ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1245

TrivialName: PA14_53770

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_53770

PAO1 Ortholog Locus: PA0812

Sequence Length: 1296

Protein Length: 431

Start: 4766533

Stop: 4767828

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04201.1|AE004516_6 (AE004516) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 428/431 (99%), Positives = 429/431 (99%)

Sequence:

ATGACCGGATCCCGGAAAACCCTGATTCTCGGATGCGCCTCCACCGGCGCCAAGTTCACCCCGCGCAACCAC
GCCGCCACCGGCGACCGCCTGCTCGACAGCATCTGCACCGGCGCCACCATCCGCACCGCCCCCGGCGAACTG
CTGGACGAAGCGCGCCAGCTCTACGAGATGGGTTGCCGCTACTACCACTATCATGCGCGCAACCCGCTGACC
CAGGAACAGACCACCGACAACGACATCTACCAGGCGGTCAGCCGCGCCCTGCAGAACCGCTTCCCCGACCTG
ATGCTGAGCTTCGGCGCCAGCCGCAACGGCAGCGAGGTGCAGGAGAACATCCGCCGCTTCGGCGAGTGGGAG
CGGGTCAGCCACTGCGCCATCCCGCTGCACCTGGGCGGTGCGCACTTCGTGACGATCCAGGCGGCCATCGAA
CTGCAGGTGATCTGCGAGCTGGAGAAGCAAAGGCGCAAGCTCGACCTCGACTATGCCTCCAGCCCGGCTTTC
CTCGCCGACCTGCGCGACTACCAGCCGTCGACGGCGCTGGAAAGGGCCGAGTTGCAGACCCACTCCACCAGC
AAGGGCGCCGACTACGGGGTGACCTCGCCGATGACCCAGTTCCAGGTCTACCGCAACGCCATCCAGGCGCGC
CAGAAGCTCGGCCTGTTCCACGAGGTGGAGTGGGTGCAGCATGTGCGCAGCTACGCCATGACCCGTTTCGCC
GTGGAGCACCCGCGCCTGCGCCTGGGCGGTTCCGGCCAGTTGAACGTGATCCTGCTGTTTGGCTTCTCGCCA
CGCCTGCCGTTCCCGGAGACCTACCAGCAGTTCCGCGCGGTGATCGAGAGCGCCAAGAGCCTGGAGTACGAC
ATCGGCGAACCCGGCGTGCGCAAGCGCAAGGTCAGCATCACGGTCGGCGCGGCGGTGATGCCGCAGCATGCC
GCGCAGCACTTCCGGCCGCTCGACGTCGGTCCTCGCGCCGGCACCCCGCTCTGCGCGGTGCGCCGGCTGGCC
GCCTATGCCGCGCAGGCGGACAGCCAGGTCGATGTGCTGCGGGTCGGCATGGAGGACACGCCCTACGCGGTG
GACGATGACGGCCGGGTGACGCTCAGCGACAACTGCCAACTGCTGCGCCAGGCCCTCGACGAACTGCGCGCC
AACGGCGCCGAGGCCGAGCTCGACGGCGAACGGATCTTCCAGCGCATGGGCATGGAACGCACCCTCGGCGAA
TACCTGTCGCTGCAGCGCCTGCATCCGCTCGGCGAAGCCAACTTCACCCTCGCACGGGAGTTCGTCCAGTGA

Translation:

MTGSRKTLILGCASTGAKFTPRNHAATGDRLLDSICTGATIRTAPGELLDEARQLYEMGCRYYHYHARNPLT
QEQTTDNDIYQAVSRALQNRFPDLMLSFGASRNGSEVQENIRRFGEWERVSHCAIPLHLGGAHFVTIQAAIE
LQVICELEKQRRKLDLDYASSPAFLADLRDYQPSTALERAELQTHSTSKGADYGVTSPMTQFQVYRNAIQAR
QKLGLFHEVEWVQHVRSYAMTRFAVEHPRLRLGGSGQLNVILLFGFSPRLPFPETYQQFRAVIESAKSLEYD
IGEPGVRKRKVSITVGAAVMPQHAAQHFRPLDVGPRAGTPLCAVRRLAAYAAQADSQVDVLRVGMEDTPYAV
DDDGRVTLSDNCQLLRQALDELRANGAEAELDGERIFQRMGMERTLGEYLSLQRLHPLGEANFTLAREFVQ*

