ViewGene
Locus Name:
GeneID:
Location:

GeneID:124
TrivialName: PA14_37900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37900
PAO1 Ortholog Locus:PA2057
Sequence Length:2541
Protein Length:846
Start: 3382925
Stop: 3380385
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05445.1|AE004632_4 (AE004632) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 845/846 (99%), Positives = 846/846 (100%)
Sequence:
GTGGTGACCGGCTCGCGGATTCCCCGCGCCCAGCAGGAAGGGCCGTCGCCGGTCACGGTGATCAGCAGCGAG
GAAATCCAGAACCGTGGCTACCGCAACGTCTTCGAGGCCTTGCAGACGCAGACCCAGAACACCGGCATGACC
CAGGGCGAGGACTACGGCAACACCTGGCAACCGGCGGCCAACGCCCTCAACCTGCGCGATCTCGGCCCCAAC
CACACGCTGGTGCTGATCAACGGCCGGCGCGTCGCCGACTACCCGACCGCCTATGGCGGCTCGGTGAACTTC
ACCAACCTGGCGAACATCCCGGCGGTCATGATCGACCGCATCGAGATCCTCAGCGGCGGCGCCTCGGCGATC
TACGGCTCGGATGCCATCGCCGGGGTGGTCAATATCGTCCTGAAGAAGAAATTCGATGGCGTCGACGTCAAC
CTGCGCGCCGGCACCACCGAGCGCGGCGGCGGCGACAACCAGCGCCTGCAACTGGTCGGCGGCGGCGCGACG
GGCGACTTCGAAGGTCTGTTCGGCCTGCAGGTCGAGCAGCGCCAGCCGGTCTGGGCCAACCAGCGCGGTTTC
ATGGACAGCTACCCGGACGGCAACAACGTCGGTTACCGGCTGAACCCGCAGAGCGGACGCTACCTCGGCGAC
GCCTCCTGCGCCGGCCTCGGCGGCCTGTTCGGCGGCAACGTGGCGCCGGTGCCGGGCGCCAGGGGGGGCTAT
CGCTGCATGACCGACCAGTACTACAACAACTACTGGACCCTGCAGACCAAGAAGGAAAACTACGACGGCTAC
GCCGGCGGCACCTGGCACCTGAGCGACAGCGGCAAGCTGTTCGCCGACCTGCTGTTCGGCTTCGACCACCTG
CAGAACAATACCCGCGGGCCGTCCTTCACCTCGCCGGACTTCATCAATGCCTCCAGCGGCGACCTGGAGCGC
TGGTACCGGCTGTTCTCGCCCGAGGAGATCGGCGGCAAGAGCAGCAACAACAGCAAGTGGCGCGAGGTGTCC
TGGACCGGCACCCTCGGCTACAGCGACCGCGTCGCCAATACCTCCTGGGAATACGAACTGGCCGCGACCCGC
TCCGAGTACCGCAGCGACCGCACTACCCGCTACACCCCGGCGGCCGGGATCCTCGACCTGTACCTGGGCCGC
AAGCTCGGCGAACGCGATGGCTACCCGGTCTACGATCCCGATCCGGCGCGCCTCGGACGTCCGCTGAGCGAG
GAAGAATGGCGCAGCCTGCGGCGCAACGTGACCCAGCACAGCGAGTCCTACTCGCAGACCTACAGCTTCACC
GGCAACGGCGAGCTGTTCGACCTGCCGGCCGGCCCGGTGGCCTTCGCCGGCGTGCTGGAGGTGGGCAAGCAG
GGCTACAGGATCCGCCCCGATTCGCAATACAACGACGGCTCCCTCTACAACGTCTCCAAGGCCAGCAGCTCC
GGCGGCTCGCGCGACCGTTACGCCGCCGGCGGCGAATTCAGCATCCCGCTGCATGACACGCTGCTGGCGTCC
GCCGCCGGCCGCTGGGACCAGTACAGGTTCAGCGGTCGCACCGAGGAGCAGACTACCTACAACCTGGGGCTG
GAGTGGCGCCCGCTGACCAGCCTGCTGCTCCGCGGCAGCTACGGCACCAGCTTCCGCGCGCCGGACCTGAAC
