ViewGene

Locus Name:
GeneID:
Location:

GeneID:1262
TrivialName: PA14_45700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45700
PAO1 Ortholog Locus:PA1451
Sequence Length:1362
Protein Length:453
Start: 4065393
Stop: 4064032
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04840.1|AE004574_11 (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 442/453 (97%), Positives = 444/453 (98%), Gaps = 6/453 (1%)
Sequence:
ATGTCTGCAATCACGCGTTATCTCGCCATGCTTCGGCTGTTCGGCATGCTGCTCTGCGCCGCCGCGATTCCC
TCCGTTGCCACCGCGACGGTGCCGGTCACCGTCGCGGTGGCAGCGTCCGATGTCGAGGAGGAGGCCGTGGAG
GCATCGGCGGTCGGCGCCGAGGCCGAGGCAGCGCGCGATGCGGGCTACGAGTCCGCGGAGGTTCCGGCGCCG
GCGCGGCGGGTGACCGACCTTACCGCGACCCTCGACGCCGCCGAGCGTGCCCGCCTGGAAGCTTCGCTGGCC
GCGCTGGAGGCCCGGAAGGGTGCCCAGGTAGCGATCCTGATGGTGCCCAGCACCTATCCGGACAGCATCGAG
GCCTATGCGACGCGGGTCTTCGAGGCGTGGAAGCTGGGGCGCAAGGGGATCGATGACGGCGTCCTGGTGCTG
GTGGCGAAGGACGACCGGCGCATGCGCATCGAAGTCGGCTATGGCCTGGAAGGAACGATCACCGACATCGAT
GCCGGGCGGATCATCCGCGAATACATGACCCCTGCGTTCCGTCAGCAAGACTACGCCGGCGGCCTGGAAGCG
GCGGCGCAGCGCCTGGTACGACTGATCGACGGCGAGGCGTTGCCGCCGCCGCCGCGCGACCCGGTGGAGCCC
GGCGCGGTACGGCAGACCCTGGCTATCGCATTCCTGCTCGGCGCTCTCGGCGGGGTGGCGCTGCTGGTACGC
CCGCGCGCCTGGTACTGGACCCTGGGTGCGGTAGTGGCGCTCGCTGCGGCGCTGGCGCTGGGGCGACACTGG
CCAGCATGGGCGATGGTGGCGCTGGCGGAGATGGTGGCGGTCCTGGGCGTCGGCTTCGGCGCGTTGCTCAAG
TATTCGCGCGGTGCCCGCTGGTTCTTCGCCATTCTTGTGCTCTATGCGCTGGGGCTGTTCTGGGCCTACGGC
CGTTATGGCCTGCCGGTGCTCCATTACGGATTGGCCGTGCCGCTTTCGCTGGGGCTGACCCTGCTGATGCTG
GCCGGTGCCTGGCAGGGGCTGCGCAGAGGACGGCGCTGGGCCTACCTGCCGGGCCTGCTCGGCCTGCTGCTG
ACCCTGGCCCTGGAGTGCCTGCTGTTGCTGGTGGACGACCCGCTGAACAGCATCGAGGCGTTGATCATCCTG
CCCGCCGCTTGCCTGCCGCTGCTCATCGGTTGCAATTTCAGCGCCGGCGGCTCGGGGGGAGGGCGTCGGCGC
GGCGGCGATTACGCTAGCTCATCGGGTTCCTCGTCGTCGAGTTCGTCCAGTTCGTCCAGTTCGTCCAGTTCG
TCTTCGGACTCGTTCTCCGGCGGCGGAGGCTCGAGTGGCGGCGGTGGCGCCTCCGGTAGTTGGTGA
Translation:
MSAITRYLAMLRLFGMLLCAAAIPSVATATVPVTVAVAASDVEEEAVEASAVGAEAEAARDAGYESAEVPAP
ARRVTDLTATLDAAERARLEASLAALEARKGAQVAILMVPSTYPDSIEAYATRVFEAWKLGRKGIDDGVLVL
VAKDDRRMRIEVGYGLEGTITDIDAGRIIREYMTPAFRQQDYAGGLEAAAQRLVRLIDGEALPPPPRDPVEP
GAVRQTLAIAFLLGALGGVALLVRPRAWYWTLGAVVALAAALALGRHWPAWAMVALAEMVAVLGVGFGALLK
YSRGARWFFAILVLYALGLFWAYGRYGLPVLHYGLAVPLSLGLTLLMLAGAWQGLRRGRRWAYLPGLLGLLL
TLALECLLLLVDDPLNSIEALIILPAACLPLLIGCNFSAGGSGGGRRRGGDYASSSGSSSSSSSSSSSSSSS
SSDSFSGGGGSSGGGGASGSW*
AnnotationID:1271GeneID:1262
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 10:10:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1451
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE40547.1| (BX640411) putative membrane protein [Bordetella pertussis]
          Length = 300

