ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1267

TrivialName: PA14_37820

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37820

PAO1 Ortholog Locus: PA2063

Sequence Length: 1224

Protein Length: 407

Start: 3373338

Stop: 3372115

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05451.1|AE004633_2 (AE004633) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 406/407 (99%), Positives = 406/407 (99%)

Sequence:

ATGGACGATCTCTCCCCCGATTCCGCCTTGCCGCCTGCCGGCAGCGCCCAGGACAACGACGCGCCGCGCCAG
TTGGTGGTCTGCATCGACGGAACCTCGAACCGCTTCGGCGACCAGCCGACCAACGTGGTGCGCCTGTACCGC
TCGCTGTCGCGCGATCCGCGCAGGGTGCTGGCCTACTACGACCAAGGCGTCGGCACCTTCGGCCTGAAGGAA
ACCCTGTTCGAGTGGCAGAAGTTTCCCTCGCGGATCGCCGGCCTGGCCTTCGGCTGGGGGCTCAAGCGCAAC
GTCGAGGGCGCCTATCGCTTCCTCGCCGAGCACTACCGGCCCGGCGACCAGATATTCCTCTTCGGCTTTTCC
CGTGGCGCCTACGCGGTGCGCGTGCTGGCCGCGATGCTGCGTGCGGTGGGCCTGATCGATGCGCACCAGCCG
CACCTCTTCGACTACGCCTGGACCCTGCTCACCACCCGCATGCCGCCCCGCGCCGAAGACAAGCGGGCCGGC
ACGCGTCGCCGCGGGCCGGACTTCGGCCTGCTGGGACGCTTCCGCAAGGTCTTCGGCCGGCAGGTGAAGGTG
CACTTCCTCGGCCTGTTCGACACCGTGACCTCGGTGGGCTGGGTCTACGACCCGCTGACCGTGCCGTATTCC
TCGAACAACGAAATGGTCGACGTGGTCCGCCAGGCCCTGGCCATCGACGAATGCCGCTGCTTCTTCCGGCAG
AACCTCTGGTTCGGCGAGAAGGACCGCAAGTCCGACGTGTTGCAGGTGTGGTTCCCCGGCATGCACTCCGAT
GTCGGCGGTGGCTATGCGCCGAAGGACTCGCGGCTGGCCCTGGTGGCCTTTACCTGGATGCTCGGCGAGGCG
CTGGAGGCCGGCCTGCATGTCGACCCGGCGCGCAGCCGCGACCAGTTGCGCGCACGTTCGAAGCAGGGCCCG
GACCCGACCGCGCCGATCCTGCCGGTGATGACCCGGCCCTGGCGCCTGGCCGAGTGGCTGCCGCTGCTGGTC
TGGGACCGCCGCAGCGGCAACCGCGCCTGGCGCTGGTCGCGTGGCCGGCCGCGCTCGCGGCCGCTGGAACCG
GTCGGGCAGGAAACCCGGGTCAAGCTGCACCGTTCGGTGCAGCGGCGGCTGGACGAATGCCCCGACTACCGG
CCGTGCAACCTGCCAGCGCTGGAACGCTGCGACCTCATCGACGATTCGCCGTTGCTTGACGGCTACCGCTAG

Translation:

MDDLSPDSALPPAGSAQDNDAPRQLVVCIDGTSNRFGDQPTNVVRLYRSLSRDPRRVLAYYDQGVGTFGLKE
TLFEWQKFPSRIAGLAFGWGLKRNVEGAYRFLAEHYRPGDQIFLFGFSRGAYAVRVLAAMLRAVGLIDAHQP
HLFDYAWTLLTTRMPPRAEDKRAGTRRRGPDFGLLGRFRKVFGRQVKVHFLGLFDTVTSVGWVYDPLTVPYS
SNNEMVDVVRQALAIDECRCFFRQNLWFGEKDRKSDVLQVWFPGMHSDVGGGYAPKDSRLALVAFTWMLGEA
LEAGLHVDPARSRDQLRARSKQGPDPTAPILPVMTRPWRLAEWLPLLVWDRRSGNRAWRWSRGRPRSRPLEP
VGQETRVKLHRSVQRRLDECPDYRPCNLPALERCDLIDDSPLLDGYR*