TACATCTACCAGGCCGACGCCAACGGCTACTACCCGGCGCAGAAGGACTACTACGGTTGCGAGAAAGGCGTC
GACGGCGCTTGCAAGAACGGTCGGGTCGACTACGTGCAGAGCGGCACGCCCGACCTGAAGTCCGAGCGCGGG
CGCTACTGGAGCTACGGCTTCGTCTGGTCGCCGTCGAGCAGGTTCGACTTTTCCGCCGACTACTACCACATC
CAGATCGACGACCTGCTGACCACCCTCGACCCGGACAAACTGCTGCGCGACGAGGCGGCCTGCCGCAGCGGC
GGGCTCGATCCGGACTCGGCGCAGTGCCGCGACACCCTGGCGCGGGTCGAACGCAACGCCGGCGACGCCAGC
GTCGATCCGAATCGCCTGAACAAGGTCTACGTCAATGCCATCAACGCGGCCAAGGAGCGCACCAGCGGCATC
GACCTGCGCAGCAACATCCGCTGGGGCGCCGGTGACTACGGCGCGTTCTCCTCGACCCTCGGCTACACCCTG
GTGTTGTCCCACGACTACCAGCAGTCCGACGACTACCCCAGCGAGAACCAGCGCGACAGCCTCGACTCCCAC
GACTGGCGCAGCAAACTCAACGCCAGCCTGACCTGGGACTACGCACAGTTCACCTCGACGCTCTTCGCGGTG
CGCTACGGCAGCGTTACCAACGCCGCTGGCAGCGGGCGCCTGAGCCCGTGGACGGTGTTCAACGCCAGCGCC
CGCTACCGGCTCAACGAACGCGCCAGCGTCGGCCTGACGGTGAACAACCTGCTCGACCAGATCAAGGAGGAC
GACTCCGATGGCTGGCCGTACTATCCCACCGGCAACTACGACGCCATGGGCCGCCAATGGTGGCTGGACTTC
AGCTATCACTTCGGTGGTTGA
Translation:
MVTGSRIPRAQQEGPSPVTVISSEEIQNRGYRNVFEALQTQTQNTGMTQGEDYGNTWQPAANALNLRDLGPN
HTLVLINGRRVADYPTAYGGSVNFTNLANIPAVMIDRIEILSGGASAIYGSDAIAGVVNIVLKKKFDGVDVN
LRAGTTERGGGDNQRLQLVGGGATGDFEGLFGLQVEQRQPVWANQRGFMDSYPDGNNVGYRLNPQSGRYLGD
ASCAGLGGLFGGNVAPVPGARGGYRCMTDQYYNNYWTLQTKKENYDGYAGGTWHLSDSGKLFADLLFGFDHL
QNNTRGPSFTSPDFINASSGDLERWYRLFSPEEIGGKSSNNSKWREVSWTGTLGYSDRVANTSWEYELAATR
SEYRSDRTTRYTPAAGILDLYLGRKLGERDGYPVYDPDPARLGRPLSEEEWRSLRRNVTQHSESYSQTYSFT
GNGELFDLPAGPVAFAGVLEVGKQGYRIRPDSQYNDGSLYNVSKASSSGGSRDRYAAGGEFSIPLHDTLLAS
AAGRWDQYRFSGRTEEQTTYNLGLEWRPLTSLLLRGSYGTSFRAPDLNYIYQADANGYYPAQKDYYGCEKGV
DGACKNGRVDYVQSGTPDLKSERGRYWSYGFVWSPSSRFDFSADYYHIQIDDLLTTLDPDKLLRDEAACRSG
GLDPDSAQCRDTLARVERNAGDASVDPNRLNKVYVNAINAAKERTSGIDLRSNIRWGAGDYGAFSSTLGYTL
VLSHDYQQSDDYPSENQRDSLDSHDWRSKLNASLTWDYAQFTSTLFAVRYGSVTNAAGSGRLSPWTVFNASA
RYRLNERASVGLTVNNLLDQIKEDDSDGWPYYPTGNYDAMGRQWWLDFSYHFGG*
AnnotationID:134GeneID:124
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:48
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:PA2057
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00593
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM37046.1| (AE011856) TonB-dependent receptor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 942

