ViewGene
Locus Name:
GeneID:
Location:

GeneID:1263
TrivialName: PA14_15930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15930
PAO1 Ortholog Locus:PA3748
Sequence Length:1293
Protein Length:430
Start: 1358348
Stop: 1357056
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07135.1|AE004793_12 (AE004793) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 430/430 (100%), Positives = 430/430 (100%)
Sequence:
ATGGATGAGCTGCACCCCGGGTACCTGGTCGGCCTGCTGGTTCTCCTGGTCGCCTGCTCGGCGTTCTTCTCC
TGCGTCGAGACCGCCCTGCTCAACCTCGACCGTTACCGCCTGCGCCTACAGGCCAAGCAAGGCCTGCGCGGG
GCCCGGCGCAGCAGTTGGCTGCTGCTGCACGACGACCGCCTGCGCGGCACCCTGTTGTTCGGCCGCACCCTG
GTCAACGTCAGCGCCGCCGCCCTGGCCAGTTGGGCCGCGCTGCGCCACTGGGGCGTCATCGGCCTGGCCGTC
GCCATCCCCGGCATGACCCTGCTCCTGCTGCTGTTCGGCGCCCTGCTGCCGCGCCGCTACGGCGCCCTTCGC
TCGGAACGCGTCGCCCTGCCGCTCAGCCTGCCGCTCCTGATCCTGCAGCGCCTGTGCTGGCCCCTGCTGTGG
CTGCTGACCCTGCTAAGCAACGCGCTGCTGCGCCTGCTCGGCGTCGCCGCGGCGGAACAGGACGACAGCGGA
CGCAGCCGCGACGAAGAGGCCCTGCATCCGGCCGACAACCCCCAGGCCAGCGAGGTCAACCGGCATGACATG
CTGCTCGGCCTGCTGGACCTGGAGAAGGTCACGGTCAACGACCTGATGATCCCGCGCAACGAAATCGAAGGC
ATCGACCTCGACGACGAACTCGAGGTCATCGTCGAGCAACTGCGCACCACCAGCCACACCCGCCTGCCGGTC
TACCGCGACGACGTCAACCAGATCGAAGGGGTCGTGCACATGCGCCAGATCGCGCGCCTGCTGACCCAGGGC
CGCCTGACCAAGGAGAATCTCCGCCAGGCCTGCATGGAGCCGTATTTCGTGCCGGAAAGCACGCCGCTGTCG
ACCCAGCTGGTGAACTTCCAGAAGGAGAAGCGCCGTATCGGCGTGGTGGTCGACGAATATGGCGAGGTGATC
GGCATCGTCACGCTGGAGGACATCCTCGAAGAGATCGTCGGCGACTTCAACGACCTCGACAGCCTCGACAAC
CCGGATATCCAGGCCCAGGAAGACGGCAGCTTCGTCATCGACGGCAGCGCCAACCTGCGCGAGCTGAACAAG
TCGCTTGGCTGGCAATTGCCCTGCGACGGCCCGAAGACTCTCAACGGCCTGGTCACCGAAGCCCTGGAGCAG
ATCCCCGATTGCGCGGTGTGCCTGCGCATCGGCCCCTACTGCCTGGAAATCCAGCAGTCGGCGGAAAACCGT
GTGAAAAGCGTGCGCGCCTGGCATCCCCGCGCGCTGACCCCGCTGGTCGAAAGCGACGCCAGCGTCTGA
Translation:
MDELHPGYLVGLLVLLVACSAFFSCVETALLNLDRYRLRLQAKQGLRGARRSSWLLLHDDRLRGTLLFGRTL
VNVSAAALASWAALRHWGVIGLAVAIPGMTLLLLLFGALLPRRYGALRSERVALPLSLPLLILQRLCWPLLW
LLTLLSNALLRLLGVAAAEQDDSGRSRDEEALHPADNPQASEVNRHDMLLGLLDLEKVTVNDLMIPRNEIEG
IDLDDELEVIVEQLRTTSHTRLPVYRDDVNQIEGVVHMRQIARLLTQGRLTKENLRQACMEPYFVPESTPLS
TQLVNFQKEKRRIGVVVDEYGEVIGIVTLEDILEEIVGDFNDLDSLDNPDIQAQEDGSFVIDGSANLRELNK
SLGWQLPCDGPKTLNGLVTEALEQIPDCAVCLRIGPYCLEIQQSAENRVKSVRAWHPRALTPLVESDASV*
AnnotationID:1272GeneID:1263
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 06:06:11
Gene Name:
Confidence Code:3
GeneProduct:putative hemolysin containing a CBS domain
Cell Localization:()
Synonyms:yfjD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4536,COG1253
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO10030.1|AE016802_73 (AE016802) Putative Mg2+ and Co2+ transporter CorB [Vibrio
           vulnificus CMCP6]
          Length = 425

 Score =  352 bits (903), Expect = 3e-96
 Identities = 188/422 (44%), Positives = 281/422 (66%), Gaps = 6/422 (1%)

>dbj|BAC60799.1| (AP005081) putative hemolysin [Vibrio parahaemolyticus]
          Length = 426

 Score =  344 bits (883), Expect = 5e-94
 Identities = 181/419 (43%), Positives = 275/419 (65%), Gaps = 6/419 (1%)

