ViewGene
Locus Name:
GeneID:
Location:

GeneID:1243
TrivialName: PA14_51720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51720
PAO1 Ortholog Locus:PA0972
Sequence Length:1299
Protein Length:432
Start: 4595486
Stop: 4594188
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04361.1|AE004530_14 (AE004530) TolB protein [Pseudomonas aeruginosa PAO1]
Identities = 431/432 (99%), Positives = 432/432 (100%)
Sequence:
GTGAGTACCCTGATTCGCATTGCGCTGTTCGCCCTGGCCCTGGTGGCAGGTGCTGCGCAGGCTGCCGACCCG
CTGGTGATCTCCAGCGGTAACGACCGTGCCATTCCCATCGCCGTGGTGCCGTTCGGCTTCCAGGGGGGCAAC
GTGTTGCCGGAAGACATGTCCAATATCATCGGCAACGACCTGCGCAACTCCGGCTACTTCGAGCCGCTGCCC
CGGCAGAACATGATCAGCCAGCCGGCGCAGGCCAGCGAAGTGATCTTCCGTGACTGGAAGGCAGTTGGCGTC
AACTACGTGATGGTCGGCAACATCGTGCCTGCCGGCGGACGCCTGCAGGTGCAGTACGCATTGTTCGATGTC
GGCACCGAGCAGCAGGTCCTGACCGGCAGCGTGACCGGCAGCACCGATCAGCTCCGCGACATGTCGCACTAC
ATCGCCGACCAGTCGTTCGAGAAGCTCACCGGTATCAAGGGCGCGTTCTCCACCAAGATGCTCTATGTCACC
GCCGAGCGTTTCTCGGTCGACAACACCCGCTACACCTTGCAGCGCTCCGACTACGACGGCGCCCGCCCGGTG
ACCCTGCTGCAGTCGCGCGAGCCCATCGTGTCGCCGCGCTTCTCGCCCGATGGCCGCCGTATCGCCTATGTC
TCCTTCGAACAGAAGCGCCCGCGTATCTTCATCCAGTACGTCGATACTGGCCGTCGTGAGCAGATCACCAAT
TTCGAGGGCCTGAATGGCGCTCCGGCATTCTCCCCTGACGGCAACCGCCTGGCCTTCGTCCTGTCGCGCGAC
GGCAACCCGGAAATCTACGTCATGGACCTTGGTAGCCGCGCCCTGCGCCGCCTGACCAACAACCTGGCGATC
GATACCGAACCCTTCTGGGGCAAGGACGGCTCTACCCTGTACTTCACCTCGGACCGTGGCGGCAAGCCGCAG
ATCTACAAGATGAACGTGAACAGCGGTGCCGTGGACCGGGTAACCTTCATCGGCAACTACAACGCCAACCCG
AAACTCTCGGCCGACGAGAAGACCCTGGTAATGGTTCACCGCCAGCAGGGCTACACCAACTTCCAGATCGCC
GCCCAGGACCTCCAGCGCGGCAATCTGCGGGTGCTGTCGAACACCACTCTGGACGATTCGCCCACTGTTGCG
CCCAATGGCACCATGCTAATCTACGCCACCCGCCAGCAGGACCGGGGCGTGCTGATGCTCGTATCCATCAAC
GGACGCGTACGGATACCTCTCCCTACCGCTCAGGGCGATGTGCGCGAGCCTTCCTGGTCCCCTTACCTGAAC
TGA
Translation:
MSTLIRIALFALALVAGAAQAADPLVISSGNDRAIPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLP
RQNMISQPAQASEVIFRDWKAVGVNYVMVGNIVPAGGRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHY
IADQSFEKLTGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPIVSPRFSPDGRRIAYV
SFEQKRPRIFIQYVDTGRREQITNFEGLNGAPAFSPDGNRLAFVLSRDGNPEIYVMDLGSRALRRLTNNLAI
DTEPFWGKDGSTLYFTSDRGGKPQIYKMNVNSGAVDRVTFIGNYNANPKLSADEKTLVMVHRQQGYTNFQIA
AQDLQRGNLRVLSNTTLDDSPTVAPNGTMLIYATRQQDRGVLMLVSINGRVRIPLPTAQGDVREPSWSPYLN
*
AnnotationID:1252GeneID:1243
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 13:01:21
Gene Name:tolB
Confidence Code:2
GeneProduct:TolB protein
Cell Localization:(8) Periplasmic
Synonyms:PA0972
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0823
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0823, TolB, Periplasmic component of the Tol biopolymer transport system 
[Intracellular trafficking and secretion].
       CD-Length = 425 residues,  99.8% aligned
       Score =  391 bits (1006), Expect = 7e-110






   
Genomic Context:
tolQRAB (Pseudomonas aeruginosa) 






   
Comment:


















    ReferenceID:14311




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19632




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32071




  
Author/Investigator(s):
        Dennis JJ, Lafontaine ER, Sokol PA.





