ViewGene
Locus Name:
GeneID:
Location:

GeneID:1261
TrivialName: PA14_10440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10440
PAO1 Ortholog Locus:PA4137
Sequence Length:1257
Protein Length:418
Start: 901194
Stop: 899938
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07524.1|AE004830_5 (AE004830) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 417/418 (99%), Positives = 417/418 (99%)
Sequence:
ATGATCACGGCATGCCCCCGCCCGTGCGCCTGGCGCTGCTATGCGCTTGGCCTCGGCCTCCTGCCCCTCGCC
GCGCAAGCGGAATTCCTCGCGGACAGCAGCGCCCACCTCGACCTCCGCAACTTCTACCAGTTGCGCGACTAC
CGCCAGCACGATGCGCCCCAATCGCAGGCCGGCAACTGGTCGCAGGGCTTCGTCCTGCGCCTGCAATCCGGT
TTCACCGGCGGCCCGCTCGGCTTCGGCCTGGATGCTACCGGGCTGCTCGGCGTCAAGCTCGACTCGGGACGC
GGGCGTAGCAACGATGGCACGCTGCCGTTCGGAGCGAATTCGAAGGAGCCGGTGGACGACTACAGTCACCTC
GGCCTGACCGCCAAGCTGCGCTATTCGCAGACCCAGCTACAGGTCGGCATCCTCATGCCGCAACTGCCGGTG
GCGTTCCGCGACGACGTGCGCCTGTTGCCGCAGACcttcGACGGCGCGCTGCTGACCTCCAGCGAGATCGAG
GGTCTCACCCTCACCGCGGGGCAATTGTGGAAGTCGCGCACTCGCGAGTCGGCCGGCAGCGACGACATGTAC
ATCATGGGCCGCGACAAGGCCCACGCCAGCGACGAGTTCAATCTCGCCGGCGCGACCTACGCCTTCACCCCT
CGGCTCAGCGCCAGCTATTACTACGGCCAGCTCAAGGACATCTACCGGCAGCACTATCTCGGCCTGCTGCAC
ACCCTGCCGCTGGGCGAAGGGCTGTCGCTGCGCAGCGACCTGCGCTACTTCGACAGCGGCGAAGACGGCGCG
GCGATCTCCGGGCCGGTGGACAATCGCAACCTCAACGCCATGCTCACCCTGCGCGCCGGCGCCCACGCCTTC
GGCATCGGTGTCCAGAAGATGATCGGCAACGACGCCTTTCCGGTGCTCAACGGCTACACCACGCCCTACGTG
GCCAACCTCATGGCCTACCAGACCTTCACCCGACCGCAGGAGAAATCCTGGCAACTGCGCTACGACTACGAC
TTCGCCGGCCTCGGCCTGCCCGGCCTGAACCTCATGACCCGCTATGTACAGGGCCGCGACATCGACCGCGGC
GCCGGCCGTGCCGACGACAGCGAATGGGAGCGCAACACCGACCTGTCCTACGTGATCCAGAGCGGACCGCTG
AAGAGCGTCGCCTTGAAATGGCGCAACATCACCTACCGCAGCCGCTACGGTGCGGACCTGGACGAGAACCGC
TTCATCGTCAATTACACGCTAAAGCTCTGGTGA
Translation:
MITACPRPCAWRCYALGLGLLPLAAQAEFLADSSAHLDLRNFYQLRDYRQHDAPQSQAGNWSQGFVLRLQSG
FTGGPLGFGLDATGLLGVKLDSGRGRSNDGTLPFGANSKEPVDDYSHLGLTAKLRYSQTQLQVGILMPQLPV
AFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRESAGSDDMYIMGRDKAHASDEFNLAGATYAFTP
RLSASYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAAISGPVDNRNLNAMLTLRAGAHAF
GIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRG
AGRADDSEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGADLDENRFIVNYTLKLW*
AnnotationID:1270GeneID:1261
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 14:02:33
Gene Name:
Confidence Code:3
GeneProduct:putative porin
Cell Localization:()
Synonyms:opdL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative phenylacetic acid-specific porin
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68878.1|AE016519_11 (AE016786) phenylacetic acid-specific porin [Pseudomonas putida
           KT2440]
          Length = 417

 Score =  429 bits (1102), Expect = e-119
 Identities = 217/400 (54%), Positives = 278/400 (69%), Gaps = 8/400 (2%)

>dbj|BAC41528.1| (AB088420) PhaK-like protein [Pseudomonas resinovorans]
          Length = 418

 Score =  410 bits (1055), Expect = e-114
 Identities = 208/401 (51%), Positives = 270/401 (67%), Gaps = 4/401 (0%)

>gb|AAO55855.1| (AE016864) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 418

 Score =  323 bits (829), Expect = 9e-88
 Identities = 176/397 (44%), Positives = 241/397 (60%), Gaps = 6/397 (1%)






 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  92.9% aligned
Score =  280 bits (717), Expect = 2e-76
Identities = 151/420 (35%), Positives = 204/420 (48%), Gaps = 48/420 (11%)






   
Genomic Context:






