ViewGene
Locus Name:
GeneID:
Location:

GeneID:1268
TrivialName: PA14_61960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61960
PAO1 Ortholog Locus:PA4684
Sequence Length:1299
Protein Length:432
Start: 5524691
Stop: 5525989
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08071.1|AE004882_2 (AE004882) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 432/432 (100%), Positives = 432/432 (100%)
Sequence:
ATGATCGACCCCCGACGCGTACTGCGTGCGCTTGCCGAACACTGGGCCCTGCTCGAGCCTCTCTGCGAGCGC
TTCGATGCCGGCACCCTGAGCCTGGCGGAACTGCGCAGCCAGTTGAACACCCAGTTACCGGAAAGCAACCCG
GCGGAAATCACCGCCCTGCTCGACCAGTGGATCCGCCTGGATATCCTGGTCCCGGTGGCCAAGAGCCCCAAC
CGTTTCGAGCTGAACGCGCAGATCCACGACTTCCTCGCCTACCTGCGCCACGAGCATCGCCTTGGTCTGTGC
CTGGAGATCGAGGCCTACCTGCGCCATCTGGAGCGCCTCGCCGGGTACATCCAGGACGCCTTCGAGACCCGC
GACAGCCAGGACCTGGCGCGCCAGCTGCGACTGCTCGACATGCGCGTGCGCGATGTACTGAAGAAGCTCGGC
AATGACGAGCAGGCACTGATCGGCGTGGCCGAGCGGGCCAAGACCAGCGACCGGCAGATTCCCCTGGCGCAG
CGCTACGCGGAGGTCCTGGCGACCTGGGACGAGTACGTCGAGCCGATGATCCAGCTGGTCAGCGCCGACGGC
GCCTTCGAGCAGGGCGTGCGGCGGGTCGAACAGGTCCTGCTGCGCCTGCTAGGCGAACAGCAGCGCCTCGGC
CACCTGGTCGACGACGACCTGGTGCTGCGCACCCACGCGCGCATCCTCGAGATGCAGACCAACGCCCAGCTG
ACCCTGCGCCGCGCCCGCGAATTATTGCTGCCGCTGCGCGAGGAAGCGCGCCGGCACAACGCGGTGACCCGT
GGCGCCGCCCTGGCGCTGGCGGCGATCCGGCGCAAGGGCCTGGATGCCGTGCCGCAGGCGGCGATGCCGCTG
TTCACCCGGCCGCAGAGCACCTTCCTCGGCACCGCCTCGCAGGTCGAGAGCTACGTCTTCGCCCTCGCCCGC
TTCGAGCCGAAGCCGGCGCAGTTCCCCAAGTCCAGCGGCACGCGCAAGAGCAACGGGCCGGCGCGACCACCG
CGGACCGCGCGGGAAATGATCGAGCGCTGCCAGGCGGCGCTGCCGCTGCCGGACCTCATGCAATGGCTGCTG
GCCCAGGAACCGGACGGCGCCACCGACGAGTTGCTCTACTGGTTCTCCCGGCTGTCGCGCGACGCGCGCTTC
CAGCGCGAACGCCTGCAACGCCGCGAGTACGAAACCACCGAACATTGCGTCAGCCTCTGCTCCTTCGCCCTG
AACCCCGCCGCCAAGGACAAGGGCCAGGCCAGGGACGCAGACACCCTTTCCGCGAGCGAAACCCATGCATCT
TGA
Translation:
MIDPRRVLRALAEHWALLEPLCERFDAGTLSLAELRSQLNTQLPESNPAEITALLDQWIRLDILVPVAKSPN
RFELNAQIHDFLAYLRHEHRLGLCLEIEAYLRHLERLAGYIQDAFETRDSQDLARQLRLLDMRVRDVLKKLG
NDEQALIGVAERAKTSDRQIPLAQRYAEVLATWDEYVEPMIQLVSADGAFEQGVRRVEQVLLRLLGEQQRLG
HLVDDDLVLRTHARILEMQTNAQLTLRRARELLLPLREEARRHNAVTRGAALALAAIRRKGLDAVPQAAMPL
FTRPQSTFLGTASQVESYVFALARFEPKPAQFPKSSGTRKSNGPARPPRTAREMIERCQAALPLPDLMQWLL
AQEPDGATDELLYWFSRLSRDARFQRERLQRREYETTEHCVSLCSFALNPAAKDKGQARDADTLSASETHAS
*
AnnotationID:1277GeneID:1268
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 08:08:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4684
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2539




