ViewGene
Locus Name:
GeneID:
Location:

GeneID:1256
TrivialName: PA14_05690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05690
PAO1 Ortholog Locus:PA0437
Sequence Length:1272
Protein Length:423
Start: 505409
Stop: 504138
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03826.1|AE004481_2 (AE004481) cytosine deaminase [Pseudomonas aeruginosa PAO1]
Identities = 423/423 (100%), Positives = 423/423 (100%)
Sequence:
ATGCTGATTGACAACCTGCGCCTGCGCGGCCGCGAAGGTCTCTGGCAACTGCGCGTCGCCGATGGCCGTATC
GCCGCCCTGGTGCCGATGGAACAGGCCGCCGACGACGCCGGCGAGCGCCTGGACGGCGCCGGCGGTCTTGCC
GTGCCGCCGTTCATCGAGCCGCACATCCATCTCGACACCACCCAGACCGCCGGCCAGCCGGAGTGGAACCGC
TCCGGCACGCTGTTCGAAGGCATCGAGCGCTGGGCCCAGCGCAAGGCCCTGCTCAGCCACGAGGACGTCAAG
CAGCGCGCCTGGCAGACCCTGAAATGGCAGATCGCCAACGGCGTGCAGCACGTGCGCAGCCACGTCGACGTC
TCCGACCCGACCCTCACCGCGCTCAAGGCCATGCTCGAGGTGCGCGGCGAAGTGGCGCCCTGGGTCGACCTG
CAGATCGTCGCCTTCCCTCAGGAGGGCATTCTCTCCTACCCCAACGGCCTGGAACTGCTGGAGGAGTCGCTG
CGCCTGGGCGCCGACGTGGTGGGGGCGATCCCGCATTTCGAATTCACCCGCGAGCTGGGCGTCGAGTCGCTG
CACAAGGCCATCGACCTGGCCAAGCGCTACGACCTGCCGGTGGACGTGCATTGCGACGAGATCGACGACGAG
CAGTCGCGCTTCCTCGAGACCCTGGCCATGCTCGCCCATCGCGACGGCCTCGGCGCACGGGTCACCGCCAGC
CACACCACGGCGATGCACTCCTACAACGGCGCCTACACCTCGCGGCTGTTCCGCCTGCTGAAACTGTCGGGA
ATCAACTTCGTCGCCAACCCGCTGGTGAACATCCACCTGCAGGGTCGCTTCGACGACTACCCGAAGCGCCGC
GGCATCACCCGGGTCAAGGAACTGCTCGGTGCCGGGATCAACACCTGCTTCGGCCACGACGACGTGTTCGAC
CCCTGGTACCCGCTGGGCACCGCGAACATGCTGCAGGTGCTGCACATGGGCCTGCACGTGACGCAGATGATG
GGCTACGACGAGATCGACGGCGGCCTCGACCTGATCACCCGCAACAGCGCCCGCACCCTCGGCCTGCGGGAA
TACGGCATCGAGGTCGGCCATCCGGCCAACCTGCTGGTGCTGCCGGCCCGCGACGGCTTCGACGCGGTGCGC
CGGCAGGTCCCGGTGCGCTACTCGATCCGCGGCGGACGGCTGCTCGCCGAGACGGTCCCGGCGCAGACCACG
GTGTTCCTCGAACAGGCGGAAGCGGTGGACTTCACCCGCGCCAGCTGA
Translation:
MLIDNLRLRGREGLWQLRVADGRIAALVPMEQAADDAGERLDGAGGLAVPPFIEPHIHLDTTQTAGQPEWNR
SGTLFEGIERWAQRKALLSHEDVKQRAWQTLKWQIANGVQHVRSHVDVSDPTLTALKAMLEVRGEVAPWVDL
QIVAFPQEGILSYPNGLELLEESLRLGADVVGAIPHFEFTRELGVESLHKAIDLAKRYDLPVDVHCDEIDDE
QSRFLETLAMLAHRDGLGARVTASHTTAMHSYNGAYTSRLFRLLKLSGINFVANPLVNIHLQGRFDDYPKRR
GITRVKELLGAGINTCFGHDDVFDPWYPLGTANMLQVLHMGLHVTQMMGYDEIDGGLDLITRNSARTLGLRE
YGIEVGHPANLLVLPARDGFDAVRRQVPVRYSIRGGRLLAETVPAQTTVFLEQAEAVDFTRAS*
AnnotationID:1265GeneID:1256
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 12:12:13
Gene Name:codA
Confidence Code:2
GeneProduct:cytosine deaminase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0402
Secondary Functional Category(ies):
EC Number:3.5.4.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN78935.1|AE016756_118 (AE016756) Cytosine deaminase [Escherichia coli CFT073]
          Length = 432

 Score =  676 bits (1745), Expect = 0.0
 Identities = 323/419 (77%), Positives = 369/419 (88%)

>gb|AAL22203.1| (AE008853) putative cytosine deaminase [Salmonella typhimurium LT2]
          Length = 426

 Score =  667 bits (1722), Expect = 0.0
 Identities = 319/419 (76%), Positives = 368/419 (87%)

>gb|AAO70787.1| (AE016845) cytosine deaminase [Salmonella enterica subsp. enterica
           serovar Typhi Ty2]
          Length = 426

 Score =  667 bits (1720), Expect = 0.0
 Identities = 319/419 (76%), Positives = 367/419 (87%)






 
Structural Features:
COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases 
[Nucleotide transport and metabolism]
CD-Length = 421 residues,  93.8% aligned
Score =  251 bits (643), Expect = 7e-68
Identities = 133/414 (32%), Positives = 179/414 (43%), Gaps = 28/414 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2515




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19658




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33759




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1256_cdd.html


    		




 
URL:

















    ReferenceID:35352




  
Author/Investigator(s):
        Mol Microbiol. 1992 May;6(10):1335-44.





