ViewGene
Locus Name:
GeneID:
Location:

GeneID:126
TrivialName: PA14_47380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47380
PAO1 Ortholog Locus:PA1302
Sequence Length:2556
Protein Length:851
Start: 4223049
Stop: 4220494
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04691.1|AE004559_10 (AE004559) probable heme utilization protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 849/851 (99%), Positives = 850/851 (99%)
Sequence:
ATGACCTTGCCTTTCACCCGCGCCGCCTGGCGCCCGCTGTGTTCCGCCGCCGTGCTCGGCGCCGCGTTGTGG
GCCGCCGGCGCCAGCGCTGCCGAACGACGCTTCGACCTGCCGGCGCAGCCGCTGGCCGCCTCGCTGTCGCGC
CTGGCGCAGCAGGCGCAGGTCCAGGTGCTGTTCGACGAGTCGCTCCTGCGGGGCCTGCGCGCTCCGGCGCTG
AGCGGCAGCTACGGGGTGCGCGAGGCGCTGGAGCGGTTGCTGGTCGGTTCCGAGCTGGAGCTGGTGGAGGCG
GGCGGCGGCTACGTGGTGCGCCGGCGCCAGGTCGACGCCTACAGCGACAACGCGTTGCAACTGGACGCGCAG
ACCATCGTCGGCAACGGTCGCGAAGTGGACGCCAGCAACGTCGGCCGCTCGACCCTGACCCGGCGGGATATC
GAACGCCAGCAGGCGGACAACATCCCCAGCCTGCTGCAGACCCTGCCCGGGGTGACCATGGGCGGCTCGCCC
AAGCCGGGCGGACAGACCACCAACATCTGGGGCCTGGGCGACGCCGAGGACGTGCCCTATACCCTGGACGGC
GCGCAGAAGAGCGGCTTCGAGCGCTACCAGCAAGGCACCGTGTTCATCGAACCGGAAATGATCAAGCGCATC
GAGGTGGAGAAGGGGCCGCACTCGGTGTTCACCGGCAATGGCGGCTTCGGCGGCACCGTGCACATGGAGACC
AAGGACGCGCCGGACCTGCTGCGCGAAGGCCGCGACCTCGGCGCCATGCTCAAGTACGGCTATCACTCCAAC
GACCAGCAGAAGATCTACTCCGGCGCCGTGTTCGGCCGCAGCGAAGACCGCCGCGTCGATGCCCTGCTCTAC
CTCAACGGCCGCGACGGCCGCGACATGAAGCTGGCCGACAACCTGCCGCTGTCGCCCACCGACTATCCGATC
AACCCCAAGCGCCTGCCCAACAGCGCCCAGGACGAGAAGACCGGCCTGTTCAAGCTCAACCTGCACCCCACC
GAGGAGCACGACCTGGGTTTCACCTACCTGCGCTCGAAAAGCTCGCGCTGGACGCCGTTCTCCGCCAGCAGC
TACCCGACCCCGCCGAGCCAGTGGACCATCGACCGCTACGGCTACGAGCTGGGCCTGACCCGCCTGCTGGCC
CACCGCGATACCACCGACACCACTTGGACCGGCAAGTACAACTACCATCCGCTGGACAATCCCTGGATCGAC
CTGCAACTGAGCTATTCCGACGCCCGCACCGAGCAGCTCGACCGTCGCGAGGACACCGCCTTCTACCAGCTC
GCCACCGGCGGCAAGCGGATGCGTACCGAGTACCAGGACAAGGTCCTGGAACTGCGCAACACCAGCCGTTTC
GATACCGGAGCGCTACAGCACGAGCTGACCCTGGGCGCGGCGCTGCACAAGCACAAGCGCGACATCCTCATG
CACATGCCGGGCAAGACCTATGAGACCCCGCGCTACAACTACGGCTGGCTGCAACCGGCATTCATGCCGGCC
GGCAAGCAGGACACGCAGAGCTTCTACATCCAGGACGCGATCACCTACGGCAGCCTGACCGTCACTCCATCG
ATGCGCTTCGACAGCGTGCGCAACGACGGCCAGGCCAACCTGGCGCCGATCTACGACAATCCCAAGCTCGGC
CATGACTATCGCGCCCAGACCTACTCCGGCTGGTCGCCGCGGCTGTCGGTGTTCTGGACCGCGACGCCGAAC
