ViewGene

Locus Name:
GeneID:
Location:

GeneID:1252
TrivialName: PA14_24340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24340
PAO1 Ortholog Locus:PA3078
Sequence Length:1296
Protein Length:431
Start: 2116784
Stop: 2115489
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06466.1|AE004731_14 (AE004731) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 427/431 (99%), Positives = 430/431 (99%)
Sequence:
ATGAAACGCGGCCTGAGCCTGATCCCCATCGTCGGCGGCGGCGTCAGCCTGATCCTCGCCGGGGTGCTGCTG
GTCTACACGCGCATGCTCGGCAACTACGGCGAGACCGGCGCCCTCTACCTGCTCAGCATGATGATGGAAGAG
GAAGGGCTGTACTTCGCCCAGCGCTACCAGGAAGACCCGGCTACGCCGGCGCCGGACAGCTACTACTTCAAG
GGCAGCGTCGGCACCGCGGGGCTGCCGCCGAAACTCAGGGAGATGCTCGACACCCCGCCCTACAAGAGCATC
GGCGCCATGCAACTGCTCGGCAACTGGGACGACGATGACGAAGAGGAGGATGACGACGCGCCCAGCGACGAT
GCCTACGTGGTGGTCCGCCAGCCACTGGCCGACGGCAAGACGCTCTACCTCTACGACAACGACGCCGCCGGC
AGCATCGACACGCCGCTGTCCGACGCCATCATCGACGCCCGCGTCAGGCAGACCTGGATCGTCACCCTATCG
GTCACCCTGCCTTCGCTGGCCGCCGTCGGCCTGCTGGTCTGGTTCATCGTCGCGCCGTTGCGCAAGCTGACG
CGCTGGTCGATGACCCTCGACGACCTCGCCCCGGACAGCCAGCGGCCGCGCTTCAACTACCGCGAACTCAAC
GTGCTGGCGGATACCCTGTGGAACAGCGTGACCCGGATCAAGGACTTCAGCCAGCGCGAGGAGCGCTTCCTG
CGCTACGCCAGCCATGAGCTGCGCACCCCGCTGGCGGTGATCGGCATGAACCTGGAGCTGCTCGACCAACCC
GGCCGCGCGCCCTCCCCGCATGCCTTGCAACGCATCCGCCGCTCGGCGCTGGCCATGCAGCAGATGACCGAA
ACCCTGCTCTGGCTCAGCCGCGAGAGCGGCGAACTGCGCGACGACGGACACATCGAGGTCGGTCGCCTGCTG
GAGGAGCTGCTCGAGGAACAACAGGCGCTGAGCCAGCGCCGCGGCCTGACCTTCCACCTCGACGTGGAGCCA
CACAGCCTGCCGCAGACCCGCGCGCGGATCATCATCGGCAACCTGCTGCGCAACGCCCTGCAGTACAGCGAC
GAGGGCGTGGTGGAAATCGTCGTGCGCGACCGCAGCCTGCTGATCAGCAACCCCATCGGCGCGGCCCAGGGC
ACGGACGAGTCGATGGCGTTCGGTTATGGCCTGGGCCTCGACCTGGTCCAGCGCCTGTGCCAGAAGAGCGGC
TGGCGCCTGCATTACAGCAGCGACGAGCAGCGTTTCCGCTGCGAGCTGCTGTTCCCCGCCACACCGGACTGA
Translation:
MKRGLSLIPIVGGGVSLILAGVLLVYTRMLGNYGETGALYLLSMMMEEEGLYFAQRYQEDPATPAPDSYYFK
GSVGTAGLPPKLREMLDTPPYKSIGAMQLLGNWDDDDEEEDDDAPSDDAYVVVRQPLADGKTLYLYDNDAAG
SIDTPLSDAIIDARVRQTWIVTLSVTLPSLAAVGLLVWFIVAPLRKLTRWSMTLDDLAPDSQRPRFNYRELN
VLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRSALAMQQMTE
TLLWLSRESGELRDDGHIEVGRLLEELLEEQQALSQRRGLTFHLDVEPHSLPQTRARIIIGNLLRNALQYSD
EGVVEIVVRDRSLLISNPIGAAQGTDESMAFGYGLGLDLVQRLCQKSGWRLHYSSDEQRFRCELLFPATPD*
AnnotationID:1261GeneID:1252
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 16:04:48
Gene Name:
Confidence Code:3
GeneProduct:putative sensor histidine kinase
Cell Localization:()
Synonyms:PA3078
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00082,cd00075,smart00388
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN57598.1|AE015895_7 (AE015895) sensor histidine kinase [Shewanella oneidensis MR-1]
          Length = 430

