ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1255

TrivialName: PA14_00550

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_00550

PAO1 Ortholog Locus: PA0043

Sequence Length: 1410

Protein Length: 469

Start: 56984

Stop: 55575

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03433.1|AE004444_2 (AE004444) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 452/459 (98%), Positives = 454/459 (98%)

Sequence:

GTGCGCCTACACCGGGGCGGAGAACCCGATGGATACCGGCGGCAGCGCCGGCCTCATGGCGGACGGCGTACC
ACCGTGCAGGCACCTCGGGGTCGTCTGCTGCTATGGTGCGCACAGGCACGTCGCCATCCTCTCTCCCGGCGA
ATGGAATCGAGCATGACGCTTTCCCTGGATCTGTTGTTGAGCCTGTGCACGGCCCTGGCCATCGGCCTTCTG
ATCGGCGCCGAGCGCGGCTGGCAAGAGCGCGACCACGAAGATGCGCGGCAGATCGCCGGAATCCGCACCTTC
AGCCTGGCCGGCCTGCTCGGCGGCTTCGCCACCCTGCTCGCGGGCGAACTGGGCAGCGCAGTCTGGGTAGCC
TTGCTGCTGGCCCTCGCGGCGCTGGCCGTGGCCGGCTACGTGAGCGACGTCAGGCGTGGCGGCGACCAGGGC
ATGACCACCGAGATCGCCCTACTGATGACCTTCCTCCTCGGCAGCCTCGCCCTCACCGAACAGCGCCTGCTG
GCTGCCGCCGGCGGCATCGTGCTGACCCTGCTGCTGAGCCTCAAGGACAAGCTCCACGCCCTGCTGAAGCGC
CTGACCGCCGAGGAACTGTCGGGCACCCTCAAGCTGCTGTTCATCTCCGTGGTCCTGCTGCCGGTGCTGCCC
AACCAGGGCTACGGTCCCTGGGCGTTCTTCAATCCCTACCTGACCTGGTGGATGGTGGTGCTGATCGCCGCC
CTCGGTTTCTCCGCCTACCTGGCCATCCGCCTGATCGGCTCGCGCAAGGGCCTGTTGCTGACCGCGGTGCTC
GGCGGCCTGGTGTCCTCCACGGTGATGACCCTGACCCTGGCGCGCCTGCGCGAGCGCATGCCCGACGCCCTG
TTGGCGTGCGCCCTGCTGGCGACCTCGGCGCTGATGTTCCCGCGCATCCTCGTCGAGATCGGCGCGATCCAC
CCGGCCTTGCTGAAGGAACTGGTCCTGCCATTCGCCGCCACCACCCTCGTCTACCTTGGCGGCACGCTGTTC
CACGCCCTGCGCGGCGGCCGCGCCAGCCAGGAGGCGCCCGACGAGCCAGGCCTGCGCAACCCCTTCGAACTG
CTCCCGGCCCTGCGCTTCGCCGCCCTGCTGAGCGCGATCCTGCTGTTGGTGGAGGTCGGCCGGCGGCTGTTC
GGCGATGCCGGCATCTATGCGGTCGCGCTGCTCTCCGGCCTCGCCGACGTCGACGCGATCACCCTGTCCCTG
GCCCGCGCGGCGCAGGGCGAACTCGATCCAGGCGTGGCCAGCCGCGGCATCGCCCTTGCCGCCCTGAGCAAC
AGCCTGGTCAAGGCCGGCCTGATCGTGCTGGTGGGCGGCAAGCGGCTGGCCCTGCAAACGCTACCCTTCAGC
CTGGCGGGGCTGCTGGTAGGAGCGCTGCTGATCCTGCTGTGA

Translation:

MRLHRGGEPDGYRRQRRPHGGRRTTVQAPRGRLLLWCAQARRHPLSRRMESSMTLSLDLLLSLCTALAIGLL
IGAERGWQERDHEDARQIAGIRTFSLAGLLGGFATLLAGELGSAVWVALLLALAALAVAGYVSDVRRGGDQG
MTTEIALLMTFLLGSLALTEQRLLAAAGGIVLTLLLSLKDKLHALLKRLTAEELSGTLKLLFISVVLLPVLP
NQGYGPWAFFNPYLTWWMVVLIAALGFSAYLAIRLIGSRKGLLLTAVLGGLVSSTVMTLTLARLRERMPDAL
LACALLATSALMFPRILVEIGAIHPALLKELVLPFAATTLVYLGGTLFHALRGGRASQEAPDEPGLRNPFEL
LPALRFAALLSAILLLVEVGRRLFGDAGIYAVALLSGLADVDAITLSLARAAQGELDPGVASRGIALAALSN
SLVKAGLIVLVGGKRLALQTLPFSLAGLLVGALLILL*

