ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1259

TrivialName: PA14_32570

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_32570

PAO1 Ortholog Locus: PA2480

Sequence Length: 1323

Protein Length: 440

Start: 2828954

Stop: 2827632

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05868.1|AE004675_9 (AE004675) probable two-component sensor [Pseudomonas aeruginosa PAO1] Identities = 440/440 (100%), Positives = 440/440 (100%)

Sequence:

ATGAGCCTGCGCCTGCGCCTGACCCTGATCCTCGGCTCGGCCTTCATCCTGCTCTGGTCGCTGGCCGCGGCC
TGGATGCTCTGCGACCTGCGCGGGCAGATGATGCGCTCCTTCGACCAACGCCTGGCGGCCTCGGCGCGGATG
GTCGCCGGCCTGCTCCAGCAGTTGCCGCAGCCGCAGCCGGCGGACGGCCAGACCACGCGCCTGAGCGCGGAG
CAACTGGGGATTCCCAACGGCATGGCCTGCCAGGTCAGCTCATTGCGCGGCGAAGTCCTGGCGCAGAGCCAT
GCCACCCCGGAGCGGGCGCTGGACAGCACCGCCAGCGGCTTCCGCGACCAGGAAATCAACGGCGTGCTGTGG
CGCAGCTTCACCGTGCAGGCCGGCGACCTGCGGGTCAGCACCGCCGACCGCCTGGAAGAGCGCGACGTGCTG
CAACGCTCGGTGGTGGTGGCCGCCGCGGTGCCGGTGACGGTCGCCCTGCTCGGCAGCCTGGCCCTGCTCTGG
CTCGGCGCCGGCCAGGGTCTGGCGCCGCTCAAGCGGATTCGCGACGCCCTCACCCGGCGCGGCGCCGACTCG
CTGGAGCCACTGGAGCTGGCGGCCCTGCCGAGCGAACTGAAGCCGCTGGTGGAAACCCAGAACCAGTTGTTC
CAGCGCATCGCCCAGGCCATCGAACGCGAGCGACGCCTGACCGGCGATGCCGCCCACGAACTGCGCAGCCCG
CTGACCGCGATCAAGACCCACCTGCAGGTCGCGCGCATGACCGAGGGCGCCGCCGCCGAGCAGGCCCTGGCC
CACGCCGAGGAAGGCGCCGACCGTCTGCATCGGACACTGGACCAGCTGTTGCTGCTGGCGCGGGTGGAAGGC
AGCCTGTCGTTCGACGACGGCGTGCAGTGCAGCGCCGAGGACGCCGCCCGGGTGGCCATGCACGACGCCGGC
CACGGCGACGTGCGGATGTTCGAACTGAAGCTGGCCGACGGCTTGTCCGAGGCGCCGCTGGAAGTCCCCTCG
GTGCTGGCCATCGCCGCGCTGCGCAACCTGCTGGACAACGCCCTGCGCCACACCGCCGCCGGCACCCGGGTG
GAGCTGGCGGTGGAAACCGCGCAAGGCTGCGCGCGCTTCCACGTCCGCGACCACGGTCCGGGCATCGCCGAA
ACCGACCTGCCGCACCTCACCCGGCGCTTCTGGCGCCACGGCAAGAGCGGCGGCAGCGGGCTCGGTCTGGCC
ATCGTCCAGGCCATCGTGCAACGCTGCCAATGCCGGCTGGACTTCGACAGCCGCGCGGACGGCCTGCGGGTG
ACGCTGGAAATGCCGCTGCGCGAGTGA

Translation:

MSLRLRLTLILGSAFILLWSLAAAWMLCDLRGQMMRSFDQRLAASARMVAGLLQQLPQPQPADGQTTRLSAE
QLGIPNGMACQVSSLRGEVLAQSHATPERALDSTASGFRDQEINGVLWRSFTVQAGDLRVSTADRLEERDVL
QRSVVVAAAVPVTVALLGSLALLWLGAGQGLAPLKRIRDALTRRGADSLEPLELAALPSELKPLVETQNQLF
QRIAQAIERERRLTGDAAHELRSPLTAIKTHLQVARMTEGAAAEQALAHAEEGADRLHRTLDQLLLLARVEG
SLSFDDGVQCSAEDAARVAMHDAGHGDVRMFELKLADGLSEAPLEVPSVLAIAALRNLLDNALRHTAAGTRV
ELAVETAQGCARFHVRDHGPGIAETDLPHLTRRFWRHGKSGGSGLGLAIVQAIVQRCQCRLDFDSRADGLRV
TLEMPLRE*

