ViewGene
Locus Name:
GeneID:
Location:

GeneID:1250
TrivialName: PA14_55220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55220
PAO1 Ortholog Locus:PA0703
Sequence Length:1317
Protein Length:438
Start: 4903681
Stop: 4904997
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04092.1|AE004506_2 (AE004506) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 436/438 (99%), Positives = 437/438 (99%)
Sequence:
ATGCGCTCCCCCACCCGTCCCCCGGCGGCCGCCGATCCGGCCAGCCGCCGCAGCGTCTTTGCCGTGGTCCTC
GGCAACGCCGTGGAATTCTTCGACTTCGGGGTCTATGCCACCTTCGCGGTGATGATCGGACGGACTTTCTTC
CCCTCCGACAGCGCCTTCGTCAGCCTGCTCCTGTCGGTCACCGCGTTCGGCGTCGGCTTCGTCATCCGCCCC
CTCGGCGCGATCCTTATCGGCGCCTACGCCGACCGCGCCGGGCGCAAGCCGGCGATGCTCCTTACCCTGTTC
CTGATGGCGCTGGGCACCGGCGGCATCGCGGTGCTCCCCGGCTACGACAGCATCGGCCCGGCCGCGCCGCTG
CTGCTGGTGTTGACCCGCCTGCTGCAAGGCCTGGCCTGGGGCGGCGAGGCCGGGCCGGCGACCACCTACATC
CTCGAGGCGGCACCGCCGCACAAGCGCGGCACCTACGCCTGCTGGCAGGTCGTGGCGCAAGGCATCGCGGCG
GTCGCCGCCGGGCTGATGGGCTACCTGCTCACCCTCTGGCTCGACGAGCGCCAACTGCAGGAATGGGGCTGG
CGGATTCCCTTCGCGGCCGGCCTGCTGGTCCTGCCGATCGGCCTGTACATCCGCCTCAACCTGGCCGAGACC
TTTTCCGGACGCGGCCGCCAGGCCAGCACCCGGAACCTGCTCGGCGAGTTGTTCGGCAATCATCGGCGGGCC
CTGCTGCTCGGCCTGCTGATCCTCTCCGGAAGCACCATCACCCAGTACTTCCTCAACTACATGACCACCTTC
GCCCTTACCGAGCTACACCTGCCGGCGGGCATCGCGATGCTCTCGACGCTGGTCGCCGGCGCCGCACTGGCG
CTCTCGGCGTTGCTCGGCGGCGTGCTCTGCGACCGCTACGGGCGCCGCGCCGTGCTGATCCTGCCGCGCCTG
GCGCTGCTCGCGGTGCTGTTCCCGGCACTGCAGGCAATGACCCGTCACCCCGAGCCGGCAGTCTTCCTCGCC
GTCCTCGCCCTGCTCTCGGCCCTGCATGGCATGAGCGGCGCGGCGCTGATCGTGCTACTGGTAGAAAGCTTC
CCGCGGGCGCTGCGCTCCACCGGTTTTTCCCTGGTCTATGCGACCGGCGTCGCCGCGTTCGGCGGCACCGCG
CAGATCGTGGTGACCTGGCTGATCGGCGTCACCGGCAATCCGCTGTCGCCGCTGGGCTACCTGCTGCTGGCC
AACCTGGTCTGCCTGGTTGGGGCCTGGCTGGCCCGCGAGACCTGGCCGGGTCGCGGGGACATGGGAGGCGCG
CCGCTGGTGCTGCGCGACTGA
Translation:
MRSPTRPPAAADPASRRSVFAVVLGNAVEFFDFGVYATFAVMIGRTFFPSDSAFVSLLLSVTAFGVGFVIRP
LGAILIGAYADRAGRKPAMLLTLFLMALGTGGIAVLPGYDSIGPAAPLLLVLTRLLQGLAWGGEAGPATTYI
LEAAPPHKRGTYACWQVVAQGIAAVAAGLMGYLLTLWLDERQLQEWGWRIPFAAGLLVLPIGLYIRLNLAET
FSGRGRQASTRNLLGELFGNHRRALLLGLLILSGSTITQYFLNYMTTFALTELHLPAGIAMLSTLVAGAALA
LSALLGGVLCDRYGRRAVLILPRLALLAVLFPALQAMTRHPEPAVFLAVLALLSALHGMSGAALIVLLVESF
PRALRSTGFSLVYATGVAAFGGTAQIVVTWLIGVTGNPLSPLGYLLLANLVCLVGAWLARETWPGRGDMGGA
PLVLRD*
AnnotationID:1259GeneID:1250
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:24
Gene Name:
Confidence Code:3
GeneProduct:probable MFS transporter
Cell Localization:(4) Inner membrane protein
Synonyms:PA0703
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0477?