CTGGCGTTCTTCGCCGACTACACCGAGACCTGGCGAGCGCCGGTGATCGACGAGCAGTACGAAGTGCAGAAC
AGCTCGACCATCGGTGGCAGCAGCCGCGACCTGGACGCCGAGCGCATCCATGCGATCCGTGGCGGCAGCGTG
ATCAACCTGCCGGACCTGCTGGTCGCCGGCGACAGCCTGCAGATCCGCACCACGTTGTTCCAGAACCGCATC
AAGGACGAGATATTCCGCACCCGCAGCGTCGGCTGCAGCCAGCAGTCGATCGACAACGGCAGTATCGGCGGT
AGCTGCGGCGACATGCTGCCGCTGAGCAACTACCGCAACCTGCCGGGCCTGACCATCAAGGGCTTCGAGATC
GAGAGCTTCTACGACAGCCAGCGGCTGTTCGGCAGCCTGTCCTACTCGTGGATGACCGGCAAGCACGATGGT
GCCTACAGCAATCCCTGGGGACCGAACGTGTGGGCGCGCGACATCCCGCCGCCGAAGTGGGTGGCCATGCTC
GGCCTGAAGGTTCCGGAATGGGATGCCAAGCTCGGCTGGCAGGGCGAGTTCGTGCGCAAGACCGACCGCCTG
CCCAGCGATCGCTACAGCGGCGGGATGGGTACCGGTTCCGGCGATATCTACTGGGATCACGCGGCCAACGAC
AGCTACGACACCCATCGGCTGTTCGCCGAGTGGGTCCCGGCCAAGCTGGGCCTGAAGGACACCCGCATCGAC
TTCACCGTGGACAACCTGTTCAACCGCTCCTATCGCCAGCCGCTGGGCGGCGACCTGGTCTACAGCCAGGGA
CGCAACGCCAAGATCAGCGTCACCCAGTTCTTCTGA
Translation:
MTLPFTRAAWRPLCSAAVLGAALWAAGASAAERRFDLPAQPLAASLSRLAQQAQVQVLFDESLLRGLRAPAL
SGSYGVREALERLLVGSELELVEAGGGYVVRRRQVDAYSDNALQLDAQTIVGNGREVDASNVGRSTLTRRDI
ERQQADNIPSLLQTLPGVTMGGSPKPGGQTTNIWGLGDAEDVPYTLDGAQKSGFERYQQGTVFIEPEMIKRI
EVEKGPHSVFTGNGGFGGTVHMETKDAPDLLREGRDLGAMLKYGYHSNDQQKIYSGAVFGRSEDRRVDALLY
LNGRDGRDMKLADNLPLSPTDYPINPKRLPNSAQDEKTGLFKLNLHPTEEHDLGFTYLRSKSSRWTPFSASS
YPTPPSQWTIDRYGYELGLTRLLAHRDTTDTTWTGKYNYHPLDNPWIDLQLSYSDARTEQLDRREDTAFYQL
ATGGKRMRTEYQDKVLELRNTSRFDTGALQHELTLGAALHKHKRDILMHMPGKTYETPRYNYGWLQPAFMPA
GKQDTQSFYIQDAITYGSLTVTPSMRFDSVRNDGQANLAPIYDNPKLGHDYRAQTYSGWSPRLSVFWTATPN
LAFFADYTETWRAPVIDEQYEVQNSSTIGGSSRDLDAERIHAIRGGSVINLPDLLVAGDSLQIRTTLFQNRI
KDEIFRTRSVGCSQQSIDNGSIGGSCGDMLPLSNYRNLPGLTIKGFEIESFYDSQRLFGSLSYSWMTGKHDG
AYSNPWGPNVWARDIPPPKWVAMLGLKVPEWDAKLGWQGEFVRKTDRLPSDRYSGGMGTGSGDIYWDHAAND
SYDTHRLFAEWVPAKLGLKDTRIDFTVDNLFNRSYRQPLGGDLVYSQGRNAKISVTQFF*
AnnotationID:136GeneID:126
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 14:02:40
Gene Name:
Confidence Code:3
GeneProduct:putative heme utilization protein precursor
Cell Localization:(6) Outer membrane protein
Synonyms:hxuC
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01347,pfam00593,COG1629
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE35320.1| (BX640452) putative heme receptor [Bordetella bronchiseptica]
          Length = 747