 Score =  176 bits (447), Expect = 2e-43
 Identities = 97/175 (55%), Positives = 118/175 (67%), Gaps = 7/175 (4%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:2527
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19670
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37381
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1262_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1262

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2306 PA1451_tr translation of PA1451 453 97.57 98.01 6 2198.0
74566 gb|AAG04840.1|AE004574_11 (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 453 97.57 98.01 6 2198.0
2307 PA1450_tr translation of PA1450 496 38.70 47.98 120 690.0
74567 gb|AAG04839.1|AE004574_10 (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 496 38.70 47.98 120 690.0
74573 emb|CAE27015.1| (BX572598) DUF477 [Rhodopseudomonas palustris CGA009] 459 32.89 43.79 158 538.0
GC ORFID: 44264How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1451Glimmer Score:
Start: 888516Stop: 889877
Length: 1362
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1451 translation of PA1451Homolog Bit Score 849.0
Other Homologs: t_PA1450 (ORF: BLASTX 254.0), t_PA1451 (ORF: GLIMMER)
GC ORF Sequence
ATGTCTGCAATCACGCGTTATCTCGCCATGCTTCGGCTGTTCGGCATGCTGCTCTGCGCCGCCGCGATTCCC
TCCGTTGCCACCGCGACGGTGCCGGTCACCGTCGCGGTGGCAGCGTCCGATGTCGAGGAGGAGGCCGTGGAG
GCATCGGCGGTCGGCGCCGAGGCCGAGGCAGCGCGCGATGCGGGCTACGAGTCCGCGGAGGTTCCGGCGCCG
GCGCGGCGGGTGACCGACCTTACCGCGACCCTCGACGCCGCCGAGCGTGCCCGCCTGGAAGCTTCGCTGGCC
GCGCTGGAGGCCCGGAAGGGTGCCCAGGTAGCGATCCTGATGGTGCCCAGCACCTATCCGGACAGCATCGAG
GCCTATGCGACGCGGGTCTTCGAGGCGTGGAAGCTGGGGCGCAAGGGGATCGATGACGGCGTCCTGGTGCTG
GTGGCGAAGGACGACCGGCGCATGCGCATCGAAGTCGGCTATGGCCTGGAAGGAACGATCACCGACATCGAT
GCCGGGCGGATCATCCGCGAATACATGACCCCTGCGTTCCGTCAGCAAGACTACGCCGGCGGCCTGGAAGCG
GCGGCGCAGCGCCTGGTACGACTGATCGACGGCGAGGCGTTGCCGCCGCCGCCGCGCGACCCGGTGGAGCCC
GGCGCGGTACGGCAGACCCTGGCTATCGCATTCCTGCTCGGCGCTCTCGGCGGGGTGGCGCTGCTGGTACGC
CCGCGCGCCTGGTACTGGACCCTGGGTGCGGTAGTGGCGCTCGCTGCGGCGCTGGCGCTGGGGCGACACTGG
CCAGCATGGGCGATGGTGGCGCTGGCGGAGATGGTGGCGGTCCTGGGCGTCGGCTTCGGCGCGTTGCTCAAG
TATTCGCGCGGTGCCCGCTGGTTCTTCGCCATTCTTGTGCTCTATGCGCTGGGGCTGTTCTGGGCCTACGGC
CGTTATGGCCTGCCGGTGCTCCATTACGGATTGGCCGTGCCGCTTTCGCTGGGGCTGACCCTGCTGATGCTG
GCCGGTGCCTGGCAGGGGCTGCGCAGAGGACGGCGCTGGGCCTACCTGCCGGGCCTGCTCGGCCTGCTGCTG
ACCCTGGCCCTGGAGTGCCTGCTGTTGCTGGTGGACGACCCGCTGAACAGCATCGAGGCGTTGATCATCCTG
CCCGCCGCTTGCCTGCCGCTGCTCATCGGTTGCAATTTCAGCGCCGGCGGCTCGGGGGGAGGGCGTCGGCGC
GGCGGCGATTACGCTAGCTCATCGGGTTCCTCGTCGTCGAGTTCGTCCAGTTCGTCCAGTTCGTCCAGTTCG
TCTTCGGACTCGTTCTCCGGCGGCGGAGGCTCGAGTGGCGGCGGTGGCGCCTCCGGTAGTTGGTGA