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19682




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37601




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1268_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1268
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2314
                           PA4684_tr
                           translation of PA4684
                           432
                           99.99
                           99.99
                           0
                           2192.0
     

     
     
74734
                           gb|AAG08071.1|AE004882_2
                           (AE004882) hypothetical protein PA4684 [Pseudomonas aeruginosa PAO1]
                           432
                           99.99
                           99.99
                           0
                           2192.0
     

     
     
74735
                           gb|AAO54524.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           432
                           81.48
                           88.42
                           7
                           1759.0
     

     
     
74736
                           gb|AAN66320.1|AE016260_6
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           448
                           77.45
                           84.59
                           20
                           1734.0
     

     






      

          
GC ORFID: 44270How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4684Glimmer Score: 

          
Start: 4788371Stop: 4789669

          
Length: 1299


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4684 translation of PA4684Homolog Bit Score 848.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5158 (ORF: BLASTX 685.0), t_PA4684 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGACCCCCGACGCGTACTGCGTGCGCTTGCCGAACACTGGGCCCTGCTCGAGCCTCTCTGCGAGCGC 
TTCGATGCCGGCACCCTGAGCCTGGCGGAACTGCGCAGCCAGTTGAACACCCAGTTACCGGAAAGCAACCCG 
GCGGAAATCACCGCCCTGCTCGACCAGTGGATCCGCCTGGATATCCTGGTCCCGGTGGCCAAGAGCCCCAAC 
CGTTTCGAGCTGAACGCGCAGATCCACGACTTCCTCGCCTACCTGCGCCACGAGCATCGCCTTGGTCTGTGC 
CTGGAGATCGAGGCCTACCTGCGCCATCTGGAGCGCCTCGCCGGGTACATCCAGGACGCCTTCGAGACCCGC 
GACAGCCAGGACCTGGCGCGCCAGCTGCGACTGCTCGACATGCGCGTGCGCGATGTACTGAAGAAGCTCGGC 
AATGACGAGCAGGCACTGATCGGCGTGGCCGAGCGGGCCAAGACCAGCGACCGGCAGATTCCCCTGGCGCAG 
CGCTACGCGGAGGTCCTGGCGACCTGGGACGAGTACGTCGAGCCGATGATCCAGCTGGTCAGCGCCGACGGC 
GCCTTCGAGCAGGGCGTGCGGCGGGTCGAACAGGTCCTGCTGCGCCTGCTAGGCGAACAGCAGCGCCTCGGC 
CACCTGGTCGACGACGACCTGGTGCTGCGCACCCACGCGCGCATCCTCGAGATGCAGACCAACGCCCAGCTG 
ACCCTGCGCCGCGCCCGCGAATTATTGCTGCCGCTGCGCGAGGAAGCGCGCCGGCACAACGCGGTGACCCGT 
GGCGCCGCCCTGGCGCTGGCGGCGATCCGGCGCAAGGGCCTGGATGCCGTGCCGCAGGCGGCGATGCCGCTG 
TTCACCCGGCCGCAGAGCACCTTCCTCGGCACCGCCTCGCAGGTCGAGAGCTACGTCTTCGCCCTCGCCCGC 
TTCGAGCCGAAGCCGGCGCAGTTCCCCAAGTCCAGCGGCACGCGCAAGAGCAACGGGCCGGCGCGACCACCG 
CGGACCGCGCGGGAAATGATCGAGCGCTGCCAGGCGGCGCTGCCGCTGCCGGACCTCATGCAATGGCTGCTG 
GCCCAGGAACCGGACGGCGCCACCGACGAGTTGCTCTACTGGTTCTCCCGGCTGTCGCGCGACGCGCGCTTC 
CAGCGCGAACGCCTGCAACGCCGCGAGTACGAAACCACCGAACATTGCGTCAGCCTCTGCTCCTTCGCCCTG 
AACCCCGCCGCCAAGGACAAGGGCCAGGCCAGGGACGCAGACACCCTTTCCGCGAGCGAAACCCATGCATCT 
TGA