ViewGene
Locus Name:
GeneID:
Location:

GeneID:1248
TrivialName: PA14_24790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24790
PAO1 Ortholog Locus:PA3038
Sequence Length:1266
Protein Length:421
Start: 2168673
Stop: 2167408
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06426.1|AE004728_12 (AE004728) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 421/421 (100%), Positives = 421/421 (100%)
Sequence:
ATGAGCATGACCCCGATCGCCCGTGCCGTGGCTTTTGCCGCGCTGGGTTCCAGCATTACCGTCCCAACCCTG
GCCCATGCCGAGTTCATCAAGGACAGCAAGGCCAGCATCGAACTCCGCAACTTCTACTTCAACCGTGATTTC
CGCCAGGAAGGCGCCAGCCAGTCCAAGGCCGAGGAATGGGCCCAGGGCTTCCTCCTGCGCTACGAGTCCGGC
TACACCGAGGGCACCATCGGTTTCGGCGTCGACGCCATCGGCCTGCTCGGGGTGAAGCTCGACTCCAGCCCC
GACCGCAGCGGCACCGGCCTGCTCAAGCGCGACCGCGAGACCGGCCGCGCCCAGGACGACTATGGCGAGGCA
GGGATCACCGCCAAGCTGCGGGCGTCGAAGAGCACCCTGAAGATCGGCACCCTGACCCCCAAGCTGCCGGTG
ATCATGCCCAACGACAGCCGCCTGCTGCCACAGACCTTCCAGGGCGGCGCGCTGAACTCCATGGAGATCGAC
GGCCTGACCCTCGACGCCGGGCGCCTGAAGAAGGTCAACCAGCGCGACTCCTCGGACAACGAGGACATGACC
ATCACCGGTGGCGGCAAGCGCAACATCGTGGTCCGTTCCGGGCTGACTTCGGACAAGTTCGACTTCGCCGGC
GGCAGCTACAAGTGGACCGACAACCTCAGCACCAGCTACCACTACGGCAAGCTCGACAACTTCTACAAGCAG
CATTACCTCGGCCTGGTGCACACCCTGCCGATCGCCGACAAGCAGTCGCTGAAATCCGACATCCGCTGGGCG
CGCTCCACCGACGACGGCTCCAGCAACGTCGACAACAAGGCGCTCAACGCCATGTTCACCTACAGCCTCGGC
TACCACGCCTTCGGCGTCGGCTACCAGAAGATGAGCGGCGACACCGGCTTCGCCTACATCAACGGCGCCGAC
CCCTACCTGGTGAACTTCATCCAGATCGGCGACTTCGCCAACAAGGACGAGAAATCCTGGCAGGCGCGCTAC
GACTACAACTTCGCAGGCGTCGGCATTCCCGGCCTGACCTTCATGACCCGCTACGTCAAGGGCGACAACATC
GACCTGCTGACCACCTCGGGCGAAGGCAAGGAATGGGAACGCGACATGGACATCGCCTACGTGTTCCAGAGC
GGCCCGTTGAAGAACCTCGGGGTGAAGTGGCGCAACGCGACCATGCGCACCAACTACACCAACGACTACGAC
GAAAATCGCCTGATCGTCAGCTACACGCTGCCGCTCTGGTAA
Translation:
MSMTPIARAVAFAALGSSITVPTLAHAEFIKDSKASIELRNFYFNRDFRQEGASQSKAEEWAQGFLLRYESG
YTEGTIGFGVDAIGLLGVKLDSSPDRSGTGLLKRDRETGRAQDDYGEAGITAKLRASKSTLKIGTLTPKLPV
IMPNDSRLLPQTFQGGALNSMEIDGLTLDAGRLKKVNQRDSSDNEDMTITGGGKRNIVVRSGLTSDKFDFAG
GSYKWTDNLSTSYHYGKLDNFYKQHYLGLVHTLPIADKQSLKSDIRWARSTDDGSSNVDNKALNAMFTYSLG
YHAFGVGYQKMSGDTGFAYINGADPYLVNFIQIGDFANKDEKSWQARYDYNFAGVGIPGLTFMTRYVKGDNI
DLLTTSGEGKEWERDMDIAYVFQSGPLKNLGVKWRNATMRTNYTNDYDENRLIVSYTLPLW*
AnnotationID:1257GeneID:1248
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:02
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane porin
Cell Localization:()
Synonyms:opdQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68878.1|AE016519_11 (AE016786) phenylacetic acid-specific porin [Pseudomonas putida
           KT2440]
          Length = 417

 Score =  408 bits (1049), Expect = e-113
 Identities = 209/414 (50%), Positives = 273/414 (65%), Gaps = 17/414 (4%)

>gb|AAO55855.1| (AE016864) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 418

 Score =  331 bits (849), Expect = 4e-90
 Identities = 179/419 (42%), Positives = 258/419 (61%), Gaps = 18/419 (4%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  92.2% aligned
Score =  308 bits (790), Expect = 8e-85
Identities = 165/418 (39%), Positives = 219/418 (52%), Gaps = 47/418 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2499




