCGCTGCATGCCCTGGTCCTGCGCGACGGCCAGCGCCAGGCGCTGGACGCTGAACGCCTGGTACCGGGCGAC 
GTGGTGCTGCTGGCCTCCGGCGACCGGGTGCCGGCCGACCTGCGGCTGTTCGAAACGAAGAACTTCCATGTC 
GACGAGTCGGCCCTGACCGGTGAGTCGGTGCCGGTGGAGAAGGGCTGCGTCGCGGTGGCCATCGACGCGCTG 
CTCGGCGACCGCCGTTGCATGGCCTATTCCGGCACCCTGGTGACCAGCGGCCAGGCGCGCGGAGTGGTGGTC 
GCCACCGCCGGGGATACCGAACTGGGCCGGATCGGTACGCTGTTGCGCGAAGTCCGCACCCTGGCCACTCCG 
CTGCTGCGACAGATCGCCAGCTTCAGTCGCTGGCTGGCCCTGGCGATCCTGCTGCTGGCCGGCGCCACCTTC 
GTCCTCGGCACCCTCTGGCAGGGCCAGCCGATGGTGGACATGTTCATGCTGGTGGTGGCGCTGACCGCCTCG 
GCGATTCCCGAGGGGCTGCCGGCGATCATGACGGTGATCCTCGCCCTCGGCGTACAGCGCATGGCCCGGCGC 
AACGCCATCGTCAGCCGCCTGCCGGCGGTGGAGACGCTGGGTTCGGTGACGGTGATCTGCTCGGACAAGACC 
GGCACCCTGACCCGCAACGAGATGACCGTGCAGCGTATCGTCACCGCCGACCAGGTGATCGAGGTCAGCGGC 
GCCGGCTACGCTCCGCTGGGTGGTTTCAGCCACAACGGCGAAGGCCTCGATCCCGCCGGACGCGACGATCTG 
CAGGAGATCGGTCGCGCGGCGCTGTTGTGCAACGAGGCGCGCCTGCACCAGGAGGGCGAGGCATGGCAACTG 
GAGGGCGACCCCACCGAAGGCGCGCTGCTCAGCCTCGGCCTCAAGCTGGGCCTCGATCCGCAGGCGCTGGCG 
GCGGAACGGCCACGCAGCGATGCGATTCCGTTCGAGTCCGAGCATCGCTTCATGGCCACCCTGCACCACGAC 
CACGCGGGCCAGGCGATGGTCTACCTGAAGGGCGCGCCGGAGCGCATCCTCGACATGTGCGAGGCTGAACGG 
GTGGGCGACTCGGTGCGGTCGCTCGACCCGGATTACTGGCGGCGCCTGGCCACCGACACCGCCGCTCGCGGC 
CTGCGCCTGCTGGCCATCGCCCGGCGGGCGATGCCGGCAGAGCAGCGCACGCTGGATTTCGCCGACGTGGAA 
CATGGCTTCACCCTGTTGGCCCTGGTGGGCATCATCGATCCGCCGCGCGAGGAGGCCGTGGCCGCGGTCGCC 
GAATGCCAGGCGGCGGGTATCGCGGTGAAGATGATCACCGGCGACCACGTCGACACCGCGCGGGCGATCGGC 
GCCATGCTCGGGATCGGCATCGACCGGCCGGCGCTGACCGGCGCGGAGATCGAACTGCTCGACGACCAGCGC 
CTGCGCGAAGTGCTGCCGGGCGTCGATGTGTTCGCCCGCGCCAGCCCCGAGCACAAGCTGCGCCTGGTGCAG 
GCCCTGCAGGCCAGCGGCGAGGTGGTGGCGATGACCGGCGACGGGGTCAACGATGCGCCGGCGCTGAAGCGC 
GCCGACGTCGGCGTAGCGATGGGCAACAAGGGCACCGAGGCGGCCAAGGAGGCGGCCGAGGTGGTCCTCGCC 
GACGACAATTTCGCCACCATCGCCAATGCCGTGCGCGAGGGAAGGGCGGTCTACGACAACCTGAAGAAATTC 
ATCCTCTTCATGCTGCCGACCAACGGTGGCGAGGCGCTGATCGTGATCGCCGCGATCCTGTTCCAGTTGACC 
CTGCCGATGACGCCGGCGCAGATCCTCTGGATCAACATGGTCACCTCCAGCACCCTGGGCCTGGCGCTGGCC 
TTCGATCCGGCCGAGCGCGGCCTGATGCAGCGTCCGCCGCGCCCGCCGGCGGAGCCCCTGTTGTCGCTGTTC 
TTCGTCTGGCGGGTGCTGCTGGTCTCGCTGCTGATGATGGCGGGCGCCCTGGGCCTGTTCCTCTGGGAGCTG 
GAGCATGGCACCGGGCTGGAGCGCGCGCGGACCATGGCGGTGAACAGCGTGGTGGTGTGCGAGATGTTCTAC 
CTGCTCAACAGCCGGCATATCTACGATTCGGTGCTCAGCCGCGAGGGCCTGTTCGGCAACCGCCAGGTCTTG 
CTGGCGATCGCCGCCTGCGTGGTGCTGCAACTGCTCTATACCTACGCGCCGCCGTTGCAGGCGCTGTTCGGC 
TCGGTCGGCCTGGCCCCGGGCGAGTGGGCGCGGGTGCTGCTGGCCGGGCTCGGCCTGTTCTGTGTCGCCGAA 
CTGGAAAAGTGGCTATGTCGCCGGGTCCGTGCCCGGCAGGCCTGA