ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1266

TrivialName: PA14_02810

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_02810

PAO1 Ortholog Locus: PA0229

Sequence Length: 1299

Protein Length: 432

Start: 248614

Stop: 249912

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03618.1|AE004461_1 (AE004461) dicarboxylic acid transporter PcaT [Pseudomonas aeruginosa PAO1] Identities = 432/432 (100%), Positives = 432/432 (100%)

Sequence:

ATGACTGCCCCGGTTCACCAGTACAGCAACGAAGAACGCCGCAAGCGCATCTTCGCCATCGTCGGCGCCTCC
TCCGGCAACCTCGTGGAATGGTTCGACTTCTACGTCTACGCCTTCTGCGCGATCTACTTCGCACCGGCCTTC
TTCCCCTCCGACAACCCCACGGTGCAGTTGCTGAACACCGCCGGGGTCTTCGCCGCCGGCTTCCTCATGCGC
CCCATCGGCGGCTGGATGTTCGGCCGCATCGCCGACAAGCACGGGCGCAAGACCGCCATGCTGATCTCGGTG
GTGATGATGTGCGCCGGCTCCCTGGCGATCGCCTGCATGCCCACCTACGCCAGCATCGGCACCCTGGCGCCG
GCGCTGCTGTTGCTGGCGCGGATGTTCCAGGGCCTGTCGGTGGGCGGCGAGTACGGCACCAGCGCGACCTAC
ATGAGCGAGGTGGCGCTCAAGGGCCAGCGCGGCTTCTTCGCCTCGTTCCAGTACGTCACCCTGATCGGCGGA
CAGTTGCTGGCGGTGCTGGTGGTGGTGATCCTGCAGCAGTTGCTGAGCGAAGACGAACTGCGCGCCTGGGGC
TGGCGGATTCCCTTCGTGATCGGCGCGATCACCGCGGTGATCGCCCTCTGGCTGCGGCGCTCGCTGAACGAG
ACCGCTTCGAAGTCGACCCTGGAGCGCAAGGAGTCTGGCACCTTCGCCGAGCTGTTCAAGCACAAGCGGGCC
TTCTTCACCGTGCTCGGATTCACCGCCGGCGGCTCGCTGATCTTCTACACCTTCACCACCTACATGCAGAAG
TACCTGGTCAACACCGCCGGGATGAGCGCCAAGACCGCCAGCGCGGTGATGACCTTCGCCCTGCTGGCGTAC
ATGCTGATGCAACCGCTGTTCGGCATGCTTTCCGATCGCATCGGGCGCAAGACCTCGATGCTCTGGTTCGGC
ACCCTGGGCACACTCTGCACCTTGCCGATCCTGCTCGCGCTGAAGACCGTGAGCAGTCCCTACATGGCCTTC
TTCCTGATCATCCTGGCGCTGGCCATCGTCAGCCTGTACACCTCCATCAGCGGCCTGATCAAGGCCGAGATG
TTCCCGCCGGAGGTGCGCGCCCTCGGCGTCGGAGTGTCCTACGCGGTGGGCAACGCGATCTTCGGCGGCTCG
GCCGAGTACGTCGCCCTGGGGCTGAAGTCGGTAGGGATGGAGAACGTCTTCTACTGGTATGTTTCAGCCATG
TGCCTGCTGGCGCTGCTGGTCTGCGTGAGCCTGCCGGATCTGCGCAAGGTCAGCTACCTGAACGACGAGCCC
TGA

Translation:

MTAPVHQYSNEERRKRIFAIVGASSGNLVEWFDFYVYAFCAIYFAPAFFPSDNPTVQLLNTAGVFAAGFLMR
PIGGWMFGRIADKHGRKTAMLISVVMMCAGSLAIACMPTYASIGTLAPALLLLARMFQGLSVGGEYGTSATY
MSEVALKGQRGFFASFQYVTLIGGQLLAVLVVVILQQLLSEDELRAWGWRIPFVIGAITAVIALWLRRSLNE
TASKSTLERKESGTFAELFKHKRAFFTVLGFTAGGSLIFYTFTTYMQKYLVNTAGMSAKTASAVMTFALLAY
MLMQPLFGMLSDRIGRKTSMLWFGTLGTLCTLPILLALKTVSSPYMAFFLIILALAIVSLYTSISGLIKAEM
FPPEVRALGVGVSYAVGNAIFGGSAEYVALGLKSVGMENVFYWYVSAMCLLALLVCVSLPDLRKVSYLNDEP
*

AnnotationID:1275 GeneID:1266

AnnotatorUID: danlee

Modification Date/Time: 2004-02-05 18:06:38

Gene Name: pcaT

Confidence Code: 2

GeneProduct: dicarboxylic acid transporter PcaT

Cell Localization: ()

Synonyms: kgtP

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name: alpha-ketoglutarate permease

Functional Category Confidence Code: 5

COGs: pfam00083

Secondary Functional Category(ies): Transport of small molecules

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2535

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17039

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search (BLASTP).

