ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1244

TrivialName: PA14_41420

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_41420

PAO1 Ortholog Locus: PA1791

Sequence Length: 1332

Protein Length: 443

Start: 3693088

Stop: 3694419

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05180.1|AE004605_2 (AE004605) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 443/443 (100%), Positives = 443/443 (100%)

Sequence:

GTGATCATCTCGAAGGGAAACCTGATCAAGTTCGTCGCCGCCCCCCTCGGCGTGCTCGCCCTCGGCTTCGGC
CTGTTCAACGGCGTGTTCTTCTATAACGAAGCCGGCTTCATGACCCACGTAAGGACCATCTTCGGCGACGAG
AAGATCGTCGATGACGTCGGCTACGCGACCAAGTGGTTCGGTCGCGCCACCACCTGGAAGAAGGCCATCAGC
GTGCAGTCCGTGCTGGTCATGGACGATAACGACACCAATCCGGACAACGACGGCCTCGGCGCCACCATCGAG
GCTTTCCCGATCGTGTTCCTCGGCAACGTCGACGCCAAGGTCGAATCTTCCGCGCGCTTTCGCCTGCCCGGC
GGCGAGCCGTTCCTGAAGATGGCCCAGGAATACCGCAACCCGGACAATTTCATCCGCACCGCACTGGTGCCG
GCGATCAAGGAAACCCTCCAGGCCACCGCTTCGCTGATGAGCGCCGACGACTACTACGCCGGAGCCCGCAGC
GAATTCGCCGCCGAGTTCGAGAACCAGCTCAACGACGGCCTGTACCTGATCAAGCGCAAGGAAGTCCGCGGG
CCGCGCGGCGCCATTCCGCACCAGACCGCGATCCTCCAGGCCGGCACTGAGCAGGGAGCGTTCGGCGACAAC
AACGCCAGCCAGTTCGTCACCGAGAAGGTCACTGATGCCAAGGGCATCCCGGTACGCAAGCAACAGCAGTTC
CGCAAGTTCGGCGTCGAGGTGGTGGAAGCGCGGATCACCAACGTCGATCCCAACCCGCAGTACAAGCAGCGC
ATGGTCAAGGTCCAGCAGGCGCTCGCCGAGCTGGCGGTGGCGCGGCAGAACCGCCTGAAGGAAGAAGAGGAA
AAGCTGCTGGTCACCGCCCGCGGCGAGAAGGAAGTCGAGGCCAAGCGCCAGGAAACCCTGCGCGACCAGATC
GAACGCACCACCCAGGCGGAAACCGACAAGCAATTGGCGGTGATCAACGCCGAGCGCGAGAAGCAGCGCGCC
GAGATCGAGAAGCAGACCGCCGAACTGCTGCGCGACAAGGCCACGGTGACCGCCCAGGCCACCAAGATCACC
GCCGACGCCGAGGCCTACGCCCGCGAAGCGGTGATCAAGGCGGACGGCGCGTTGCAGCCGAAGCTCGACGCG
CTGATCGCGATCAACAAGGTCTGGGCCGAAGCCGCCGCCCAGGCCCCCGTCCCCAGCGTAATGATGGGCGCC
GGCGCCAACGGCGCGGCGAGCCGCCAGGACGAGATCGGCCAGCTGATGGGCGTTCTGGCGACCAAGGCCGCC
CGCGACCTGGCCCTCGACCTCAAGGTCAAGGACTGA

Translation:

MIISKGNLIKFVAAPLGVLALGFGLFNGVFFYNEAGFMTHVRTIFGDEKIVDDVGYATKWFGRATTWKKAIS
VQSVLVMDDNDTNPDNDGLGATIEAFPIVFLGNVDAKVESSARFRLPGGEPFLKMAQEYRNPDNFIRTALVP
AIKETLQATASLMSADDYYAGARSEFAAEFENQLNDGLYLIKRKEVRGPRGAIPHQTAILQAGTEQGAFGDN
NASQFVTEKVTDAKGIPVRKQQQFRKFGVEVVEARITNVDPNPQYKQRMVKVQQALAELAVARQNRLKEEEE
KLLVTARGEKEVEAKRQETLRDQIERTTQAETDKQLAVINAEREKQRAEIEKQTAELLRDKATVTAQATKIT
ADAEAYAREAVIKADGALQPKLDALIAINKVWAEAAAQAPVPSVMMGAGANGAASRQDEIGQLMGVLATKAA
RDLALDLKVKD*