AnnotationID:1268 GeneID:1259

AnnotatorUID: danlee

Modification Date/Time: 2004-03-08 18:06:59

Gene Name:

Confidence Code: 3

GeneProduct: probable two-component sensor

Cell Localization: ()

Synonyms: PA2480

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (28) Two-component regulatory systems

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2521

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19664

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1259

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2291 PA2480_tr translation of PA2480 440 99.99 99.99 0 2199.0

74478 gb|AAG05868.1|AE004675_9 (AE004675) probable two-component sensor [Pseudomonas aeruginosa PAO1] 440 99.99 99.99 0 2199.0

74480 gb|AAF80269.1|AF155506_3 (AF155506) ArmS [Pseudomonas sp. JR1] 441 67.12 79.13 2 1457.0

74479 gb|AAN69805.1|AE016619_3 (AE016789) sensor histidine kinase [Pseudomonas putida KT2440] 442 66.51 79.18 4 1466.0

74481 gb|AAN69808.1|AE016619_6 (AE016789) conserved domain protein [Pseudomonas putida KT2440] 465 15.05 20.00 334 316.0

GC ORFID: `44261`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2480`	Glimmer Score:
Start: `2124970`	Stop: `2126292`
Length: `1323`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2480 translation of PA2480`	Homolog Bit Score `851.0`
Other Homologs: `t_PA2480 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCCTGCGCCTGCGCCTGACCCTGATCCTCGGCTCGGCCTTCATCCTGCTCTGGTCGCTGGCCGCGGCC TGGATGCTCTGCGACCTGCGCGGGCAGATGATGCGCTCCTTCGACCAACGCCTGGCGGCCTCGGCGCGGATG GTCGCCGGCCTGCTCCAGCAGTTGCCGCAGCCGCAGCCGGCGGACGGCCAGACCACGCGCCTGAGCGCGGAG CAACTGGGGATTCCCAACGGCATGGCCTGCCAGGTCAGCTCATTGCGCGGCGAAGTCCTGGCGCAGAGCCAT GCCACCCCGGAGCGGGCGCTGGACAGCACCGCCAGCGGCTTCCGCGACCAGGAAATCAACGGCGTGCTGTGG CGCAGCTTCACCGTGCAGGCCGGCGACCTGCGGGTCAGCACCGCCGACCGCCTGGAAGAGCGCGACGTGCTG CAACGCTCGGTGGTGGTGGCCGCCGCGGTGCCGGTGACGGTCGCCCTGCTCGGCAGCCTGGCCCTGCTCTGG CTCGGCGCCGGCCAGGGTCTGGCGCCGCTCAAGCGGATTCGCGACGCCCTCACCCGGCGCGGCGCCGACTCG CTGGAGCCACTGGAGCTGGCGGCCCTGCCGAGCGAACTGAAGCCGCTGGTGGAAACCCAGAACCAGTTGTTC CAGCGCATCGCCCAGGCCATCGAACGCGAGCGACGCCTGACCGGCGATGCCGCCCACGAACTGCGCAGCCCG CTGACCGCGATCAAGACCCACCTGCAGGTCGCGCGCATGACCGAGGGCGCCGCCGCCGAGCAGGCCCTGGCC CACGCCGAGGAAGGCGCCGACCGTCTGCATCGGACACTGGACCAGCTGTTGCTGCTGGCGCGGGTGGAAGGC AGCCTGTCGTTCGACGACGGCGTGCAGTGCAGCGCCGAGGACGCCGCCCGGGTGGCCATGCACGACGCCGGC CACGGCGACGTGCGGATGTTCGAACTGAAGCTGGCCGACGGCTTGTCCGAGGCGCCGCTGGAAGTCCCCTCG GTGCTGGCCATCGCCGCGCTGCGCAACCTGCTGGACAACGCCCTGCGCCACACCGCCGCCGGCACCCGGGTG GAGCTGGCGGTGGAAACCGCGCAAGGCTGCGCGCGCTTCCACGTCCGCGACCACGGTCCGGGCATCGCCGAA ACCGACCTGCCGCACCTCACCCGGCGCTTCTGGCGCCACGGCAAGAGCGGCGGCAGCGGGCTCGGTCTGGCC ATCGTCCAGGCCATCGTGCAACGCTGCCAATGCCGGCTGGACTTCGACAGCCGCGCGGACGGCCTGCGGGTG ACGCTGGAAATGCCGCTGCGCGAGTGA