ViewGene

Locus Name:
GeneID:
Location:

GeneID:1249
TrivialName: PA14_66510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66510
PAO1 Ortholog Locus:PA5030
Sequence Length:1317
Protein Length:438
Start: 5931759
Stop: 5933075
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08415.1|AE004916_4 (AE004916) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 438/438 (100%), Positives = 438/438 (100%)
Sequence:
GTGAGCAATCCGCAAGTCCGGCCACAGGCCGAAGAAGAACCCGCGTTAATCGAGGCGGCCCGCGAAGCAGCC
AACGAGGTGCTGGAAGCCGCCACCGAAGTCGAACGCTATATCGAAAAAGGCACCCCGCAGTTCATGCGCACC
TCCCTGGCGCTGTTCTCCGGCGGTTTCGCCACCTTTGCCCTGCTCTACTGCATCCAGCCGATGATGCCGGTG
CTGTCCAAGGCGTTTTCCATCAGCGCCGCGGAAAGCAGCCTGGCATTGTCCGTCGCCACCGCCATGCTCGCC
CTTGGCCTGCTGGTCACCGGCCCGATCTCCGACGCGATCGGCCGCAAGCCGGTGATGGTCGTCTCGCTGCTG
GCCGCCGCGCTGTTCACCCTCGGCAGCGCGGTGATGCCCACCTGGCATGGCGTGCTGCTGATGCGCGCGCTG
GTCGGGCTGTCCTTGAGCGGCCTGGCCGCGGTGGCGATGACCTATCTCAGCGAAGAGATCCATCCGCAGCAC
ATCGGCTTGTCGATGGGCCTGTACATCGGCGGCAACGCCATCGGCGGGATGAGCGGACGCCTGATCAGCGGC
GTCCTGGTCGATTTCATCTCCTGGCATGCCGCACTGGCGGTCCTCGGCGGCCTGGCCCTGGTCGCCGCGCTG
GTGTTCTGGCGCGTGCTGCCCGAATCGAAACACTTCCGGCCGGCACCGCTGAAGCCGGCGACCCTGCTCAAC
GGCTACCGCTTGCACTTCCGCGACGCCGGACTGCCCTGGCTGTTCCTGATCGGCTTCCTGCTGATGGGCAGC
TTCGTCACCCTGTTCAACTACATCGGCTACCGCCTGCTGGCCGAGCCCTACCACATGAGCCAGGCGGTGGTC
GGCGTGCTCTCGGTGGTTTACCTCTCGGGCATCTACAGCTCGGCCTGGGTCGGTTCGCTGGCCGACAAGCTG
GGGCGACGCAAGGTGCTCTGGGCGGTCATCCTGCTGATGCTCGGCGGCCTGCTGCTGACCCTGTTCGAGCCG
ATCCCGCTGATGCTCGCCGGCCTGCTGCTGTTCACCTTCGGCTTCTTCGGCGCGCACTCGGTGGCGAGCAGT
TGGATCGGGCGCCGCGCCCTGCGCGCCAAGGGCCAGGCCTCGTCGCTCTATCTGTTCAGCTACTACGTCGGC
TCGAGCCTGGCCGGCACCCTCGGCGGGGTGTTCTGGCATTACTACGGCTGGAACGGCATCGGGCTGTTCATC
GGCTCGCTGCTGGTGGTCGCGGTATTGGTCTCGCTGCACCTGGCGCGCCTGCCGGCCCTGCCTGGCAACACC
CTGGCGCAGCCCGCCCACTGA
Translation:
MSNPQVRPQAEEEPALIEAAREAANEVLEAATEVERYIEKGTPQFMRTSLALFSGGFATFALLYCIQPMMPV
LSKAFSISAAESSLALSVATAMLALGLLVTGPISDAIGRKPVMVVSLLAAALFTLGSAVMPTWHGVLLMRAL
VGLSLSGLAAVAMTYLSEEIHPQHIGLSMGLYIGGNAIGGMSGRLISGVLVDFISWHAALAVLGGLALVAAL
VFWRVLPESKHFRPAPLKPATLLNGYRLHFRDAGLPWLFLIGFLLMGSFVTLFNYIGYRLLAEPYHMSQAVV
GVLSVVYLSGIYSSAWVGSLADKLGRRKVLWAVILLMLGGLLLTLFEPIPLMLAGLLLFTFGFFGAHSVASS
WIGRRALRAKGQASSLYLFSYYVGSSLAGTLGGVFWHYYGWNGIGLFIGSLLVVAVLVSLHLARLPALPGNT
LAQPAH*
AnnotationID:1258GeneID:1249
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 14:02:39
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:ynfM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70637.1|AE016707_7 (AE016793) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 425

 Score =  618 bits (1593), Expect = e-176
 Identities = 302/392 (77%), Positives = 352/392 (89%)