AnnotationID:1254 GeneID:1245

AnnotatorUID: danlee

Modification Date/Time: 2004-04-20 16:04:10

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0812

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2493

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19636

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1245

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2263 PA0812_tr translation of PA0812 431 99.30 99.53 0 2210.0

74120 gb|AAG04201.1|AE004516_6 (AE004516) hypothetical protein PA0812 [Pseudomonas aeruginosa PAO1] 431 99.30 99.53 0 2210.0

GC ORFID: `44247`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0812`	Glimmer Score:
Start: `187374`	Stop: `186079`
Length: `1296`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0812 translation of PA0812`	Homolog Bit Score `855.0`
Other Homologs: `t_PA0812 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCGGATCCCGGAAAACCCTGATTCTCGGATGCGCCTCCACCGGCGCCAAGTTCACCCCGCGCAACCAC GCCGCCACCGGCGACCGCCTGCTCGACAGCATCTGCACCGGCGCCACCATCCGCACCGCCCCCGGCGAACTG CTGGACGAAGCGCGCCAGCTCTACGAGATGGGTTGCCGCTACTACCACTATCATGCGCGCAACCCGCTGACC CAGGAACAGACCACCGACAACGACATCTACCAGGCGGTCAGCCGCGCCCTGCAGAACCGCTTCCCCGACCTG ATGCTGAGCTTCGGCGCCAGCCGCAACGGCAGCGAGGTGCAGGAGAACATCCGCCGCTTCGGCGAGTGGGAG CGGGTCAGCCACTGCGCCATCCCGCTGCACCTGGGCGGTGCGCACTTCGTGACGATCCAGGCGGCCATCGAA CTGCAGGTGATCTGCGAGCTGGAGAAGCAAAGGCGCAAGCTCGACCTCGACTATGCCTCCAGCCCGGCTTTC CTCGCCGACCTGCGCGACTACCAGCCGTCGACGGCGCTGGAAAGGGCCGAGTTGCAGACCCACTCCACCAGC AAGGGCGCCGACTACGGGGTGACCTCGCCGATGACCCAGTTCCAGGTCTACCGCAACGCCATCCAGGCGCGC CAGAAGCTCGGCCTGTTCCACGAGGTGGAGTGGGTGCAGCATGTGCGCAGCTACGCCATGACCCGTTTCGCC GTGGAGCACCCGCGCCTGCGCCTGGGCGGTTCCGGCCAGTTGAACGTGATCCTGCTGTTTGGCTTCTCGCCA CGCCTGCCGTTCCCGGAGACCTACCAGCAGTTCCGCGCGGTGATCGAGAGCGCCAAGAGCCTGGAGTACGAC ATCGGCGAACCCGGCGTGCGCAAGCGCAAGGTCAGCATCACGGTCGGCGCGGCGGTGATGCCGCAGCATGCC GCGCAGCACTTCCGGCCGCTCGACGTCGGTCCTCGCGCCGGCACCCCGCTCTGCGCGGTGCGCCGGCTGGCC GCCTATGCCGCGCAGGCGGACAGCCAGGTCGATGTGCTGCGGGTCGGCATGGAGGACACGCCCTACGCGGTG GACGATGACGGCCGGGTGACGCTCAGCGACAACTGCCAACTGCTGCGCCAGGCCCTCGACGAACTGCGCGCC AACGGCGCCGAGGCCGAGCTCGACGGCGAACGGATCTTCCAGCGCATGGGCATGGAACGCACCCTCGGCGAA TACCTGTCGCTGCAGCGCCTGCATCCGCTCGGCGAAGCCAACTTCACCCTCGCACGGGAGTTCGTCCAGTGA