 Score =  638 bits (1646), Expect = 0.0
 Identities = 353/753 (46%), Positives = 458/753 (60%), Gaps = 47/753 (6%)

>gb|AAC21789.1| (U32696) hemin receptor (hemR) [Haemophilus influenzae Rd]
          Length = 744

 Score =  538 bits (1386), Expect = e-152
 Identities = 309/745 (41%), Positives = 430/745 (57%), Gaps = 32/745 (4%)








 
Structural Features:
cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel.
CD-Length = 672 residues,  99.7% aligned
Score =  215 bits (548), Expect = 2e-56

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.3% aligned
Score =  188 bits (477), Expect = 3e-48
Identities = 152/765 (19%), Positives = 231/765 (30%), Gaps = 106/765 (13%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  99.6% aligned
Score =  176 bits (446), Expect = 9e-45
Identities = 152/812 (18%), Positives = 242/812 (29%), Gaps = 72/812 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17397




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37491




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:126_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:126
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
235
                           PA1302_tr
                           translation of PA1302
                           851
                           99.76
                           99.88
                           0
                           4516.0
     

     
     
16997
                           gb|AAG04691.1|AE004559_10
                           (AE004559) probable heme utilization protein precursor [Pseudomonas aeruginosa PAO1]
                           851
                           99.76
                           99.88
                           0
                           4516.0
     

     
     
17000
                           emb|CAE44786.1|
                           (BX640412) putative heme receptor [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           861
                           41.81
                           54.23
                           124
                           1687.0
     

     
     
16999
                           emb|CAE35320.1|
                           (BX640452) putative heme receptor [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           864
                           41.78
                           54.39
                           130
                           1693.0
     

     
     
16998
                           emb|CAE13532.1|
                           (BX571863) Hemin receptor precursor protein HemR [Photorhabdus luminescens subsp. laumondii TTO1]
                           870
                           40.00
                           55.74
                           123
                           1706.0
     

     






      

          
GC ORFID: 43128How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1302Glimmer Score: 

          
Start: 730860Stop: 733415

          
Length: 2556


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1302 translation of PA1302Homolog Bit Score 1744.0

