ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1257

TrivialName: PA14_33910

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_33910

PAO1 Ortholog Locus: PA2377

Sequence Length: 1275

Protein Length: 424

Start: 3015569

Stop: 3014295

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05765.1|AE004664_2 (AE004664) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 420/424 (99%), Positives = 423/424 (99%)

Sequence:

ATGAGGGGCGCGCCTGCGCGCCGGCCTCACCGGGAGCGGCGACGCTCGTTTTCAGCAGAGGAACGGCACATG
ATCGACAGGGTGAAGCCGCTGATGGCGGCATGGGTTCTGGTCTTCGCATCTTCTTCGTTCGCCGGCGAAACG
GCGGGAAAATTGCCACGAAAGCCAGCTCTAGGGCCGGAAACCGCGGGGGCGACCCTGGTCATCCCCGGCGAG
ACCGACAGGCTCGCCTCGCTCTACGCCCGCGCACGGGGCGAAGGCGGCAAGGTGGTGCTCTGGGCCGGCGGC
GACGCGCCGAACCAGATGGACTGGTTGAAGACGGCCTTCGAGAGCCGCTTTCCCGGCGTGACCCTGGACGTC
ACGGTGGACCTCTCCAAGTTCCACGACCTGCGCATCGACCAGGAACTCGCCGCCGGCACCCTGACGCCGGAC
GTGGCGATGCTGCAAACCACCTTCGATTTCGACAAATGGAAGGCCCGCGACGTGCTGCTGCGCTACAAGCCG
ATCGGCTTCGCCCGGCAGAAGAAAGGCTACGCCGATCCCGACGGCGCCTATGTCACGGCCTACAACAACGCC
TTCGTGCCGACCTACGCTTCCGTCCGGCTGCCAGCGGAGCGCTATCCGACGCGCTTCGCCGATTACCTGAAG
CCGGCCTTCAAGGGCAAGCTGGTGCTGACCTACCCCCATGACGACGATGCGGTGCTGTACGTCTACGACAAG
CTGGAACGGCGCTACGGCAGCGGTTTCCTGCGCGCCCTGGCGGCGCAGAAGCCGAACTTCCTGCGCGGCACG
GCGGCGCCGGCGGCCTCGGTGGGCACCGACTCCATCGGTTCGCTGGGCAACCTGACCGGCTATGCGACCGAC
AGCGATACGCCGGCCGGCTACTTCATCCCGACCGACGAGCCGTTCATCGTCTGGAACCAGCGCGCGGCGATC
TTCAAGGCCGCCCGTCATCCGGCCACGGCCAAGCTGCTGCTGTCCTACCTGGGCTCGGCCGAGTTCCAGTCC
AGCTACGGCGGCTGGCGCGCCCGCGCTGACGTCGGCGAAGCGCCTGGGCTGCCGCCACTGGAGTCGCTGAAG
AACGTCGACGTGCACGATTTCACCCGCTGGATGGCCGATCGCCAACGGGTGGCCAGCCTGCGCAGGCACATG
GCGGAAATCTTCGGCCCGGTACGCGGCGAGTCGCCGTTGCGCGACCCGGCGCTGATGAGCCTGCTGGGGCTG
ACGGCGAACGACATCGTCGCCTTGCCCGAACCGGACCTGCCGATCTACTGA

Translation:

MRGAPARRPHRERRRSFSAEERHMIDRVKPLMAAWVLVFASSSFAGETAGKLPRKPALGPETAGATLVIPGE
TDRLASLYARARGEGGKVVLWAGGDAPNQMDWLKTAFESRFPGVTLDVTVDLSKFHDLRIDQELAAGTLTPD
VAMLQTTFDFDKWKARDVLLRYKPIGFARQKKGYADPDGAYVTAYNNAFVPTYASVRLPAERYPTRFADYLK
PAFKGKLVLTYPHDDDAVLYVYDKLERRYGSGFLRALAAQKPNFLRGTAAPAASVGTDSIGSLGNLTGYATD
SDTPAGYFIPTDEPFIVWNQRAAIFKAARHPATAKLLLSYLGSAEFQSSYGGWRARADVGEAPGLPPLESLK
NVDVHDFTRWMADRQRVASLRRHMAEIFGPVRGESPLRDPALMSLLGLTANDIVALPEPDLPIY*

