ViewGene
Locus Name:
GeneID:
Location:

GeneID:1258
TrivialName: PA14_72960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72960
PAO1 Ortholog Locus:PA5530
Sequence Length:1308
Protein Length:435
Start: 6496412
Stop: 6497719
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08915.1|AE004965_7 (AE004965) probable MFS dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
Identities = 435/435 (100%), Positives = 435/435 (100%)
Sequence:
ATGGAAAGCGCCAACGCCATTTCCGCGTCTGCCCAGCCCCGCACCACTTCGCAACGCATCAAGTCGATCTTC
AGCGGTTCCGTCGGCAACCTGGTCGAGTGGTACGACTGGTACGTCTACGCCGCCTTCTCGCTGTACTTCGCC
AAGGCATTCTTCCCCCAGGGCGACATGACCGCCCAACTGCTGAACACCGCAGCTATCTTCGCCGTGGGCTTC
CTGATGCGCCCGATCGGTGGCTGGCTGATGGGTATCTATGCCGACCGTAAGGGCCGCAAGGCGGCGTTGCTG
GCCTCGGTGCTGCTGATGTGCTTTGGCTCGCTGATCATCGCCCTGACCCCCAGCTATGAAACCATCGGCGTC
GCCGCGCCGATCCTGCTGGTGGTCGCGCGCCTGCTCCAGGGCCTGTCGGTCGGCGGCGAATACGGCACCTCC
GCCACCTACCTGAGCGAGATGGCGAACAAGGAACAGCGCGGGTTCTTCTCCAGCTTCCAGTACGTGACCCTG
ATTTCCGGCCAGCTCATCGCCCTGGCGGTGCTGATCGTCCTGCAACAGACCCTGACCGTAGAACAACTGGAA
AGCTGGGGCTGGCGCGTCCCCTTCTTCATCGGCGCGCTGTGCGCAGTGGTGGCGATGTTCCTGCGTCGCGGC
ATGGAAGAGACCGAGTCCTTCTCGAAGAAGAAGGAAGAGCCGAAGGAAAGCCTGCTGCGCACCCTGCTGCGC
CACCCGAAGGAAGTGCTGACCGTGGTCGGCCTGACCATGGGCGGCACCCTGGCCTTCTACACCTACACCACC
TACATGCAGAAGTACCTGGTGAACACGGTAGGCATGAGCAAGACCGATTCGACCATGATCTCGGCTGCCACC
CTGTTCCTCTTCATGCTGCTGCAGCCCATCGTCGGCGCCCTCTCCGACAAGATCGGCCGGCGGCCGATCCTG
ATCGCCTTCGGCGTACTCGGCACCGTCTTCACCTACCCGATCCTCAGCACCCTGCACAGCGTCGACAGCTGG
TGGGGCGCGTTCTTCCTGATCATGGCGGCGCTGGTGATCGTCAGCGGCTACACCTCGATCAACGCGGTAGTG
AAGGCCGAACTGTTCCCCACCGAGATCCGCGCCCTGGGCGTCGGCCTGCCGTATGCCCTGACCGTGTCGATC
TTCGGCGGCACCGCCGAATACGTTGCCTTGTGGTTCAAGAGCGTCGGCCTGGAGAGCGGCTTCTACTGGTAC
GTCACCGCCTGCATCGCCTGCTCGCTGCTGGTCTATGTGTTCATGAAGGACACCCAGAAGCACTCGAAGATC
ACGACCGATTGA
Translation:
MESANAISASAQPRTTSQRIKSIFSGSVGNLVEWYDWYVYAAFSLYFAKAFFPQGDMTAQLLNTAAIFAVGF
LMRPIGGWLMGIYADRKGRKAALLASVLLMCFGSLIIALTPSYETIGVAAPILLVVARLLQGLSVGGEYGTS
ATYLSEMANKEQRGFFSSFQYVTLISGQLIALAVLIVLQQTLTVEQLESWGWRVPFFIGALCAVVAMFLRRG
MEETESFSKKKEEPKESLLRTLLRHPKEVLTVVGLTMGGTLAFYTYTTYMQKYLVNTVGMSKTDSTMISAAT
LFLFMLLQPIVGALSDKIGRRPILIAFGVLGTVFTYPILSTLHSVDSWWGAFFLIMAALVIVSGYTSINAVV
KAELFPTEIRALGVGLPYALTVSIFGGTAEYVALWFKSVGLESGFYWYVTACIACSLLVYVFMKDTQKHSKI
TTD*
AnnotationID:1267GeneID:1258
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 06:06:31
Gene Name:
Confidence Code:3
GeneProduct:putative MFS dicarboxylate transporter
Cell Localization:()
Synonyms:kgtP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative MFS family alpha-ketoglutarate permease
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57747.1| (AE016871) metabolite-proton symporter, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 441

 Score =  755 bits (1949), Expect = 0.0
 Identities = 379/441 (85%), Positives = 413/441 (93%), Gaps = 6/441 (1%)

>gb|AAN67023.1|AE016330_12 (AE016779) dicarboxylate MFS transporter [Pseudomonas putida
           KT2440]
          Length = 439