AnnotationID:1253 GeneID:1244

AnnotatorUID: diggins

Modification Date/Time: 2005-03-01 12:12:31

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1791

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:14313

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19634

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37133

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1244_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1244

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2262 PA1791_tr translation of PA1791 443 99.99 99.99 0 2212.0

74119 gb|AAG05180.1|AE004605_2 (AE004605) hypothetical protein PA1791 [Pseudomonas aeruginosa PAO1] 443 99.77 99.99 0 2209.0

GC ORFID: `44246`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1791`	Glimmer Score:
Start: `1260821`	Stop: `1259490`
Length: `1332`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1791 translation of PA1791`	Homolog Bit Score `856.0`
Other Homologs: `t_PA1791 (ORF: GLIMMER)`
GC ORF Sequence
GTGATCATCTCGAAGGGAAACCTGATCAAGTTCGTCGCCGCCCCCCTCGGCGTGCTCGCCCTCGGCTTCGGC CTGTTCAACGGCGTGTTCTTCTATAACGAAGCCGGCTTCATGACCCACGTAAGGACCATCTTCGGCGACGAG AAGATCGTCGATGACGTCGGCTACGCGACCAAGTGGTTCGGTCGCGCCACCACCTGGAAGAAGGCCATCAGC GTGCAGTCCGTGCTGGTCATGGACGATAACGACACCAATCCGGACAACGACGGCCTCGGCGCCACCATCGAG GCTTTCCCGATCGTGTTCCTCGGCAACGTCGACGCCAAGGTCGAATCTTCCGCGCGCTTTCGCCTGCCCGGC GGCGAGCCGTTCCTGAAGATGGCCCAGGAATACCGCAACCCGGACAATTTCATCCGCACCGCACTGGTGCCG GCGATCAAGGAAACCCTCCAGGCCACCGCTTCGCTGATGAGCGCCGACGACTACTACGCCGGAGCCCGCAGC GAATTCGCCGCCGAGTTCGAGAACCAGCTCAACGACGGCCTGTACCTGATCAAGCGCAAGGAAGTCCGCGGG CCGCGCGGCGCCATTCCGCACCAGACCGCGATCCTCCAGGCCGGCACTGAGCAGGGAGCGTTCGGCGACAAC AACGCCAGCCAGTTCGTCACCGAGAAGGTCACTGATGCCAAGGGCATCCCGGTACGCAAGCAACAGCAGTTC CGCAAGTTCGGCGTCGAGGTGGTGGAAGCGCGGATCACCAACGTCGATCCCAACCCGCAGTACAAGCAGCGC ATGGTCAAGGTCCAGCAGGCGCTCGCCGAGCTGGCGGTGGCGCGGCAGAACCGCCTGAAGGAAGAAGAGGAA AAGCTGCTGGTCACCGCCCGCGGCGAGAAGGAAGTCGAGGCCAAGCGCCAGGAAACCCTGCGCGACCAGATC GAACGCACCACCCAGGCGGAAACCGACAAGCAATTGGCGGTGATCAACGCCGAGCGCGAGAAGCAGCGCGCC GAGATCGAGAAGCAGACCGCCGAACTGCTGCGCGACAAGGCCACGGTGACCGCCCAGGCCACCAAGATCACC GCCGACGCCGAGGCCTACGCCCGCGAAGCGGTGATCAAGGCGGACGGCGCGTTGCAGCCGAAGCTCGACGCG CTGATCGCGATCAACAAGGTCTGGGCCGAAGCCGCCGCCCAGGCCCCCGTCCCCAGCGTAATGATGGGCGCC GGCGCCAACGGCGCGGCGAGCCGCCAGGACGAGATCGGCCAGCTGATGGGCGTTCTGGCGACCAAGGCCGCC CGCGACCTGGCCCTCGACCTCAAGGTCAAGGACTGA