Reference Type: Blast (text/plain)

Data: PA0229_CDS.cgi

URL:

ReferenceID:19678

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1266

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2311 PA0229_tr translation of PA0229 432 99.99 99.99 0 2193.0

74691 gb|AAG03618.1|AE004461_1 (AE004461) dicarboxylic acid transporter PcaT [Pseudomonas aeruginosa PAO1] 432 99.99 99.99 0 2193.0

74692 gb|AAA90923.1| (U48776) dicarboxylic acid transport protein [Pseudomonas putida] 433 76.67 87.75 5 1705.0

74693 gb|AAD39560.1| (AF031417) PcaT-like protein [Pseudomonas putida] 433 76.67 87.99 5 1704.0

74694 gb|AAN67001.1|AE016328_6 (AE016779) dicarboxylate MFS transporter [Pseudomonas putida KT2440] 433 76.44 87.52 5 1695.0

GC ORFID: `44268`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0229`	Glimmer Score:
Start: `6049955`	Stop: `6051253`
Length: `1299`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0229 translation of PA0229`	Homolog Bit Score `849.0`
Other Homologs: `psyr_15may02_Scaffold5_revised_gene6194 (ORF: BLASTX 644.0), psyr_15may02_Scaffold1_revised_gene289 (ORF: BLASTX 506.0), t_PA5530 (ORF: BLASTX 472.0), t_PA0229 (ORF: GLIMMER)`
GC ORF Sequence
ATGACTGCCCCGGTTCACCAGTACAGCAACGAAGAACGCCGCAAGCGCATCTTCGCCATCGTCGGCGCCTCC TCCGGCAACCTCGTGGAATGGTTCGACTTCTACGTCTACGCCTTCTGCGCGATCTACTTCGCACCGGCCTTC TTCCCCTCCGACAACCCCACGGTGCAGTTGCTGAACACCGCCGGGGTCTTCGCCGCCGGCTTCCTCATGCGC CCCATCGGCGGCTGGATGTTCGGCCGCATCGCCGACAAGCACGGGCGCAAGACCGCCATGCTGATCTCGGTG GTGATGATGTGCGCCGGCTCCCTGGCGATCGCCTGCATGCCCACCTACGCCAGCATCGGCACCCTGGCGCCG GCGCTGCTGTTGCTGGCGCGGATGTTCCAGGGCCTGTCGGTGGGCGGCGAGTACGGCACCAGCGCGACCTAC ATGAGCGAGGTGGCGCTCAAGGGCCAGCGCGGCTTCTTCGCCTCGTTCCAGTACGTCACCCTGATCGGCGGA CAGTTGCTGGCGGTGCTGGTGGTGGTGATCCTGCAGCAGTTGCTGAGCGAAGACGAACTGCGCGCCTGGGGC TGGCGGATTCCCTTCGTGATCGGCGCGATCACCGCGGTGATCGCCCTCTGGCTGCGGCGCTCGCTGAACGAG ACCGCTTCGAAGTCGACCCTGGAGCGCAAGGAGTCTGGCACCTTCGCCGAGCTGTTCAAGCACAAGCGGGCC TTCTTCACCGTGCTCGGATTCACCGCCGGCGGCTCGCTGATCTTCTACACCTTCACCACCTACATGCAGAAG TACCTGGTCAACACCGCCGGGATGAGCGCCAAGACCGCCAGCGCGGTGATGACCTTCGCCCTGCTGGCGTAC ATGCTGATGCAACCGCTGTTCGGCATGCTTTCCGATCGCATCGGGCGCAAGACCTCGATGCTCTGGTTCGGC ACCCTGGGCACACTCTGCACCTTGCCGATCCTGCTCGCGCTGAAGACCGTGAGCAGTCCCTACATGGCCTTC TTCCTGATCATCCTGGCGCTGGCCATCGTCAGCCTGTACACCTCCATCAGCGGCCTGATCAAGGCCGAGATG TTCCCGCCGGAGGTGCGCGCCCTCGGCGTCGGAGTGTCCTACGCGGTGGGCAACGCGATCTTCGGCGGCTCG GCCGAGTACGTCGCCCTGGGGCTGAAGTCGGTAGGGATGGAGAACGTCTTCTACTGGTATGTTTCAGCCATG TGCCTGCTGGCGCTGCTGGTCTGCGTGAGCCTGCCGGATCTGCGCAAGGTCAGCTACCTGAACGACGAGCCC TGA