 Score =  750 bits (1937), Expect = 0.0
 Identities = 373/432 (86%), Positives = 407/432 (94%), Gaps = 1/432 (0%)

>emb|CAD17158.1| (AL646076) PUTATIVE ALPHA-KETOGLUTARATE PERMEASE TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
          Length = 447

 Score =  626 bits (1615), Expect = e-179
 Identities = 312/417 (74%), Positives = 358/417 (85%), Gaps = 2/417 (0%)






 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  96.9% aligned
Score =  158 bits (402), Expect = 9e-40
Identities = 95/447 (21%), Positives = 172/447 (38%), Gaps = 57/447 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2519




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19662




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33314




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1258_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1258
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2289
                           PA5530_tr
                           translation of PA5530
                           435
                           99.99
                           99.99
                           0
                           2201.0
     

     
     
74433
                           gb|AAG08915.1|AE004965_7
                           (AE004965) probable MFS dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
                           435
                           99.99
                           99.99
                           0
                           2201.0
     

     
     
74434
                           gb|AAO57747.1|
                           (AE016871) metabolite-proton symporter, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           441
                           85.94
                           93.65
                           6
                           1955.0
     

     
     
74435
                           gb|AAN67023.1|AE016330_12
                           (AE016779) dicarboxylate MFS transporter [Pseudomonas putida KT2440]
                           440
                           85.00
                           93.18
                           6
                           1935.0
     

     
     
74436
                           emb|CAD17158.1|
                           (AL646076) PUTATIVE ALPHA-KETOGLUTARATE PERMEASE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           448
                           70.31
                           81.47
                           14
                           1615.0
     

     






      

          
GC ORFID: 44260How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5530Glimmer Score: 

          
Start: 5760101Stop: 5761408

          
Length: 1308


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5530 translation of PA5530Homolog Bit Score 852.0

          
Other Homologs:  t_PA0229 (ORF: BLASTX 470.0), psyr_15may02_Scaffold5_revised_gene6194 (ORF: BLASTX 456.0), psyr_15may02_Scaffold1_revised_gene289 (ORF: BLASTX 431.0), t_PA5530 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAGCGCCAACGCCATTTCCGCGTCTGCCCAGCCCCGCACCACTTCGCAACGCATCAAGTCGATCTTC 
AGCGGTTCCGTCGGCAACCTGGTCGAGTGGTACGACTGGTACGTCTACGCCGCCTTCTCGCTGTACTTCGCC 
AAGGCATTCTTCCCCCAGGGCGACATGACCGCCCAACTGCTGAACACCGCAGCTATCTTCGCCGTGGGCTTC 
CTGATGCGCCCGATCGGTGGCTGGCTGATGGGTATCTATGCCGACCGTAAGGGCCGCAAGGCGGCGTTGCTG 
GCCTCGGTGCTGCTGATGTGCTTTGGCTCGCTGATCATCGCCCTGACCCCCAGCTATGAAACCATCGGCGTC 
GCCGCGCCGATCCTGCTGGTGGTCGCGCGCCTGCTCCAGGGCCTGTCGGTCGGCGGCGAATACGGCACCTCC 
GCCACCTACCTGAGCGAGATGGCGAACAAGGAACAGCGCGGGTTCTTCTCCAGCTTCCAGTACGTGACCCTG 
ATTTCCGGCCAGCTCATCGCCCTGGCGGTGCTGATCGTCCTGCAACAGACCCTGACCGTAGAACAACTGGAA 
AGCTGGGGCTGGCGCGTCCCCTTCTTCATCGGCGCGCTGTGCGCAGTGGTGGCGATGTTCCTGCGTCGCGGC 
ATGGAAGAGACCGAGTCCTTCTCGAAGAAGAAGGAAGAGCCGAAGGAAAGCCTGCTGCGCACCCTGCTGCGC 
CACCCGAAGGAAGTGCTGACCGTGGTCGGCCTGACCATGGGCGGCACCCTGGCCTTCTACACCTACACCACC 
TACATGCAGAAGTACCTGGTGAACACGGTAGGCATGAGCAAGACCGATTCGACCATGATCTCGGCTGCCACC 
CTGTTCCTCTTCATGCTGCTGCAGCCCATCGTCGGCGCCCTCTCCGACAAGATCGGCCGGCGGCCGATCCTG 
ATCGCCTTCGGCGTACTCGGCACCGTCTTCACCTACCCGATCCTCAGCACCCTGCACAGCGTCGACAGCTGG 
TGGGGCGCGTTCTTCCTGATCATGGCGGCGCTGGTGATCGTCAGCGGCTACACCTCGATCAACGCGGTAGTG 
AAGGCCGAACTGTTCCCCACCGAGATCCGCGCCCTGGGCGTCGGCCTGCCGTATGCCCTGACCGTGTCGATC 
TTCGGCGGCACCGCCGAATACGTTGCCTTGTGGTTCAAGAGCGTCGGCCTGGAGAGCGGCTTCTACTGGTAC 
GTCACCGCCTGCATCGCCTGCTCGCTGCTGGTCTATGTGTTCATGAAGGACACCCAGAAGCACTCGAAGATC 
ACGACCGATTGA