ViewGene
Locus Name:
GeneID:
Location:

GeneID:1242
TrivialName: PA14_01460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01460
PAO1 Ortholog Locus:PA0119
Sequence Length:1350
Protein Length:449
Start: 136732
Stop: 138081
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03509.1|AE004450_4 (AE004450) probable dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
Identities = 447/449 (99%), Positives = 449/449 (100%)
Sequence:
ATGGAGACTCCTGCGATGTTCATCAAGCGCTGTTCCCGCTCGATATTCCTGCAAGTCGTGATTGGCCTGGTG
ATAGGCGTCATCTGCGGGGTCGGCATTCCCGACCTGGCCGTGCAGATGAAGCCGCTGGGCGATGGCTTCATC
AAGCTGATCAAGATGCTCATCGCACTGATCGTCTTCTGCGTGGTGGTCAACGGCATCTCCGGCGCCGGCGAC
CTGAAGAAGGTCGGCCGCATCGGCCTGAAGTCGGTGATCTATTTCGAAATCCTCACCACCATCGCCCTGGTC
CTCGGCCTGGTGGTCGCCTACAGCCTGGGCCTGGGCAGCGGCGCCAACATCCATCTCAACGAACTGCCCGCC
GGCGACGTCGCCCTGTATACCGGGCGCACCCAGGAAATCCATGGCCCCGTGGCATTCCTCATGGGCCTGATC
CCGACCTCTGTGTTCAGCGCCTTCGCCGAGAACGACATCCTCCAGGTCCTGCTGTTCTCCGTGCTGTTCGGC
AGCGCCCTGAACCTGGTCGGCGAGCAGGCCAGCGGCGTGGCCCGCCTGATCAACGAATTCAGCCACATCGTG
TTCCGCATCATGGGCATGATCGTGCGCCTGGCACCGCTCGGCGTGTTCGGCGCGGTGGCCTTCACCACCGCC
CGCTACGGCGTCGACTCGCTCAGCCACCTGGGCGCGCTGGTGCTGGTGTTCTACGCCACCTGCCTGGTCTTC
GTCATGGCGGTGCTCGGTAGCGTCCTGCGTCTCTCCGGGGTGCGCATGCTGCCGTTCCTGCGCTACTTCCGC
GAAGAGCTGATGATCGTGATGGGCACCGCCTCCTCCGACGCGGTGCTGCCGCAGGTGATGCGCAAGCTCGAG
CACATGGGCATCCGCAGCTCCACGGTAGGCCTGGTGATTCCCACCGGCTACTCGTTCAACCTCGATGGATTC
TCGATCTACCTGACCCTGGCGGTGGTGTTCATCGCCCACGTCACCGGCACGCCGCTGGCGATGACCGACCTG
GTCACCATCCTGCTGGTTTCGCTGGTGACCTCCAAGGGCGCCCACGGCATTCCCGGCTCGGCCCTGGTGATC
CTCGCCGCCACCCTCACCGCGGTGCCGGCGATCCCGGTGGCCGGCCTGGTGCTGGTGCTTTCGGTGGACTGG
TTCATGGGCATCGGTCGCGCGCTGACCAACCTGATCGGCAACTGCGTGGCCACCGTGACCATCGCCCGCTGG
GAAAACGACATCGATATGCCGCGCGCGCAGGCCATACTCGACGGGCGCCTGGAGGCGCCGGCCAAGGCCGAC
GGCGAGCCGCTCAAGCGCAGCGCGGTGGCCGGGGAAGGCAAGCTGCATGGCTGA
Translation:
METPAMFIKRCSRSIFLQVVIGLVIGVICGVGIPDLAVQMKPLGDGFIKLIKMLIALIVFCVVVNGISGAGD
LKKVGRIGLKSVIYFEILTTIALVLGLVVAYSLGLGSGANIHLNELPAGDVALYTGRTQEIHGPVAFLMGLI
PTSVFSAFAENDILQVLLFSVLFGSALNLVGEQASGVARLINEFSHIVFRIMGMIVRLAPLGVFGAVAFTTA
RYGVDSLSHLGALVLVFYATCLVFVMAVLGSVLRLSGVRMLPFLRYFREELMIVMGTASSDAVLPQVMRKLE
HMGIRSSTVGLVIPTGYSFNLDGFSIYLTLAVVFIAHVTGTPLAMTDLVTILLVSLVTSKGAHGIPGSALVI
LAATLTAVPAIPVAGLVLVLSVDWFMGIGRALTNLIGNCVATVTIARWENDIDMPRAQAILDGRLEAPAKAD
GEPLKRSAVAGEGKLHG*
AnnotationID:1251GeneID:1242
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:27
Gene Name:
Confidence Code:3
GeneProduct:putative dicarboxylate transporter
Cell Localization:()
Synonyms:dctA
Cell Localization Confidence Code:5
MolecularFunction:putative C4-dicarboxylate transport protein
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1301,pfam00375
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67868.1|AE016418_8 (AE016782) C4-dicarboxylate transporter [Pseudomonas putida KT2440]
          Length = 436

 Score =  646 bits (1667), Expect = 0.0
 Identities = 323/417 (77%), Positives = 372/417 (89%)

>gb|AAD22406.1|AF079997_3 (AF079997) DctA [Pseudomonas putida]
          Length = 441

 Score =  643 bits (1659), Expect = 0.0
 Identities = 324/422 (76%), Positives = 374/422 (88%), Gaps = 4/422 (0%)