          
Other Homologs:  t_PA1302 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTTGCCTTTCACCCGCGCCGCCTGGCGCCCGCTGTGTTCCGCCGCCGTGCTCGGCGCCGCGTTGTGG 
GCCGCCGGCGCCAGCGCTGCCGAACGACGCTTCGACCTGCCGGCGCAGCCGCTGGCCGCCTCGCTGTCGCGC 
CTGGCGCAGCAGGCGCAGGTCCAGGTGCTGTTCGACGAGTCGCTCCTGCGGGGCCTGCGCGCTCCGGCGCTG 
AGCGGCAGCTACGGGGTGCGCGAGGCGCTGGAGCGGTTGCTGGTCGGTTCCGAGCTGGAGCTGGTGGAGGCG 
GGCGGCGGCTACGTGGTGCGCCGGCGCCAGGTCGACGCCTACAGCGACAACGCGTTGCAACTGGACGCGCAG 
ACCATCGTCGGCAACGGTCGCGAAGTGGACGCCAGCAACGTCGGCCGCTCGACCCTGACCCGGCGGGATATC 
GAACGCCAGCAGGCGGACAACATCCCCAGCCTGCTGCAGACCCTGCCCGGGGTGACCATGGGCGGCTCGCCC 
AAGCCGGGCGGACAGACCACCAACATCTGGGGCCTGGGCGACGCCGAGGACGTGCCCTATACCCTGGACGGC 
GCGCAGAAGAGCGGCTTCGAGCGCTACCAGCAAGGCACCGTGTTCATCGAACCGGAAATGATCAAGCGCATC 
GAGGTGGAGAAGGGGCCGCACTCGGTGTTCACCGGCAATGGCGGCTTCGGCGGCACCGTGCACATGGAGACC 
AAGGACGCGCCGGACCTGCTGCGCGAAGGCCGCGACCTCGGCGCCATGCTCAAGTACGGCTATCACTCCAAC 
GACCAGCAGAAGATCTACTCCGGCGCCGTGTTCGGCCGCAGCGAAGACCGCCGCGTCGATGCCCTGCTCTAC 
CTCAACGGCCGCGACGGCCGCGACATGAAGCTGGCCGACAACCTGCCGCTGTCGCCCACCGACTATCCGATC 
AACCCCAAGCGCCTGCCCAACAGCGCCCAGGACGAGAAGACCGGCCTGTTCAAGCTCAACCTGCACCCCACC 
GAGGAGCACGACCTGGGTTTCACCTACCTGCGCTCGAAAAGCTCGCGCTGGACGCCGTTCTCCGCCAGCAGC 
TACCCGACCCCGCCGAGCCAGTGGACCATCGACCGCTACGGCTACGAGCTGGGCCTGACCCGCCTGCTGGCC 
CACCGCGATACCACCGACACCACTTGGACCGGCAAGTACAACTACCATCCGCTGGACAATCCCTGGATCGAC 
CTGCAACTGAGCTATTCCGACGCCCGCACCGAGCAGCTCGACCGTCGCGAGGACACCGCCTTCTACCAGCTC 
GCCACCGGCGGCAAGCGGATGCGTACCGAGTACCAGGACAAGGTCCTGGAACTGCGCAACACCAGCCGTTTC 
GATACCGGAGCGCTACAGCACGAGCTGACCCTGGGCGCGGCGCTGCACAAGCACAAGCGCGACATCCTCATG 
CACATGCCGGGCAAGACCTATGAGACCCCGCGCTACAACTACGGCTGGCTGCAACCGGCATTCATGCCGGCC 
GGCAAGCAGGACACGCAGAGCTTCTACATCCAGGACGCGATCACCTACGGCAGCCTGACCGTCACTCCATCG 
ATGCGCTTCGACAGCGTGCGCAACGACGGCCAGGCCAACCTGGCGCCGATCTACGACAATCCCAAGCTCGGC 
CATGACTATCGCGCCCAGACCTACTCCGGCTGGTCGCCGCGGCTGTCGGTGTTCTGGACCGCGACGCCGAAC 
CTGGCGTTCTTCGCCGACTACACCGAGACCTGGCGAGCGCCGGTGATCGACGAGCAGTACGAAGTGCAGAAC 
AGCTCGACCATCGGTGGCAGCAGCCGCGACCTGGACGCCGAGCGCATCCATGCGATCCGTGGCGGCAGCGTG 
ATCAACCTGCCGGACCTGCTGGTCGCCGGCGACAGCCTGCAGATCCGCACCACGTTGTTCCAGAACCGCATC 
AAGGACGAGATATTCCGCACCCGCAGCGTCGGCTGCAGCCAGCAGTCGATCGACAACGGCAGTATCGGCGGT 
AGCTGCGGCGACATGCTGCCGCTGAGCAACTACCGCAACCTGCCGGGCCTGACCATCAAGGGCTTCGAGATC 
GAGAGCTTCTACGACAGCCAGCGGCTGTTCGGCAGCCTGTCCTACTCGTGGATGACCGGCAAGCACGATGGT 
GCCTACAGCAATCCCTGGGGACCGAACGTGTGGGCGCGCGACATCCCGCCGCCGAAGTGGGTGGCCATGCTC 
GGCCTGAAGGTTCCGGAATGGGATGCCAAGCTCGGCTGGCAGGGCGAGTTCGTGCGCAAGACCGACCGCCTG 
CCCAGCGATCGCTACAGCGGCGGGATGGGTACCGGTTCCGGCGATATCTACTGGGATCACGCGGCCAACGAC 
AGCTACGACACCCATCGGCTGTTCGCCGAGTGGGTCCCGGCCAAGCTGGGCCTGAAGGACACCCGCATCGAC 
TTCACCGTGGACAACCTGTTCAACCGCTCCTATCGCCAGCCGCTGGGCGGCGACCTGGTCTACAGCCAGGGA 
CGCAACGCCAAGATCAGCGTCACCCAGTTCTTCTGA