  
Title:
        Identification and characterization of the tolQRA genes of Pseudomonas aeruginosa.




  
PubMed:
        97113525


MedLine:
        




    
Source:
J Bacteriol. 1996 Dec;178(24):7059-68.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1243
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2261
                           PA0972_tr
                           translation of PA0972
                           432
                           99.76
                           99.99
                           0
                           2212.0
     

     
     
74081
                           gb|AAG04361.1|AE004530_14
                           (AE004530) TolB protein [Pseudomonas aeruginosa PAO1]
                           432
                           99.53
                           99.99
                           0
                           2209.0
     

     
     
74082
                           gb|AAC44661.2|
                           (U39558) TolB [Pseudomonas aeruginosa]
                           432
                           99.53
                           99.99
                           0
                           2209.0
     

     
     
74083
                           gb|AAN66846.1|AE016313_5
                           (AE016778) tolB protein [Pseudomonas putida KT2440]
                           433
                           78.75
                           91.45
                           1
                           1821.0
     

     
     
74084
                           emb|CAB50781.1|
                           (X74218) TolB protein [Pseudomonas putida]
                           433
                           78.75
                           91.45
                           1
                           1821.0
     

     






      

          
GC ORFID: 44245How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0972Glimmer Score: 

          
Start: 358421Stop: 359719

          
Length: 1299


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0972 translation of PA0972Homolog Bit Score 856.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4693 (ORF: BLASTX 694.0), t_PA0972 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTACCCTGATTCGCATTGCGCTGTTCGCCCTGGCCCTGGTGGCAGGTGCTGCGCAGGCTGCCGACCCG 
CTGGTGATCTCCAGCGGTAACGACCGTGCCATTCCCATCGCCGTGGTGCCGTTCGGCTTCCAGGGGGGCAAC 
GTGTTGCCGGAAGACATGTCCAATATCATCGGCAACGACCTGCGCAACTCCGGCTACTTCGAGCCGCTGCCC 
CGGCAGAACATGATCAGCCAGCCGGCGCAGGCCAGCGAAGTGATCTTCCGTGACTGGAAGGCAGTTGGCGTC 
AACTACGTGATGGTCGGCAACATCGTGCCTGCCGGCGGACGCCTGCAGGTGCAGTACGCATTGTTCGATGTC 
GGCACCGAGCAGCAGGTCCTGACCGGCAGCGTGACCGGCAGCACCGATCAGCTCCGCGACATGTCGCACTAC 
ATCGCCGACCAGTCGTTCGAGAAGCTCACCGGTATCAAGGGCGCGTTCTCCACCAAGATGCTCTATGTCACC 
GCCGAGCGTTTCTCGGTCGACAACACCCGCTACACCTTGCAGCGCTCCGACTACGACGGCGCCCGCCCGGTG 
ACCCTGCTGCAGTCGCGCGAGCCCATCGTGTCGCCGCGCTTCTCGCCCGATGGCCGCCGTATCGCCTATGTC 
TCCTTCGAACAGAAGCGCCCGCGTATCTTCATCCAGTACGTCGATACTGGCCGTCGTGAGCAGATCACCAAT 
TTCGAGGGCCTGAATGGCGCTCCGGCATTCTCCCCTGACGGCAACCGCCTGGCCTTCGTCCTGTCGCGCGAC 
GGCAACCCGGAAATCTACGTCATGGACCTTGGTAGCCGCGCCCTGCGCCGCCTGACCAACAACCTGGCGATC 
GATACCGAACCCTTCTGGGGCAAGGACGGCTCTACCCTGTACTTCACCTCGGACCGTGGCGGCAAGCCGCAG 
ATCTACAAGATGAACGTGAACAGCGGTGCCGTGGACCGGGTAACCTTCATCGGCAACTACAACGCCAACCCG 
AAACTCTCGGCCGACGAGAAGACCCTGGTAATGGTTCACCGCCAGCAGGGCTACACCAACTTCCAGATCGCC 
GCCCAGGACCTCCAGCGCGGCAATCTGCGGGTGCTGTCGAACACCACTCTGGACGATTCGCCCACTGTTGCG 
CCCAATGGCACCATGCTAATCTACGCCACCCGCCAGCAGGACCGGGGCGTGCTGATGCTCGTATCCATCAAC 
GGACGCGTACGGATACCTCTCCCTACCGCTCAGGGCGATGTGCGCGAGCCTTCCTGGTCCCCTTACCTGAAC 
TGA