>emb|CAC92530.1| (AJ414156) putative membrane protein [Yersinia pestis CO92]
          Length = 427

 Score =  335 bits (858), Expect = 4e-91
 Identities = 175/431 (40%), Positives = 275/431 (63%), Gaps = 9/431 (2%)






 
Structural Features:
COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB 
[Inorganic ion transport and metabolism]
CD-Length = 423 residues, 100.0% aligned
Score =  542 bits (1397), Expect = 8e-155
Identities = 212/425 (49%), Positives = 284/425 (66%), Gaps = 7/425 (1%)

COG1253, TlyC, Hemolysins and related proteins containing CBS domains 
CD-Length = 429 residues,  95.6% aligned
Score =  269 bits (688), Expect = 1e-72
Identities = 143/411 (34%), Positives = 226/411 (54%), Gaps = 10/411 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2529




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19672




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31810




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1263_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1263
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2308
                           PA3748_tr
                           translation of PA3748
                           430
                           99.99
                           99.99
                           0
                           2193.0
     

     
     
74587
                           gb|AAG07135.1|AE004793_12
                           (AE004793) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           430
                           99.99
                           99.99
                           0
                           2193.0
     

     
     
74604
                           gb|AAN67081.1|AE016337_4
                           (AE016779) CBS domain protein [Pseudomonas putida KT2440]
                           458
                           44.54
                           56.76
                           85
                           841.0
     

     
     
74589
                           gb|AAF93726.1|
                           (AE004141) hemolysin, putative [Vibrio cholerae O1 biovar eltor str. N16961]
                           434
                           43.77
                           64.51
                           12
                           895.0
     

     
     
74588
                           gb|AAO10030.1|AE016802_73
                           (AE016802) Putative Mg2+ and Co2+ transporter CorB [Vibrio vulnificus CMCP6]
                           437
                           43.70
                           64.75
                           19
                           910.0
     

     






      

          
GC ORFID: 44265How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3748Glimmer Score: 

          
Start: 3595589Stop: 3596881

          
Length: 1293


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3748 translation of PA3748Homolog Bit Score 849.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4836 (ORF: BLASTX 344.0), t_PA3748 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGAGCTGCACCCCGGGTACCTGGTCGGCCTGCTGGTTCTCCTGGTCGCCTGCTCGGCGTTCTTCTCC 
TGCGTCGAGACCGCCCTGCTCAACCTCGACCGTTACCGCCTGCGCCTACAGGCCAAGCAAGGCCTGCGCGGG 
GCCCGGCGCAGCAGTTGGCTGCTGCTGCACGACGACCGCCTGCGCGGCACCCTGTTGTTCGGCCGCACCCTG 
GTCAACGTCAGCGCCGCCGCCCTGGCCAGTTGGGCCGCGCTGCGCCACTGGGGCGTCATCGGCCTGGCCGTC 
GCCATCCCCGGCATGACCCTGCTCCTGCTGCTGTTCGGCGCCCTGCTGCCGCGCCGCTACGGCGCCCTTCGC 
TCGGAACGCGTCGCCCTGCCGCTCAGCCTGCCGCTCCTGATCCTGCAGCGCCTGTGCTGGCCCCTGCTGTGG 
CTGCTGACCCTGCTAAGCAACGCGCTGCTGCGCCTGCTCGGCGTCGCCGCGGCGGAACAGGACGACAGCGGA 
CGCAGCCGCGACGAAGAGGCCCTGCATCCGGCCGACAACCCCCAGGCCAGCGAGGTCAACCGGCATGACATG 
CTGCTCGGCCTGCTGGACCTGGAGAAGGTCACGGTCAACGACCTGATGATCCCGCGCAACGAAATCGAAGGC 
ATCGACCTCGACGACGAACTCGAGGTCATCGTCGAGCAACTGCGCACCACCAGCCACACCCGCCTGCCGGTC 
TACCGCGACGACGTCAACCAGATCGAAGGGGTCGTGCACATGCGCCAGATCGCGCGCCTGCTGACCCAGGGC 
CGCCTGACCAAGGAGAATCTCCGCCAGGCCTGCATGGAGCCGTATTTCGTGCCGGAAAGCACGCCGCTGTCG 
ACCCAGCTGGTGAACTTCCAGAAGGAGAAGCGCCGTATCGGCGTGGTGGTCGACGAATATGGCGAGGTGATC 
GGCATCGTCACGCTGGAGGACATCCTCGAAGAGATCGTCGGCGACTTCAACGACCTCGACAGCCTCGACAAC 
CCGGATATCCAGGCCCAGGAAGACGGCAGCTTCGTCATCGACGGCAGCGCCAACCTGCGCGAGCTGAACAAG 
TCGCTTGGCTGGCAATTGCCCTGCGACGGCCCGAAGACTCTCAACGGCCTGGTCACCGAAGCCCTGGAGCAG 
ATCCCCGATTGCGCGGTGTGCCTGCGCATCGGCCCCTACTGCCTGGAAATCCAGCAGTCGGCGGAAAACCGT 
GTGAAAAGCGTGCGCGCCTGGCATCCCCGCGCGCTGACCCCGCTGGTCGAAAGCGACGCCAGCGTCTGA