>gb|AAO58539.1| (AE016874) major facilitator superfamily protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 418

 Score =  599 bits (1544), Expect = e-170
 Identities = 289/394 (73%), Positives = 351/394 (89%)

>gb|AAC74668.1| (AE000255) putative transport protein [Escherichia coli K12]
          Length = 417

 Score =  525 bits (1352), Expect = e-148
 Identities = 255/396 (64%), Positives = 320/396 (80%)

Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  95.2% aligned
Score =  119 bits (301), Expect = 5e-28
Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 5/379 (1%)

Genomic Context:
Comment:
ReferenceID:14317
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19644
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35078
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1249_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1249

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2278 PA5030_tr translation of PA5030 438 99.99 99.99 0 2207.0
74300 gb|AAG08415.1|AE004916_4 (AE004916) probable MFS transporter [Pseudomonas aeruginosa PAO1] 438 99.77 99.99 0 2204.0
74301 gb|AAN70637.1|AE016707_7 (AE016793) major facilitator family transporter [Pseudomonas putida KT2440] 444 69.59 81.53 25 1583.0
74302 gb|AAO58539.1| (AE016874) major facilitator superfamily protein [Pseudomonas syringae pv. tomato str. DC3000] 438 67.35 82.42 20 1544.0
74303 gb|AAC74668.1| (AE000255) putative transport protein [Escherichia coli K12] 439 58.99 74.71 23 1343.0
GC ORFID: 44251How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5030Glimmer Score:
Start: 5195442Stop: 5196758
Length: 1317
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5030 translation of PA5030Homolog Bit Score 854.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3767 (ORF: BLASTX 595.0), t_PA5030 (ORF: GLIMMER)
GC ORF Sequence
GTGAGCAATCCGCAAGTCCGGCCACAGGCCGAAGAAGAACCCGCGTTAATCGAGGCGGCCCGCGAAGCAGCC
AACGAGGTGCTGGAAGCCGCCACCGAAGTCGAACGCTATATCGAAAAAGGCACCCCGCAGTTCATGCGCACC
TCCCTGGCGCTGTTCTCCGGCGGTTTCGCCACCTTTGCCCTGCTCTACTGCATCCAGCCGATGATGCCGGTG
CTGTCCAAGGCGTTTTCCATCAGCGCCGCGGAAAGCAGCCTGGCATTGTCCGTCGCCACCGCCATGCTCGCC
CTTGGCCTGCTGGTCACCGGCCCGATCTCCGACGCGATCGGCCGCAAGCCGGTGATGGTCGTCTCGCTGCTG
GCCGCCGCGCTGTTCACCCTCGGCAGCGCGGTGATGCCCACCTGGCATGGCGTGCTGCTGATGCGCGCGCTG
GTCGGGCTGTCCTTGAGCGGCCTGGCCGCGGTGGCGATGACCTATCTCAGCGAAGAGATCCATCCGCAGCAC
ATCGGCTTGTCGATGGGCCTGTACATCGGCGGCAACGCCATCGGCGGGATGAGCGGACGCCTGATCAGCGGC
GTCCTGGTCGATTTCATCTCCTGGCATGCCGCACTGGCGGTCCTCGGCGGCCTGGCCCTGGTCGCCGCGCTG
GTGTTCTGGCGCGTGCTGCCCGAATCGAAACACTTCCGGCCGGCACCGCTGAAGCCGGCGACCCTGCTCAAC
GGCTACCGCTTGCACTTCCGCGACGCCGGACTGCCCTGGCTGTTCCTGATCGGCTTCCTGCTGATGGGCAGC
TTCGTCACCCTGTTCAACTACATCGGCTACCGCCTGCTGGCCGAGCCCTACCACATGAGCCAGGCGGTGGTC
GGCGTGCTCTCGGTGGTTTACCTCTCGGGCATCTACAGCTCGGCCTGGGTCGGTTCGCTGGCCGACAAGCTG
GGGCGACGCAAGGTGCTCTGGGCGGTCATCCTGCTGATGCTCGGCGGCCTGCTGCTGACCCTGTTCGAGCCG
ATCCCGCTGATGCTCGCCGGCCTGCTGCTGTTCACCTTCGGCTTCTTCGGCGCGCACTCGGTGGCGAGCAGT
TGGATCGGGCGCCGCGCCCTGCGCGCCAAGGGCCAGGCCTCGTCGCTCTATCTGTTCAGCTACTACGTCGGC
TCGAGCCTGGCCGGCACCCTCGGCGGGGTGTTCTGGCATTACTACGGCTGGAACGGCATCGGGCTGTTCATC
GGCTCGCTGCTGGTGGTCGCGGTATTGGTCTCGCTGCACCTGGCGCGCCTGCCGGCCCTGCCTGGCAACACC
CTGGCGCAGCCCGCCCACTGA