   
Comment:
other possible gene names: paaM, phaK,


















    ReferenceID:2525




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19668




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36863




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1261_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1261
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2295
                           PA4137_tr
                           translation of PA4137
                           418
                           99.76
                           99.76
                           0
                           2195.0
     

     
     
74529
                           gb|AAG07524.1|AE004830_5
                           (AE004830) probable porin [Pseudomonas aeruginosa PAO1]
                           418
                           99.76
                           99.76
                           0
                           2195.0
     

     
     
74530
                           emb|CAE45117.1|
                           (AJ579894) putative porin [Pseudomonas sp. Y2]
                           425
                           54.58
                           67.29
                           24
                           1135.0
     

     
     
74531
                           gb|AAC24339.1|
                           (AF029714) PaaM [Pseudomonas putida]
                           434
                           51.61
                           65.43
                           33
                           1123.0
     

     
     
74532
                           gb|AAN68878.1|AE016519_11
                           (AE016786) phenylacetic acid-specific porin [Pseudomonas putida KT2440]
                           436
                           51.14
                           65.36
                           37
                           1110.0
     

     






      

          
GC ORFID: 44263How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4137Glimmer Score: 

          
Start: 4052743Stop: 4053999

          
Length: 1257


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4137 translation of PA4137Homolog Bit Score 850.0

          
Other Homologs:  t_PA0755 (ORF: BLASTX 414.0), t_PA3038 (ORF: BLASTX 410.0), t_PA1025 (ORF: BLASTX 404.0), t_PA2113 (ORF: BLASTX 375.0), t_PA3588 (ORF: BLASTX 328.0), t_PA2213 (ORF: BLASTX 326.0), psyr_15may02_Scaffold1_revised_gene342 (ORF: BLASTX 326.0), psyr_15may02_Scaffold3_revised_gene5124 (ORF: BLASTX 311.0), t_PA0240 (ORF: BLASTX 304.0), t_PA4179 (ORF: BLASTX 300.0), t_PA0291 (ORF: BLASTX 298.0), t_PA4898 (ORF: BLASTX 292.0), psyr_15may02_Scaffold1_revised_gene1320 (ORF: BLASTX 292.0), t_PA4137 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCACGGCATGCCCCCGCCCGTGCGCCTGGCGCTGCTATGCGCTTGGCCTCGGCCTCCTGCCCCTCGCC 
GCGCAAGCGGAATTCCTCGCGGACAGCAGCGCCCACCTCGACCTCCGCAACTTCTACCAGTTGCGCGACTAC 
CGCCAGCACGATGCGCCCCAATCGCAGGCCGGCAACTGGTCGCAGGGCTTCGTCCTGCGCCTGCAATCCGGT 
TTCACCGGCGGCCCGCTCGGCTTCGGCCTGGATGCTACCGGGCTGCTCGGCGTCAAGCTCGACTCGGGACGC 
GGGCGTAGCAACGATGGCACGCTGCCGTTCGGAGCGAATTCGAAGGAGCCGGTGGACGACTACAGTCACCTC 
GGCCTGACCGCCAAGCTGCGCTATTCGCAGACCCAGCTACAGGTCGGCATCCTCATGCCGCAACTGCCGGTG 
GCGTTCCGCGACGACGTGCGCCTGTTGCCGCAGACcttcGACGGCGCGCTGCTGACCTCCAGCGAGATCGAG 
GGTCTCACCCTCACCGCGGGGCAATTGTGGAAGTCGCGCACTCGCGAGTCGGCCGGCAGCGACGACATGTAC 
ATCATGGGCCGCGACAAGGCCCACGCCAGCGACGAGTTCAATCTCGCCGGCGCGACCTACGCCTTCACCCCT 
CGGCTCAGCGCCAGCTATTACTACGGCCAGCTCAAGGACATCTACCGGCAGCACTATCTCGGCCTGCTGCAC 
ACCCTGCCGCTGGGCGAAGGGCTGTCGCTGCGCAGCGACCTGCGCTACTTCGACAGCGGCGAAGACGGCGCG 
GCGATCTCCGGGCCGGTGGACAATCGCAACCTCAACGCCATGCTCACCCTGCGCGCCGGCGCCCACGCCTTC 
GGCATCGGTGTCCAGAAGATGATCGGCAACGACGCCTTTCCGGTGCTCAACGGCTACACCACGCCCTACGTG 
GCCAACCTCATGGCCTACCAGACCTTCACCCGACCGCAGGAGAAATCCTGGCAACTGCGCTACGACTACGAC 
TTCGCCGGCCTCGGCCTGCCCGGCCTGAACCTCATGACCCGCTATGTACAGGGCCGCGACATCGACCGCGGC 
GCCGGCCGTGCCGACGACAGCGAATGGGAGCGCAACACCGACCTGTCCTACGTGATCCAGAGCGGACCGCTG 
AAGAGCGTCGCCTTGAAATGGCGCAACATCACCTACCGCAGCCGCTACGGTGCGGACCTGGACGAGAACCGC 
TTCATCGTCAATTACACGCTAAAGCTCTGGTGA