   
Genomic Context:






   
Comment:


















    ReferenceID:2503




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19646




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1250
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2279
                           PA0703_tr
                           translation of PA0703
                           438
                           99.54
                           99.77
                           0
                           2203.0
     

     
     
74330
                           gb|AAG04092.1|AE004506_2
                           (AE004506) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           438
                           99.54
                           99.77
                           0
                           2203.0
     

     
     
74337
                           emb|CAD16769.1|
                           (AL646073) PROBABLE TRANSPORTER TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           447
                           39.14
                           54.58
                           23
                           743.0
     

     
     
74336
                           gb|AAG07731.1|AE004850_9
                           (AE004850) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           456
                           39.03
                           53.72
                           35
                           745.0
     

     
     
2280
                           PA4343_tr
                           translation of PA4343
                           456
                           39.03
                           53.72
                           35
                           745.0
     

     






      

          
GC ORFID: 44252How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0703Glimmer Score: 

          
Start: 50226Stop: 48910

          
Length: 1317


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0703 translation of PA0703Homolog Bit Score 853.0

          
Other Homologs:  t_PA4343 (ORF: BLASTX 292.0), t_PA0703 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTCCCCCACCCGTCCCCCGGCGGCCGCCGATCCGGCCAGCCGCCGCAGCGTCTTTGCCGTGGTCCTC 
GGCAACGCCGTGGAATTCTTCGACTTCGGGGTCTATGCCACCTTCGCGGTGATGATCGGACGGACTTTCTTC 
CCCTCCGACAGCGCCTTCGTCAGCCTGCTCCTGTCGGTCACCGCGTTCGGCGTCGGCTTCGTCATCCGCCCC 
CTCGGCGCGATCCTTATCGGCGCCTACGCCGACCGCGCCGGGCGCAAGCCGGCGATGCTCCTTACCCTGTTC 
CTGATGGCGCTGGGCACCGGCGGCATCGCGGTGCTCCCCGGCTACGACAGCATCGGCCCGGCCGCGCCGCTG 
CTGCTGGTGTTGACCCGCCTGCTGCAAGGCCTGGCCTGGGGCGGCGAGGCCGGGCCGGCGACCACCTACATC 
CTCGAGGCGGCACCGCCGCACAAGCGCGGCACCTACGCCTGCTGGCAGGTCGTGGCGCAAGGCATCGCGGCG 
GTCGCCGCCGGGCTGATGGGCTACCTGCTCACCCTCTGGCTCGACGAGCGCCAACTGCAGGAATGGGGCTGG 
CGGATTCCCTTCGCGGCCGGCCTGCTGGTCCTGCCGATCGGCCTGTACATCCGCCTCAACCTGGCCGAGACC 
TTTTCCGGACGCGGCCGCCAGGCCAGCACCCGGAACCTGCTCGGCGAGTTGTTCGGCAATCATCGGCGGGCC 
CTGCTGCTCGGCCTGCTGATCCTCTCCGGAAGCACCATCACCCAGTACTTCCTCAACTACATGACCACCTTC 
GCCCTTACCGAGCTACACCTGCCGGCGGGCATCGCGATGCTCTCGACGCTGGTCGCCGGCGCCGCACTGGCG 
CTCTCGGCGTTGCTCGGCGGCGTGCTCTGCGACCGCTACGGGCGCCGCGCCGTGCTGATCCTGCCGCGCCTG 
GCGCTGCTCGCGGTGCTGTTCCCGGCACTGCAGGCAATGACCCGTCACCCCGAGCCGGCAGTCTTCCTCGCC 
GTCCTCGCCCTGCTCTCGGCCCTGCATGGCATGAGCGGCGCGGCGCTGATCGTGCTACTGGTAGAAAGCTTC 
CCGCGGGCGCTGCGCTCCACCGGTTTTTCCCTGGTCTATGCGACCGGCGTCGCCGCGTTCGGCGGCACCGCG 
CAGATCGTGGTGACCTGGCTGATCGGCGTCACCGGCAATCCGCTGTCGCCGCTGGGCTACCTGCTGCTGGCC 
AACCTGGTCTGCCTGGTTGGGGCCTGGCTGGCCCGCGAGACCTGGCCGGGTCGCGGGGACATGGGAGGCGCG 
CCGCTGGTGCTGCGCGACTGA