>emb|CAD17063.1| (AL646074) PROBABLE C4-DICARBOXYLATE TRANSPORT TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
          Length = 446

 Score =  501 bits (1291), Expect = e-141
 Identities = 258/421 (61%), Positives = 321/421 (76%), Gaps = 2/421 (0%)








 
Structural Features:
COG1301, GltP, Na+/H+-dicarboxylate symporters 
[Energy production and conversion]
CD-Length = 415 residues,  99.8% aligned
Score =  338 bits (868), Expect = 9e-94
Identities = 194/426 (45%), Positives = 278/426 (65%), Gaps = 17/426 (3%)

pfam00375, SDF, Sodium:dicarboxylate symporter family.
CD-Length = 400 residues, 100.0% aligned
Score =  291 bits (746), Expect = 1e-79
Identities = 152/403 (37%), Positives = 235/403 (58%), Gaps = 12/403 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2487




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19630




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33492




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1242_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1242
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2259
                           PA0119_tr
                           translation of PA0119
                           449
                           99.55
                           99.99
                           0
                           2215.0
     

     
     
74017
                           gb|AAG03509.1|AE004450_4
                           (AE004450) probable dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
                           449
                           99.55
                           99.99
                           0
                           2215.0
     

     
     
74018
                           gb|AAN67868.1|AE016418_8
                           (AE016782) C4-dicarboxylate transporter [Pseudomonas putida KT2440]
                           449
                           73.05
                           84.18
                           13
                           1659.0
     

     
     
74019
                           gb|AAD22406.1|AF079997_3
                           (AF079997) DctA [Pseudomonas putida]
                           456
                           71.49
                           82.89
                           22
                           1653.0
     

     
     
74020
                           emb|CAD17063.1|
                           (AL646074) PROBABLE C4-DICARBOXYLATE TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           463
                           56.58
                           70.62
                           31
                           1294.0
     

     






      

          
GC ORFID: 44244How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0119Glimmer Score: 

          
Start: 5938071Stop: 5939420

          
Length: 1350


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0119 translation of PA0119Homolog Bit Score 857.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6446 (ORF: BLASTX 415.0), t_PA1183 (ORF: BLASTX 411.0), t_PA0119 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGACTCCTGCGATGTTCATCAAGCGCTGTTCCCGCTCGATATTCCTGCAAGTCGTGATTGGCCTGGTG 
ATAGGCGTCATCTGCGGGGTCGGCATTCCCGACCTGGCCGTGCAGATGAAGCCGCTGGGCGATGGCTTCATC 
AAGCTGATCAAGATGCTCATCGCACTGATCGTCTTCTGCGTGGTGGTCAACGGCATCTCCGGCGCCGGCGAC 
CTGAAGAAGGTCGGCCGCATCGGCCTGAAGTCGGTGATCTATTTCGAAATCCTCACCACCATCGCCCTGGTC 
CTCGGCCTGGTGGTCGCCTACAGCCTGGGCCTGGGCAGCGGCGCCAACATCCATCTCAACGAACTGCCCGCC 
GGCGACGTCGCCCTGTATACCGGGCGCACCCAGGAAATCCATGGCCCCGTGGCATTCCTCATGGGCCTGATC 
CCGACCTCTGTGTTCAGCGCCTTCGCCGAGAACGACATCCTCCAGGTCCTGCTGTTCTCCGTGCTGTTCGGC 
AGCGCCCTGAACCTGGTCGGCGAGCAGGCCAGCGGCGTGGCCCGCCTGATCAACGAATTCAGCCACATCGTG 
TTCCGCATCATGGGCATGATCGTGCGCCTGGCACCGCTCGGCGTGTTCGGCGCGGTGGCCTTCACCACCGCC 
CGCTACGGCGTCGACTCGCTCAGCCACCTGGGCGCGCTGGTGCTGGTGTTCTACGCCACCTGCCTGGTCTTC 
GTCATGGCGGTGCTCGGTAGCGTCCTGCGTCTCTCCGGGGTGCGCATGCTGCCGTTCCTGCGCTACTTCCGC 
GAAGAGCTGATGATCGTGATGGGCACCGCCTCCTCCGACGCGGTGCTGCCGCAGGTGATGCGCAAGCTCGAG 
CACATGGGCATCCGCAGCTCCACGGTAGGCCTGGTGATTCCCACCGGCTACTCGTTCAACCTCGATGGATTC 
TCGATCTACCTGACCCTGGCGGTGGTGTTCATCGCCCACGTCACCGGCACGCCGCTGGCGATGACCGACCTG 
GTCACCATCCTGCTGGTTTCGCTGGTGACCTCCAAGGGCGCCCACGGCATTCCCGGCTCGGCCCTGGTGATC 
CTCGCCGCCACCCTCACCGCGGTGCCGGCGATCCCGGTGGCCGGCCTGGTGCTGGTGCTTTCGGTGGACTGG 
TTCATGGGCATCGGTCGCGCGCTGACCAACCTGATCGGCAACTGCGTGGCCACCGTGACCATCGCCCGCTGG 
GAAAACGACATCGATATGCCGCGCGCGCAGGCCATACTCGACGGGCGCCTGGAGGCGCCGGCCAAGGCCGAC 
GGCGAGCCGCTCAAGCGCAGCGCGGTGGCCGGGGAAGGCAAGCTGCATGGCTGA