ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1265

TrivialName: PA14_68330

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_68330

PAO1 Ortholog Locus: PA5171

Sequence Length: 1257

Protein Length: 418

Start: 6094556

Stop: 6095812

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08556.1|AE004930_2 (AE004930) arginine deiminase [Pseudomonas aeruginosa PAO1] Identities = 417/418 (99%), Positives = 418/418 (100%)

Sequence:

ATGAGCACGGAAAAAACCAAACTTGGCGTCCACTCCGAAGCCGGCAAACTGCGCAAAGTGATGGTCTGCTCG
CCCGGACTCGCCCACCAGCGCCTGACCCCTAGCAACTGCGACGAGTTGCTGTTCGACGACGTGATCTGGGTG
AACCAGGCCAAGCGCGACCACTTCGACTTCGTCACCAAGATGCGCGAGCGCGGCATCGACGTCCTCGAGATG
CACAACCTGCTGACCGAGACCATCCAGAACCCGGAAGCGCTGAAGTGGATCCTCGATCGCAAGATCACCGCC
GACAGCGTCGGCCTGGGCCTGACCAGCGAGCTGCGCTCCTGGCTGGAGAGCCTGGAGCCGCGCAAGCTGGCC
GAGTACCTGATCGGCGGCGTCGCCGCTGACGACCTGCCCGCCAGCGAAGGCGCCAACATCCTCAAGATGTAC
CGCGAGTACCTGGGCCATTCCAGCTTCCTGCTGCCGCCGTTGCCGAACACCCAGTTCACCCGCGACACCACT
TGCTGGATCTACGGCGGCGTGACCCTGAACCCGATGTACTGGCCGGCGCGACGACAGGAAACCCTGCTGACC
ACCGCCATCTACAAGTTCCACCCCGAGTTCGCCAACGCCGAATTCGAGATCTGGTACGGCGACCCGGACAAG
GACCACGGCTCCTCGACCCTGGAAGGCGGCGACGTGATGCCAATCGGTAACGGCGTGGTCCTGATCGGCATG
GGCGAGCGCTCCTCGCGCCAGGCCATCGGTCAGGTCGCCCAGTCGCTGTTCGCCAAGGGCGCCGCCGAGCGG
GTGATCGTCGCCGGCCTGCCGAAGTCCCGCGCCGCGATGCACCTGGACACCGTGTTCAGCTTCTGCGACCGC
GACCTGGTCACGGTCTTCCCGGAAGTGGTCAAGGAAATCGTGCCCTTCAGCCTGCGCCCCGATCCGAGCAGC
CCCTACGGCATGAACATCCGTCGCGAGGAGAAAACCTTCCTCGAAGTGGTCGCCGAATCCCTCGGCCTGAAG
AAACTGCGCGTGGTCGAGACCGGCGGCAACAGCTTCGCCGCCGAGCGCGAGCAATGGGACGACGGTAACAAC
GTGGTCTGCCTGGAGCCGGGCGTGGTAGTCGGCTACGACCGCAACACCTACACCAACACCCTGCTGCGCAAG
GCCGGCGTCGAGGTCATCACCATCAGCGCCAGCGAACTGGGTCGCGGTCGCGGCGGCGGCCACTGCATGACC
TGCCCGATCATCCGCGACCCGATCGACTACTGA

Translation:

MSTEKTKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEM
HNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMY
REYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDK
DHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDR
DLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNN
VVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIIRDPIDY*

AnnotationID:1274 GeneID:1265

AnnotatorUID: danlee

Modification Date/Time: 2004-02-03 18:06:11

Gene Name: arcA

Confidence Code: 1

GeneProduct: arginine deiminase

Cell Localization: (1) Cytoplasmic

Synonyms:

Cell Localization Confidence Code: 1

MolecularFunction:

Functional Category: (2) Amino acid biosynthesis and metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2235

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

 Arginine and proline metabolism

Homology:

Structural Features:

Genomic Context:

3-gene arginine deiminase cluster arcCBA, 
followed by arginine/ornithine antiporter arcD

Comment:

ReferenceID:2533

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:16995

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI Conserved Domain Search.