AnnotationID:1266 GeneID:1257

AnnotatorUID: diggins

Modification Date/Time: 2005-03-04 18:06:49

Gene Name:

Confidence Code: 3

GeneProduct: putative ABC-type transport protein, periplasmic component

Cell Localization: ()

Synonyms: PA2377

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1840

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component 
[Inorganic ion transport and metabolism]
CD-Length = 299 residues,  95.7% aligned
Score =  114 bits (287), Expect = 2e-26
Identities = 63/289 (21%), Positives = 94/289 (32%), Gaps = 20/289 (6%)

Genomic Context:

Comment:

ReferenceID:2517

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19660

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32921

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1257_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1257

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2288 PA2377_tr translation of PA2377 424 99.05 99.76 0 2202.0

74432 gb|AAG05765.1|AE004664_2 (AE004664) hypothetical protein PA2377 [Pseudomonas aeruginosa PAO1] 424 99.05 99.76 0 2202.0

GC ORFID: `44259`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2377`	Glimmer Score:
Start: `1938347`	Stop: `1939621`
Length: `1275`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2377 translation of PA2377`	Homolog Bit Score `852.0`
Other Homologs: `t_PA2377 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGGGGCGCGCCTGCGCGCCGGCCTCACCGGGAGCGGCGACGCTCGTTTTCAGCAGAGGAACGGCACATG ATCGACAGGGTGAAGCCGCTGATGGCGGCATGGGTTCTGGTCTTCGCATCTTCTTCGTTCGCCGGCGAAACG GCGGGAAAATTGCCACGAAAGCCAGCTCTAGGGCCGGAAACCGCGGGGGCGACCCTGGTCATCCCCGGCGAG ACCGACAGGCTCGCCTCGCTCTACGCCCGCGCACGGGGCGAAGGCGGCAAGGTGGTGCTCTGGGCCGGCGGC GACGCGCCGAACCAGATGGACTGGTTGAAGACGGCCTTCGAGAGCCGCTTTCCCGGCGTGACCCTGGACGTC ACGGTGGACCTCTCCAAGTTCCACGACCTGCGCATCGACCAGGAACTCGCCGCCGGCACCCTGACGCCGGAC GTGGCGATGCTGCAAACCACCTTCGATTTCGACAAATGGAAGGCCCGCGACGTGCTGCTGCGCTACAAGCCG ATCGGCTTCGCCCGGCAGAAGAAAGGCTACGCCGATCCCGACGGCGCCTATGTCACGGCCTACAACAACGCC TTCGTGCCGACCTACGCTTCCGTCCGGCTGCCAGCGGAGCGCTATCCGACGCGCTTCGCCGATTACCTGAAG CCGGCCTTCAAGGGCAAGCTGGTGCTGACCTACCCCCATGACGACGATGCGGTGCTGTACGTCTACGACAAG CTGGAACGGCGCTACGGCAGCGGTTTCCTGCGCGCCCTGGCGGCGCAGAAGCCGAACTTCCTGCGCGGCACG GCGGCGCCGGCGGCCTCGGTGGGCACCGACTCCATCGGTTCGCTGGGCAACCTGACCGGCTATGCGACCGAC AGCGATACGCCGGCCGGCTACTTCATCCCGACCGACGAGCCGTTCATCGTCTGGAACCAGCGCGCGGCGATC TTCAAGGCCGCCCGTCATCCGGCCACGGCCAAGCTGCTGCTGTCCTACCTGGGCTCGGCCGAGTTCCAGTCC AGCTACGGCGGCTGGCGCGCCCGCGCTGACGTCGGCGAAGCGCCTGGGCTGCCGCCACTGGAGTCGCTGAAG AACGTCGACGTGCACGATTTCACCCGCTGGATGGCCGATCGCCAACGGGTGGCCAGCCTGCGCAGGCACATG GCGGAAATCTTCGGCCCGGTACGCGGCGAGTCGCCGTTGCGCGACCCGGCGCTGATGAGCCTGCTGGGGCTG ACGGCGAACGACATCGTCGCCTTGCCCGAACCGGACCTGCCGATCTACTGA