 Score =  112 bits (279), Expect = 6e-24
 Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 34/268 (12%)

>gb|AAM36094.1| (AE011752) two-component system sensor protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 429

 Score =  110 bits (275), Expect = 2e-23
 Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Structural Features:
cd00082, HisKA, His Kinase A (dimerization/phosphoacceptor) domain
CD-Length = 65 residues, 100.0% aligned
Score = 53.3 bits (128), Expect = 5e-08
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues,  99.0% aligned
Score = 42.6 bits (100), Expect = 9e-05

smart00388, HisKA, His Kinase A (phosphoacceptor) domain
CD-Length = 66 residues,  97.0% aligned
Score = 52.1 bits (125), Expect = 1e-07
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Genomic Context:
Comment:
ReferenceID:2507
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19650
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32435
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1252_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1252

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2282 PA3078_tr translation of PA3078 431 99.07 99.76 0 2203.0
74351 gb|AAG06466.1|AE004731_14 (AE004731) probable two-component sensor [Pseudomonas aeruginosa PAO1] 431 99.07 99.76 0 2203.0
GC ORFID: 44254How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3078Glimmer Score:
Start: 2837146Stop: 2838441
Length: 1296
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3078 translation of PA3078Homolog Bit Score 853.0
Other Homologs: t_PA3078 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACGCGGCCTGAGCCTGATCCCCATCGTCGGCGGCGGCGTCAGCCTGATCCTCGCCGGGGTGCTGCTG
GTCTACACGCGCATGCTCGGCAACTACGGCGAGACCGGCGCCCTCTACCTGCTCAGCATGATGATGGAAGAG
GAAGGGCTGTACTTCGCCCAGCGCTACCAGGAAGACCCGGCTACGCCGGCGCCGGACAGCTACTACTTCAAG
GGCAGCGTCGGCACCGCGGGGCTGCCGCCGAAACTCAGGGAGATGCTCGACACCCCGCCCTACAAGAGCATC
GGCGCCATGCAACTGCTCGGCAACTGGGACGACGATGACGAAGAGGAGGATGACGACGCGCCCAGCGACGAT
GCCTACGTGGTGGTCCGCCAGCCACTGGCCGACGGCAAGACGCTCTACCTCTACGACAACGACGCCGCCGGC
AGCATCGACACGCCGCTGTCCGACGCCATCATCGACGCCCGCGTCAGGCAGACCTGGATCGTCACCCTATCG
GTCACCCTGCCTTCGCTGGCCGCCGTCGGCCTGCTGGTCTGGTTCATCGTCGCGCCGTTGCGCAAGCTGACG
CGCTGGTCGATGACCCTCGACGACCTCGCCCCGGACAGCCAGCGGCCGCGCTTCAACTACCGCGAACTCAAC
GTGCTGGCGGATACCCTGTGGAACAGCGTGACCCGGATCAAGGACTTCAGCCAGCGCGAGGAGCGCTTCCTG
CGCTACGCCAGCCATGAGCTGCGCACCCCGCTGGCGGTGATCGGCATGAACCTGGAGCTGCTCGACCAACCC
GGCCGCGCGCCCTCCCCGCATGCCTTGCAACGCATCCGCCGCTCGGCGCTGGCCATGCAGCAGATGACCGAA
ACCCTGCTCTGGCTCAGCCGCGAGAGCGGCGAACTGCGCGACGACGGACACATCGAGGTCGGTCGCCTGCTG
GAGGAGCTGCTCGAGGAACAACAGGCGCTGAGCCAGCGCCGCGGCCTGACCTTCCACCTCGACGTGGAGCCA
CACAGCCTGCCGCAGACCCGCGCGCGGATCATCATCGGCAACCTGCTGCGCAACGCCCTGCAGTACAGCGAC
GAGGGCGTGGTGGAAATCGTCGTGCGCGACCGCAGCCTGCTGATCAGCAACCCCATCGGCGCGGCCCAGGGC
ACGGACGAGTCGATGGCGTTCGGTTATGGCCTGGGCCTCGACCTGGTCCAGCGCCTGTGCCAGAAGAGCGGC
TGGCGCCTGCATTACAGCAGCGACGAGCAGCGTTTCCGCTGCGAGCTGCTGTTCCCCGCCACACCGGACTGA