Reference Type: Blast (text/plain)

Data: PA5171_CDS.cgi

URL:

ReferenceID:19676

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1265

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2310 PA5171_tr translation of PA5171 418 99.76 99.99 0 2194.0

74669 gb|AAG08556.1|AE004930_2 (AE004930) arginine deiminase [Pseudomonas aeruginosa PAO1] 418 99.76 99.99 0 2194.0

74670 emb|CAA32824.1| (X14694) unnamed protein product [Pseudomonas aeruginosa] 418 99.76 99.99 0 2194.0

74671 gb|AAN66626.1|AE016290_4 (AE016777) arginine deiminase [Pseudomonas putida KT2440] 418 84.44 93.54 1 1931.0

74672 gb|AAA16964.1| (U07185) arginine deiminase [Pseudomonas putida] 420 84.04 92.38 2 1918.0

GC ORFID: `44267`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5171`	Glimmer Score:
Start: `5358242`	Stop: `5359498`
Length: `1257`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5171 translation of PA5171`	Homolog Bit Score `849.0`
Other Homologs: `psyr_15may02_Scaffold6_revised_gene6691 (ORF: BLASTX 707.0), t_PA5171 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCACGGAAAAAACCAAACTTGGCGTCCACTCCGAAGCCGGCAAACTGCGCAAAGTGATGGTCTGCTCG CCCGGACTCGCCCACCAGCGCCTGACCCCTAGCAACTGCGACGAGTTGCTGTTCGACGACGTGATCTGGGTG AACCAGGCCAAGCGCGACCACTTCGACTTCGTCACCAAGATGCGCGAGCGCGGCATCGACGTCCTCGAGATG CACAACCTGCTGACCGAGACCATCCAGAACCCGGAAGCGCTGAAGTGGATCCTCGATCGCAAGATCACCGCC GACAGCGTCGGCCTGGGCCTGACCAGCGAGCTGCGCTCCTGGCTGGAGAGCCTGGAGCCGCGCAAGCTGGCC GAGTACCTGATCGGCGGCGTCGCCGCTGACGACCTGCCCGCCAGCGAAGGCGCCAACATCCTCAAGATGTAC CGCGAGTACCTGGGCCATTCCAGCTTCCTGCTGCCGCCGTTGCCGAACACCCAGTTCACCCGCGACACCACT TGCTGGATCTACGGCGGCGTGACCCTGAACCCGATGTACTGGCCGGCGCGACGACAGGAAACCCTGCTGACC ACCGCCATCTACAAGTTCCACCCCGAGTTCGCCAACGCCGAATTCGAGATCTGGTACGGCGACCCGGACAAG GACCACGGCTCCTCGACCCTGGAAGGCGGCGACGTGATGCCAATCGGTAACGGCGTGGTCCTGATCGGCATG GGCGAGCGCTCCTCGCGCCAGGCCATCGGTCAGGTCGCCCAGTCGCTGTTCGCCAAGGGCGCCGCCGAGCGG GTGATCGTCGCCGGCCTGCCGAAGTCCCGCGCCGCGATGCACCTGGACACCGTGTTCAGCTTCTGCGACCGC GACCTGGTCACGGTCTTCCCGGAAGTGGTCAAGGAAATCGTGCCCTTCAGCCTGCGCCCCGATCCGAGCAGC CCCTACGGCATGAACATCCGTCGCGAGGAGAAAACCTTCCTCGAAGTGGTCGCCGAATCCCTCGGCCTGAAG AAACTGCGCGTGGTCGAGACCGGCGGCAACAGCTTCGCCGCCGAGCGCGAGCAATGGGACGACGGTAACAAC GTGGTCTGCCTGGAGCCGGGCGTGGTAGTCGGCTACGACCGCAACACCTACACCAACACCCTGCTGCGCAAG GCCGGCGTCGAGGTCATCACCATCAGCGCCAGCGAACTGGGTCGCGGTCGCGGCGGCGGCCACTGCATGACC TGCCCGATCATCCGCGACCCGATCGACTACTGA