ViewGene
Locus Name:
GeneID:
Location:

GeneID:1260
TrivialName: PA14_15920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15920
PAO1 Ortholog Locus:PA3749
Sequence Length:1314
Protein Length:437
Start: 1356752
Stop: 1355439
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07136.1|AE004794_1 (AE004794) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 435/437 (99%), Positives = 436/437 (99%)
Sequence:
ATGACCGCCGCCACCCTCGCCGCCGACGCCGCTCCGGAACCGGCCAACTCGACCACCCGGGTCGCAGTCGCC
AGCTTCATCGGCACCGCCATCGAATTCTACGATTTCTACGTCTATGCCACTGCCGCCGCCCTGGTGATCGGT
CCGGTATTCTtcccGCAGACATCCGGCACCGCGCAGATGCTCAGCGCCTTCCTCaccttccgTATCGCCTTC
CTcgCTCGCCCGcTGGGCTCGgCGCTGTTCGGCCACTTCGGCGACCGCATCGGGCGCAAGTCAACCCTGGTC
GCCTCGCTGCTGCTGATGGGGGTATCCACCACCCTGATCGGCGTCCTCCCCGGCTACGACAGCATCGGCTAC
TGGGCGCCGTTGCTGCTCTGCGTGCTGCGCTTCGGCCAGGGCCTCGGCCTCGGCGGCGAGTGGGGCGGCGCC
GCGCTGCTGGCCACGGAGAACGCGCCGGCCGGCAAGCGCGCCTGGTTCGGCATGTTTCCCCAGCTCGGCCCG
TCGATCGGCTTCCTCGCCGCCAACGGCCTGTTCCTGGCCCTGGCGATGCTACTCAGCGAGGAGCAGTTCCGT
GACTGGGGCTGGCGGATCCCGTTCCTGCTCAGCGCGGCGCTGGTCGTGGTCGGCCTCTACGTACGCCTGAAG
CTGGCGGAAACCCCGGTGTTCGCCAAGGCCATGGCCAAGCACGAGAGGGTCCGCCTGCCGATCGCCGAGCTG
TTCGCCCAGCACTGGCGGCCGACCCTGCTCGGCGCCCTGGCGATGGTGGTGTGTTATGCGCTGTTCTATATC
TCCACGGTGTTCTCGCTGAGCTACGGGGTGGCCAGCCTCGGCTTCAGCCGCGAGGAGTTCCTTGGTCTGCTG
TGCCTCGCGGTGCTCTTCATGGCCGCCGCCACGCCGCTGTCGGCCTGGCTCAGCGACCGCTTCGGACGCAAG
CCGGTACTGCTGCTCGGCAGCCTGGCGGCGATCGCCTCCGGCTTCGCCATGGAGCCGCTGCTCAGCCAGGGC
TCGACGTTCAGCGTCGCCCTGTTCCTCTGCATCGAGCTGTTCCTGATGGGGGTCACCTTCGCCCCGATGGGC
GCGCTGCTGCCGGAAATATTCCCCACCCACGTGCGCTACACCGGCGCGTCGGCGGCCTACAACCTGGGCGGC
ATTCTCGGCGCCTCGGTGGCGCCCTATATCGCCCAGAAGCTGGTCGGCATCGGCGGCCTGGGCTGGGTCGGC
GGCTACGTCTCCGCAGCGGCGCTGCTCAGCCTGCTGGCGGTGCTGTGCCTGAAGGAAACCCGCGACAACGAC
CTCGGCGCAGTGTCCTGA
Translation:
MTAATLAADAAPEPANSTTRVAVASFIGTAIEFYDFYVYATAAALVIGPVFFPQTSGTAQMLSAFLTFRIAF
LARPLGSALFGHFGDRIGRKSTLVASLLLMGVSTTLIGVLPGYDSIGYWAPLLLCVLRFGQGLGLGGEWGGA
ALLATENAPAGKRAWFGMFPQLGPSIGFLAANGLFLALAMLLSEEQFRDWGWRIPFLLSAALVVVGLYVRLK
LAETPVFAKAMAKHERVRLPIAELFAQHWRPTLLGALAMVVCYALFYISTVFSLSYGVASLGFSREEFLGLL
CLAVLFMAAATPLSAWLSDRFGRKPVLLLGSLAAIASGFAMEPLLSQGSTFSVALFLCIELFLMGVTFAPMG
ALLPEIFPTHVRYTGASAAYNLGGILGASVAPYIAQKLVGIGGLGWVGGYVSAAALLSLLAVLCLKETRDND
LGAVS*
AnnotationID:1269GeneID:1260
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 10:10:11
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator family transporter
Cell Localization:()
Synonyms:yhjE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67080.1|AE016337_3 (AE016779) metabolite-proton symporter [Pseudomonas putida KT2440]
          Length = 432