AnnotationID:1264 GeneID:1255

AnnotatorUID: diggins

Modification Date/Time: 2005-03-22 15:03:19

Gene Name:

Confidence Code: 3

GeneProduct: putative membrane protein

Cell Localization: ()

Synonyms: PA0043

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3174

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3174, COG3174, Predicted membrane protein
CD-Length = 371 residues,  99.7% aligned
Score =  261 bits (669), Expect = 1e-70
Identities = 189/379 (49%), Positives = 232/379 (61%), Gaps = 11/379 (2%)

Genomic Context:

Comment:

ReferenceID:14319

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19656

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33402

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1255_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1255

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2286 PA0043_tr translation of PA0043 469 96.37 96.80 9 2200.0

74400 gb|AAG03433.1|AE004444_2 (AE004444) hypothetical protein PA0043 [Pseudomonas aeruginosa PAO1] 469 96.37 96.80 9 2200.0

GC ORFID: `44257`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0043`	Glimmer Score:
Start: `5858321`	Stop: `5856912`
Length: `1410`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0043 translation of PA0043`	Homolog Bit Score `853.0`
Other Homologs: `t_PA0043 (ORF: GLIMMER)`
GC ORF Sequence
GTGCGCCTACACCGGGGCGGAGAACCCGATGGATACCGGCGGCAGCGCCGGCCTCATGGCGGACGGCGTACC ACCGTGCAGGCACCTCGGGGTCGTCTGCTGCTATGGTGCGCACAGGCACGTCGCCATCCTCTCTCCCGGCGA ATGGAATCGAGCATGACGCTTTCCCTGGATCTGTTGTTGAGCCTGTGCACGGCCCTGGCCATCGGCCTTCTG ATCGGCGCCGAGCGCGGCTGGCAAGAGCGCGACCACGAAGATGCGCGGCAGATCGCCGGAATCCGCACCTTC AGCCTGGCCGGCCTGCTCGGCGGCTTCGCCACCCTGCTCGCGGGCGAACTGGGCAGCGCAGTCTGGGTAGCC TTGCTGCTGGCCCTCGCGGCGCTGGCCGTGGCCGGCTACGTGAGCGACGTCAGGCGTGGCGGCGACCAGGGC ATGACCACCGAGATCGCCCTACTGATGACCTTCCTCCTCGGCAGCCTCGCCCTCACCGAACAGCGCCTGCTG GCTGCCGCCGGCGGCATCGTGCTGACCCTGCTGCTGAGCCTCAAGGACAAGCTCCACGCCCTGCTGAAGCGC CTGACCGCCGAGGAACTGTCGGGCACCCTCAAGCTGCTGTTCATCTCCGTGGTCCTGCTGCCGGTGCTGCCC AACCAGGGCTACGGTCCCTGGGCGTTCTTCAATCCCTACCTGACCTGGTGGATGGTGGTGCTGATCGCCGCC CTCGGTTTCTCCGCCTACCTGGCCATCCGCCTGATCGGCTCGCGCAAGGGCCTGTTGCTGACCGCGGTGCTC GGCGGCCTGGTGTCCTCCACGGTGATGACCCTGACCCTGGCGCGCCTGCGCGAGCGCATGCCCGACGCCCTG TTGGCGTGCGCCCTGCTGGCGACCTCGGCGCTGATGTTCCCGCGCATCCTCGTCGAGATCGGCGCGATCCAC CCGGCCTTGCTGAAGGAACTGGTCCTGCCATTCGCCGCCACCACCCTCGTCTACCTTGGCGGCACGCTGTTC CACGCCCTGCGCGGCGGCCGCGCCAGCCAGGAGGCGCCCGACGAGCCAGGCCTGCGCAACCCCTTCGAACTG CTCCCGGCCCTGCGCTTCGCCGCCCTGCTGAGCGCGATCCTGCTGTTGGTGGAGGTCGGCCGGCGGCTGTTC GGCGATGCCGGCATCTATGCGGTCGCGCTGCTCTCCGGCCTCGCCGACGTCGACGCGATCACCCTGTCCCTG GCCCGCGCGGCGCAGGGCGAACTCGATCCAGGCGTGGCCAGCCGCGGCATCGCCCTTGCCGCCCTGAGCAAC AGCCTGGTCAAGGCCGGCCTGATCGTGCTGGTGGGCGGCAAGCGGCTGGCCCTGCAAACGCTACCCTTCAGC CTGGCGGGGCTGCTGGTAGGAGCGCTGCTGATCCTGCTGTGA