 Score =  506 bits (1302), Expect = e-142
 Identities = 331/903 (36%), Positives = 470/903 (52%), Gaps = 73/903 (8%)








 
Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  149 bits (377), Expect = 1e-36
Identities = 144/853 (16%), Positives = 254/853 (29%), Gaps = 161/853 (18%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14059




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17393




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32647




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:124_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:124
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
233
                           PA2057_tr
                           translation of PA2057
                           846
                           99.88
                           99.99
                           0
                           4539.0
     

     
     
16920
                           gb|AAG05445.1|AE004632_4
                           (AE004632) hypothetical protein PA2057 [Pseudomonas aeruginosa PAO1]
                           846
                           99.76
                           99.99
                           0
                           4536.0
     

     
     
16921
                           gb|AAQ58693.1|
                           (AE016913) probable TonB-dependent receptor [Chromobacterium violaceum ATCC 12472]
                           902
                           44.01
                           60.42
                           64
                           2009.0
     

     
     
16923
                           gb|AAF83360.1|AE003902_5
                           (AE003902) conserved hypothetical protein [Xylella fastidiosa 9a5c]
                           1114
                           23.69
                           35.54
                           341
                           573.0
     

     
     
16922
                           gb|AAK23083.1|
                           (AE005787) TonB-dependent receptor [Caulobacter crescentus CB15]
                           1101
                           23.61
                           36.51
                           355
                           628.0
     

     






      

          
GC ORFID: 43126How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2057Glimmer Score: 

          
Start: 1570988Stop: 1573528

          
Length: 2541


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2057 translation of PA2057Homolog Bit Score 1753.0