  
Title:
        Characterization of the Escherichia coli codBA operon encoding cytosine permease and cytosine deaminase.




  
PubMed:
        1640834


MedLine:
        




    
Source:
Mol Microbiol. 1992 May;6(10):1335-44.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1640834









           
Homologs By Global Alignment 

           

       



     
Gene ID:1256
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2287
                           PA0437_tr
                           translation of PA0437
                           423
                           99.99
                           99.99
                           0
                           2203.0
     

     
     
74401
                           gb|AAG03826.1|AE004481_2
                           (AE004481) cytosine deaminase [Pseudomonas aeruginosa PAO1]
                           423
                           99.99
                           99.99
                           0
                           2203.0
     

     
     
74409
                           dbj|BAB33813.1|
                           (AP002551) cytosine deaminase [Escherichia coli O157:H7]
                           429
                           75.05
                           85.78
                           8
                           1739.0
     

     
     
74408
                           gb|AAG54686.1|AE005213_2
                           (AE005213) cytosine deaminase [Escherichia coli O157:H7 EDL933]
                           429
                           75.05
                           85.78
                           8
                           1739.0
     

     
     
74406
                           gb|AAB25761.2|
                           (S56903) cytosine deaminase; CD [Escherichia coli]
                           429
                           75.05
                           85.54
                           8
                           1740.0
     

     






      

          
GC ORFID: 44258How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0437Glimmer Score: 

          
Start: 6306751Stop: 6305480

          
Length: 1272


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0437 translation of PA0437Homolog Bit Score 853.0

          
Other Homologs:  t_PA0437 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATTGACAACCTGCGCCTGCGCGGCCGCGAAGGTCTCTGGCAACTGCGCGTCGCCGATGGCCGTATC 
GCCGCCCTGGTGCCGATGGAACAGGCCGCCGACGACGCCGGCGAGCGCCTGGACGGCGCCGGCGGTCTTGCC 
GTGCCGCCGTTCATCGAGCCGCACATCCATCTCGACACCACCCAGACCGCCGGCCAGCCGGAGTGGAACCGC 
TCCGGCACGCTGTTCGAAGGCATCGAGCGCTGGGCCCAGCGCAAGGCCCTGCTCAGCCACGAGGACGTCAAG 
CAGCGCGCCTGGCAGACCCTGAAATGGCAGATCGCCAACGGCGTGCAGCACGTGCGCAGCCACGTCGACGTC 
TCCGACCCGACCCTCACCGCGCTCAAGGCCATGCTCGAGGTGCGCGGCGAAGTGGCGCCCTGGGTCGACCTG 
CAGATCGTCGCCTTCCCTCAGGAGGGCATTCTCTCCTACCCCAACGGCCTGGAACTGCTGGAGGAGTCGCTG 
CGCCTGGGCGCCGACGTGGTGGGGGCGATCCCGCATTTCGAATTCACCCGCGAGCTGGGCGTCGAGTCGCTG 
CACAAGGCCATCGACCTGGCCAAGCGCTACGACCTGCCGGTGGACGTGCATTGCGACGAGATCGACGACGAG 
CAGTCGCGCTTCCTCGAGACCCTGGCCATGCTCGCCCATCGCGACGGCCTCGGCGCACGGGTCACCGCCAGC 
CACACCACGGCGATGCACTCCTACAACGGCGCCTACACCTCGCGGCTGTTCCGCCTGCTGAAACTGTCGGGA 
ATCAACTTCGTCGCCAACCCGCTGGTGAACATCCACCTGCAGGGTCGCTTCGACGACTACCCGAAGCGCCGC 
GGCATCACCCGGGTCAAGGAACTGCTCGGTGCCGGGATCAACACCTGCTTCGGCCACGACGACGTGTTCGAC 
CCCTGGTACCCGCTGGGCACCGCGAACATGCTGCAGGTGCTGCACATGGGCCTGCACGTGACGCAGATGATG 
GGCTACGACGAGATCGACGGCGGCCTCGACCTGATCACCCGCAACAGCGCCCGCACCCTCGGCCTGCGGGAA 
TACGGCATCGAGGTCGGCCATCCGGCCAACCTGCTGGTGCTGCCGGCCCGCGACGGCTTCGACGCGGTGCGC 
CGGCAGGTCCCGGTGCGCTACTCGATCCGCGGCGGACGGCTGCTCGCCGAGACGGTCCCGGCGCAGACCACG 
GTGTTCCTCGAACAGGCGGAAGCGGTGGACTTCACCCGCGCCAGCTGA