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19642




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36012




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1248_cd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1248
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2266
                           PA3038_tr
                           translation of PA3038
                           421
                           99.99
                           99.99
                           0
                           2206.0
     

     
     
74258
                           gb|AAG06426.1|AE004728_12
                           (AE004728) probable porin [Pseudomonas aeruginosa PAO1]
                           421
                           99.99
                           99.99
                           0
                           2206.0
     

     
     
74259
                           gb|AAG04414.1|AE004535_1
                           (AE004535) probable porin [Pseudomonas aeruginosa PAO1]
                           421
                           65.55
                           79.33
                           5
                           1490.0
     

     
     
2267
                           PA1025_tr
                           translation of PA1025
                           421
                           65.55
                           79.33
                           5
                           1490.0
     

     
     
2269
                           PA2113_tr
                           translation of PA2113
                           422
                           55.21
                           69.66
                           14
                           1202.0
     

     






      

          
GC ORFID: 44250How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3038Glimmer Score: 

          
Start: 2785255Stop: 2786520

          
Length: 1266


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3038 translation of PA3038Homolog Bit Score 854.0

          
Other Homologs:  t_PA1025 (ORF: BLASTX 577.0), t_PA0755 (ORF: BLASTX 493.0), t_PA2113 (ORF: BLASTX 462.0), t_PA4137 (ORF: BLASTX 410.0), t_PA2213 (ORF: BLASTX 390.0), t_PA3588 (ORF: BLASTX 389.0), t_PA0291 (ORF: BLASTX 357.0), t_PA4179 (ORF: BLASTX 336.0), psyr_15may02_Scaffold1_revised_gene342 (ORF: BLASTX 332.0), psyr_15may02_Scaffold3_revised_gene5124 (ORF: BLASTX 325.0), t_PA4898 (ORF: BLASTX 314.0), psyr_15may02_Scaffold1_revised_gene1320 (ORF: BLASTX 313.0), t_PA0240 (ORF: BLASTX 312.0), t_PA0958 (ORF: BLASTX 283.0), t_PA3038 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATGACCCCGATCGCCCGTGCCGTGGCTTTTGCCGCGCTGGGTTCCAGCATTACCGTCCCAACCCTG 
GCCCATGCCGAGTTCATCAAGGACAGCAAGGCCAGCATCGAACTCCGCAACTTCTACTTCAACCGTGATTTC 
CGCCAGGAAGGCGCCAGCCAGTCCAAGGCCGAGGAATGGGCCCAGGGCTTCCTCCTGCGCTACGAGTCCGGC 
TACACCGAGGGCACCATCGGTTTCGGCGTCGACGCCATCGGCCTGCTCGGGGTGAAGCTCGACTCCAGCCCC 
GACCGCAGCGGCACCGGCCTGCTCAAGCGCGACCGCGAGACCGGCCGCGCCCAGGACGACTATGGCGAGGCA 
GGGATCACCGCCAAGCTGCGGGCGTCGAAGAGCACCCTGAAGATCGGCACCCTGACCCCCAAGCTGCCGGTG 
ATCATGCCCAACGACAGCCGCCTGCTGCCACAGACCTTCCAGGGCGGCGCGCTGAACTCCATGGAGATCGAC 
GGCCTGACCCTCGACGCCGGGCGCCTGAAGAAGGTCAACCAGCGCGACTCCTCGGACAACGAGGACATGACC 
ATCACCGGTGGCGGCAAGCGCAACATCGTGGTCCGTTCCGGGCTGACTTCGGACAAGTTCGACTTCGCCGGC 
GGCAGCTACAAGTGGACCGACAACCTCAGCACCAGCTACCACTACGGCAAGCTCGACAACTTCTACAAGCAG 
CATTACCTCGGCCTGGTGCACACCCTGCCGATCGCCGACAAGCAGTCGCTGAAATCCGACATCCGCTGGGCG 
CGCTCCACCGACGACGGCTCCAGCAACGTCGACAACAAGGCGCTCAACGCCATGTTCACCTACAGCCTCGGC 
TACCACGCCTTCGGCGTCGGCTACCAGAAGATGAGCGGCGACACCGGCTTCGCCTACATCAACGGCGCCGAC 
CCCTACCTGGTGAACTTCATCCAGATCGGCGACTTCGCCAACAAGGACGAGAAATCCTGGCAGGCGCGCTAC 
GACTACAACTTCGCAGGCGTCGGCATTCCCGGCCTGACCTTCATGACCCGCTACGTCAAGGGCGACAACATC 
GACCTGCTGACCACCTCGGGCGAAGGCAAGGAATGGGAACGCGACATGGACATCGCCTACGTGTTCCAGAGC 
GGCCCGTTGAAGAACCTCGGGGTGAAGTGGCGCAACGCGACCATGCGCACCAACTACACCAACGACTACGAC 
GAAAATCGCCTGATCGTCAGCTACACGCTGCCGCTCTGGTAA