 Score =  721 bits (1860), Expect = 0.0
 Identities = 358/433 (82%), Positives = 394/433 (90%), Gaps = 1/433 (0%)

>gb|AAN82770.1|AE016768_188 (AE016768) Hypothetical metabolite transport protein yhjE
           [Escherichia coli CFT073]
          Length = 440

 Score =  468 bits (1205), Expect = e-131
 Identities = 244/437 (55%), Positives = 309/437 (70%), Gaps = 5/437 (1%)








 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  97.3% aligned
Score =  144 bits (365), Expect = 4e-35
Identities = 116/449 (25%), Positives = 170/449 (37%), Gaps = 53/449 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19666




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31809




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1260_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1260
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2292
                           PA3749_tr
                           translation of PA3749
                           437
                           99.54
                           99.77
                           0
                           2198.0
     

     
     
74482
                           gb|AAG07136.1|AE004794_1
                           (AE004794) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           437
                           99.54
                           99.77
                           0
                           2198.0
     

     
     
74483
                           gb|AAN67080.1|AE016337_3
                           (AE016779) metabolite-proton symporter [Pseudomonas putida KT2440]
                           437
                           81.92
                           90.16
                           5
                           1862.0
     

     
     
74484
                           gb|AAO54990.1|
                           (AE016861) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           442
                           81.90
                           89.36
                           9
                           1851.0
     

     
     
74485
                           emb|CAD16563.1|
                           (AL646072) PUTATIVE METABOLITE TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           443
                           74.71
                           83.97
                           10
                           1698.0
     

     






      

          
GC ORFID: 44262How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3749Glimmer Score: 

          
Start: 3597185Stop: 3598498

          
Length: 1314


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3749 translation of PA3749Homolog Bit Score 851.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4837 (ORF: BLASTX 724.0), t_PA3749 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCGCCACCCTCGCCGCCGACGCCGCTCCGGAACCGGCCAACTCGACCACCCGGGTCGCAGTCGCC 
AGCTTCATCGGCACCGCCATCGAATTCTACGATTTCTACGTCTATGCCACTGCCGCCGCCCTGGTGATCGGT 
CCGGTATTCTtcccGCAGACATCCGGCACCGCGCAGATGCTCAGCGCCTTCCTCaccttccgTATCGCCTTC 
CTcgCTCGCCCGcTGGGCTCGgCGCTGTTCGGCCACTTCGGCGACCGCATCGGGCGCAAGTCAACCCTGGTC 
GCCTCGCTGCTGCTGATGGGGGTATCCACCACCCTGATCGGCGTCCTCCCCGGCTACGACAGCATCGGCTAC 
TGGGCGCCGTTGCTGCTCTGCGTGCTGCGCTTCGGCCAGGGCCTCGGCCTCGGCGGCGAGTGGGGCGGCGCC 
GCGCTGCTGGCCACGGAGAACGCGCCGGCCGGCAAGCGCGCCTGGTTCGGCATGTTTCCCCAGCTCGGCCCG 
TCGATCGGCTTCCTCGCCGCCAACGGCCTGTTCCTGGCCCTGGCGATGCTACTCAGCGAGGAGCAGTTCCGT 
GACTGGGGCTGGCGGATCCCGTTCCTGCTCAGCGCGGCGCTGGTCGTGGTCGGCCTCTACGTACGCCTGAAG 
CTGGCGGAAACCCCGGTGTTCGCCAAGGCCATGGCCAAGCACGAGAGGGTCCGCCTGCCGATCGCCGAGCTG 
TTCGCCCAGCACTGGCGGCCGACCCTGCTCGGCGCCCTGGCGATGGTGGTGTGTTATGCGCTGTTCTATATC 
TCCACGGTGTTCTCGCTGAGCTACGGGGTGGCCAGCCTCGGCTTCAGCCGCGAGGAGTTCCTTGGTCTGCTG 
TGCCTCGCGGTGCTCTTCATGGCCGCCGCCACGCCGCTGTCGGCCTGGCTCAGCGACCGCTTCGGACGCAAG 
CCGGTACTGCTGCTCGGCAGCCTGGCGGCGATCGCCTCCGGCTTCGCCATGGAGCCGCTGCTCAGCCAGGGC 
TCGACGTTCAGCGTCGCCCTGTTCCTCTGCATCGAGCTGTTCCTGATGGGGGTCACCTTCGCCCCGATGGGC 
GCGCTGCTGCCGGAAATATTCCCCACCCACGTGCGCTACACCGGCGCGTCGGCGGCCTACAACCTGGGCGGC 
ATTCTCGGCGCCTCGGTGGCGCCCTATATCGCCCAGAAGCTGGTCGGCATCGGCGGCCTGGGCTGGGTCGGC 
GGCTACGTCTCCGCAGCGGCGCTGCTCAGCCTGCTGGCGGTGCTGTGCCTGAAGGAAACCCGCGACAACGAC 
CTCGGCGCAGTGTCCTGA