          
Other Homologs:  t_PA2057 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTGACCGGCTCGCGGATTCCCCGCGCCCAGCAGGAAGGGCCGTCGCCGGTCACGGTGATCAGCAGCGAG 
GAAATCCAGAACCGTGGCTACCGCAACGTCTTCGAGGCCTTGCAGACGCAGACCCAGAACACCGGCATGACC 
CAGGGCGAGGACTACGGCAACACCTGGCAACCGGCGGCCAACGCCCTCAACCTGCGCGATCTCGGCCCCAAC 
CACACGCTGGTGCTGATCAACGGCCGGCGCGTCGCCGACTACCCGACCGCCTATGGCGGCTCGGTGAACTTC 
ACCAACCTGGCGAACATCCCGGCGGTCATGATCGACCGCATCGAGATCCTCAGCGGCGGCGCCTCGGCGATC 
TACGGCTCGGATGCCATCGCCGGGGTGGTCAATATCGTCCTGAAGAAGAAATTCGATGGCGTCGACGTCAAC 
CTGCGCGCCGGCACCACCGAGCGCGGCGGCGGCGACAACCAGCGCCTGCAACTGGTCGGCGGCGGCGCGACG 
GGCGACTTCGAAGGTCTGTTCGGCCTGCAGGTCGAGCAGCGCCAGCCGGTCTGGGCCAACCAGCGCGGTTTC 
ATGGACAGCTACCCGGACGGCAACAACGTCGGTTACCGGCTGAACCCGCAGAGCGGACGCTACCTCGGCGAC 
GCCTCCTGCGCCGGCCTCGGCGGCCTGTTCGGCGGCAACGTGGCGCCGGTGCCGGGCGCCAGGGGGGGCTAT 
CGCTGCATGACCGACCAGTACTACAACAACTACTGGACCCTGCAGACCAAGAAGGAAAACTACGACGGCTAC 
GCCGGCGGCACCTGGCACCTGAGCGACAGCGGCAAGCTGTTCGCCGACCTGCTGTTCGGCTTCGACCACCTG 
CAGAACAATACCCGCGGGCCGTCCTTCACCTCGCCGGACTTCATCAATGCCTCCAGCGGCGACCTGGAGCGC 
TGGTACCGGCTGTTCTCGCCCGAGGAGATCGGCGGCAAGAGCAGCAACAACAGCAAGTGGCGCGAGGTGTCC 
TGGACCGGCACCCTCGGCTACAGCGACCGCGTCGCCAATACCTCCTGGGAATACGAACTGGCCGCGACCCGC 
TCCGAGTACCGCAGCGACCGCACTACCCGCTACACCCCGGCGGCCGGGATCCTCGACCTGTACCTGGGCCGC 
AAGCTCGGCGAACGCGATGGCTACCCGGTCTACGATCCCGATCCGGCGCGCCTCGGACGTCCGCTGAGCGAG 
GAAGAATGGCGCAGCCTGCGGCGCAACGTGACCCAGCACAGCGAGTCCTACTCGCAGACCTACAGCTTCACC 
GGCAACGGCGAGCTGTTCGACCTGCCGGCCGGCCCGGTGGCCTTCGCCGGCGTGCTGGAGGTGGGCAAGCAG 
GGCTACAGGATCCGCCCCGATTCGCAATACAACGACGGCTCCCTCTACAACGTCTCCAAGGCCAGCAGCTCC 
GGCGGCTCGCGCGACCGTTACGCCGCCGGCGGCGAATTCAGCATCCCGCTGCATGACACGCTGCTGGCGTCC 
GCCGCCGGCCGCTGGGACCAGTACAGGTTCAGCGGTCGCACCGAGGAGCAGACTACCTACAACCTGGGGCTG 
GAGTGGCGCCCGCTGACCAGCCTGCTGCTCCGCGGCAGCTACGGCACCAGCTTCCGCGCGCCGGACCTGAAC 
TACATCTACCAGGCCGACGCCAACGGCTACTACCCGGCGCAGAAGGACTACTACGGTTGCGAGAAAGGCGTC 
GACGGCGCTTGCAAGAACGGTCGGGTCGACTACGTGCAGAGCGGCACGCCCGACCTGAAGTCCGAGCGCGGG 
CGCTACTGGAGCTACGGCTTCGTCTGGTCGCCGTCGAGCAGGTTCGACTTTTCCGCCGACTACTACCACATC 
CAGATCGACGACCTGCTGACCACCCTCGACCCGGACAAACTGCTGCGCGACGAGGCGGCCTGCCGCAGCGGC 
GGGCTCGATCCGGACTCGGCGCAGTGCCGCGACACCCTGGCGCGGGTCGAACGCAACGCCGGCGACGCCAGC 
GTCGATCCGAATCGCCTGAACAAGGTCTACGTCAATGCCATCAACGCGGCCAAGGAGCGCACCAGCGGCATC 
GACCTGCGCAGCAACATCCGCTGGGGCGCCGGTGACTACGGCGCGTTCTCCTCGACCCTCGGCTACACCCTG 
GTGTTGTCCCACGACTACCAGCAGTCCGACGACTACCCCAGCGAGAACCAGCGCGACAGCCTCGACTCCCAC 
GACTGGCGCAGCAAACTCAACGCCAGCCTGACCTGGGACTACGCACAGTTCACCTCGACGCTCTTCGCGGTG 
CGCTACGGCAGCGTTACCAACGCCGCTGGCAGCGGGCGCCTGAGCCCGTGGACGGTGTTCAACGCCAGCGCC 
CGCTACCGGCTCAACGAACGCGCCAGCGTCGGCCTGACGGTGAACAACCTGCTCGACCAGATCAAGGAGGAC 
GACTCCGATGGCTGGCCGTACTATCCCACCGGCAACTACGACGCCATGGGCCGCCAATGGTGGCTGGACTTC 
AGCTATCACTTCGGTGGTTGA