AnnotationID:1276 GeneID:1267

AnnotatorUID: diggins

Modification Date/Time: 2005-03-03 06:06:52

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2063

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2537

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19680

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32642

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1267_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1267

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2313 PA2063_tr translation of PA2063 407 99.75 99.75 0 2190.0

74733 gb|AAG05451.1|AE004633_2 (AE004633) hypothetical protein PA2063 [Pseudomonas aeruginosa PAO1] 407 99.75 99.75 0 2190.0

GC ORFID: `44269`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2063`	Glimmer Score:
Start: `1580575`	Stop: `1581798`
Length: `1224`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA2063 translation of PA2063`	Homolog Bit Score `848.0`
Other Homologs: `t_PA2063 (ORF: GLIMMER)`
GC ORF Sequence
ATGGACGATCTCTCCCCCGATTCCGCCTTGCCGCCTGCCGGCAGCGCCCAGGACAACGACGCGCCGCGCCAG TTGGTGGTCTGCATCGACGGAACCTCGAACCGCTTCGGCGACCAGCCGACCAACGTGGTGCGCCTGTACCGC TCGCTGTCGCGCGATCCGCGCAGGGTGCTGGCCTACTACGACCAAGGCGTCGGCACCTTCGGCCTGAAGGAA ACCCTGTTCGAGTGGCAGAAGTTTCCCTCGCGGATCGCCGGCCTGGCCTTCGGCTGGGGGCTCAAGCGCAAC GTCGAGGGCGCCTATCGCTTCCTCGCCGAGCACTACCGGCCCGGCGACCAGATATTCCTCTTCGGCTTTTCC CGTGGCGCCTACGCGGTGCGCGTGCTGGCCGCGATGCTGCGTGCGGTGGGCCTGATCGATGCGCACCAGCCG CACCTCTTCGACTACGCCTGGACCCTGCTCACCACCCGCATGCCGCCCCGCGCCGAAGACAAGCGGGCCGGC ACGCGTCGCCGCGGGCCGGACTTCGGCCTGCTGGGACGCTTCCGCAAGGTCTTCGGCCGGCAGGTGAAGGTG CACTTCCTCGGCCTGTTCGACACCGTGACCTCGGTGGGCTGGGTCTACGACCCGCTGACCGTGCCGTATTCC TCGAACAACGAAATGGTCGACGTGGTCCGCCAGGCCCTGGCCATCGACGAATGCCGCTGCTTCTTCCGGCAG AACCTCTGGTTCGGCGAGAAGGACCGCAAGTCCGACGTGTTGCAGGTGTGGTTCCCCGGCATGCACTCCGAT GTCGGCGGTGGCTATGCGCCGAAGGACTCGCGGCTGGCCCTGGTGGCCTTTACCTGGATGCTCGGCGAGGCG CTGGAGGCCGGCCTGCATGTCGACCCGGCGCGCAGCCGCGACCAGTTGCGCGCACGTTCGAAGCAGGGCCCG GACCCGACCGCGCCGATCCTGCCGGTGATGACCCGGCCCTGGCGCCTGGCCGAGTGGCTGCCGCTGCTGGTC TGGGACCGCCGCAGCGGCAACCGCGCCTGGCGCTGGTCGCGTGGCCGGCCGCGCTCGCGGCCGCTGGAACCG GTCGGGCAGGAAACCCGGGTCAAGCTGCACCGTTCGGTGCAGCGGCGGCTGGACGAATGCCCCGACTACCGG CCGTGCAACCTGCCAGCGCTGGAACGCTGCGACCTCATCGACGATTCGCCGTTGCTTGACGGCTACCGCTAG