ViewGene
Locus Name:
GeneID:
Location:

GeneID:1238
TrivialName: PA14_17740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17740
PAO1 Ortholog Locus:PA3597
Sequence Length:1323
Protein Length:440
Start: 1524359
Stop: 1525681
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06985.1|AE004780_4 (AE004780) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 437/440 (99%), Positives = 438/440 (99%)
Sequence:
ATGGCCAGACTCAAGCGCACCCTGTCGCTGGGTTCCGTGGTGCTGTTCGGCATCGCCTACATGACCCCCATC
ATCGTCCTCGGGACTTTCGGCATCCTCGCCGAGACCACCCAGGGACACGTCCCCGCCGCCTACATCGCCGCT
TCCCTGGCGATGCTCTTCACCGCCCTCAGCTACGGGCGCATGGCCGCGGCCTTCCCCGTGGCCGGCTCGGCC
TATACCTACGTGCGCAAGGCCATCGATTCCCGGCTCGGCTTCATCGCCGGCTGGGCGGTGCTGCTCGACTAC
CTGTTCCTGCCGATGGCGATCTGGCTGATCGGCGCCGCCTACCTGCACTCGGCCTTTCCCGCGGTACCCAAC
GCGGTCTGGGTGCTGGCGTTCATCGGCGTGACCACGACGATCAACATCGTCGGCCTGCGCCTGGCGAAGAAC
GTCAATGGCCTGCTGATGCTGGTGCAGTTCCTGGTCCTCGGCGCCTTCGTCGCGCTCTGCGTGCACTACGTG
CTGGGCGACCCGGGCAAGCCGCTATGGTCACTGCAACCGTTGCTCGGTGGCGACCTGCAGGTGCCGCTGGTG
ATGAGCGGTGCGGCGATCGCCTGCTACTCGTTCCTCGGTTTCGACGCGGTCAGTACCCTGACCGAGGAAACC
CGCGACCCGCGGCGCAACATCCCGCGGGCGATCCTGCTGATCACCCTGCTGGGCGGGTTGATCTTCATCGTC
ACCTCGTACTTCGTGCAACTGGCGCACCCGTCGTTCGCCTTCGACAGCGCGGACTCGGCGGCCTACGAGATC
GCCCGCAACATCGGTGGCGACCTGTTCGTGACCTTCTTCCTGGTCGGCCTGATCGTCGGCCAGTTCACCTCC
GGTCTCTCGGCCCAGGCCAGCGCCTCGCGCCTGCTCTTCGCCATGGGCCGCGACGGCGTCCTTCCGCGGCCG
TTCTTCGGGCGTCTCGGCAAGCGCTTCGAGACGCCGGTGAACAGCATCGTCCTGTGCGGTGTGGTGGCCTTG
CTGGCGCTACAGATGGACGTGACCACCTCCACCTCGTTCATCAACTTCGGCGCCTTCCTCGCCTTCAGCCTG
GTCAACCTGTCGGTGGTCTTCCACTACTACCTTGGCGCCGAGCGCCGCGGCCCACGGGAAACCCTGTTGTTC
CTGGTATTCCCTGGCATCGGCCTGGTCGCCGACCTGTGGTTGATGGCCAGCCTCGACCATCTGGCGATCATC
CTCGGCCTCTGCTGGCTGGCGCTGGGCGCGGTGTACCTGGCGGCGATCACCCACGGTTTCCGCGAGCAGCCG
CCGGAGATGCGTTTCGAGGAGGGCTGA
Translation:
MARLKRTLSLGSVVLFGIAYMTPIIVLGTFGILAETTQGHVPAAYIAASLAMLFTALSYGRMAAAFPVAGSA
YTYVRKAIDSRLGFIAGWAVLLDYLFLPMAIWLIGAAYLHSAFPAVPNAVWVLAFIGVTTTINIVGLRLAKN
VNGLLMLVQFLVLGAFVALCVHYVLGDPGKPLWSLQPLLGGDLQVPLVMSGAAIACYSFLGFDAVSTLTEET
RDPRRNIPRAILLITLLGGLIFIVTSYFVQLAHPSFAFDSADSAAYEIARNIGGDLFVTFFLVGLIVGQFTS
GLSAQASASRLLFAMGRDGVLPRPFFGRLGKRFETPVNSIVLCGVVALLALQMDVTTSTSFINFGAFLAFSL
VNLSVVFHYYLGAERRGPRETLLFLVFPGIGLVADLWLMASLDHLAIILGLCWLALGAVYLAAITHGFREQP
PEMRFEEG*
AnnotationID:1247GeneID:1238
AnnotatorUID: diggins
Modification Date/Time: 2005-07-01 22:10:49
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid/amine transport protein
Cell Localization:(4) Inner membrane protein
Synonyms:ycjJ
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative amino acid permease
Functional Category Confidence Code:5
COGs:COG0531
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC69064.1| (AP005026) putative amino acid permease [Streptomyces avermitilis
           MA-4680]
          Length = 463

 Score =  496 bits (1278), Expect = e-140
 Identities = 257/435 (59%), Positives = 317/435 (72%), Gaps = 1/435 (0%)

>gb|AAN66853.1|AE016313_12 (AE016778) amino acid transporter, putative [Pseudomonas putida
           KT2440]
          Length = 450

 Score =  373 bits (958), Expect = e-102
 Identities = 199/438 (45%), Positives = 278/438 (63%), Gaps = 11/438 (2%)

>gb|AAC74378.1| (AE000227) putative amino acid/amine transport protein [Escherichia
           coli K12]
          Length = 479

 Score =  356 bits (913), Expect = 2e-97
 Identities = 188/436 (43%), Positives = 275/436 (63%), Gaps = 9/436 (2%)






 
Structural Features:
COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 466 residues,  94.4% aligned
Score =  132 bits (334), Expect = 1e-31
Identities = 113/445 (25%), Positives = 210/445 (47%), Gaps = 21/445 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2479




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19622




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31944




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1238_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1238
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2253
                           PA3597_tr
                           translation of PA3597
                           440
                           99.31
                           99.54
                           0
                           2213.0
     

     
     
73767
                           gb|AAG06985.1|AE004780_4
                           (AE004780) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           440
                           99.31
                           99.54
                           0
                           2213.0
     

     
     
73768
                           dbj|BAC69064.1|
                           (AP005026) putative amino acid permease [Streptomyces avermitilis MA-4680]
                           467
                           55.88
                           68.95
                           31
                           1279.0
     

     
     
73770
                           gb|AAK01507.1|
                           (AF241171) putative amino acid/amine transport protein [Pseudomonas aeruginosa]
                           451
                           49.00
                           66.07
                           19
                           1113.0
     

     
     
73769
                           gb|AAN68410.1|AE016473_8
                           (AE016784) amino acid permease family protein [Pseudomonas putida KT2440]
                           448
                           48.66
                           66.07
                           13
                           1111.0
     

     






      

          
GC ORFID: 44240How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3597Glimmer Score: 

          
Start: 3429577Stop: 3428255

          
Length: 1323


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3597 translation of PA3597Homolog Bit Score 857.0

          
Other Homologs:  t_PA2041 (ORF: BLASTX 374.0), t_PA3597 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGACTCAAGCGCACCCTGTCGCTGGGTTCCGTGGTGCTGTTCGGCATCGCCTACATGACCCCCATC 
ATCGTCCTCGGGACTTTCGGCATCCTCGCCGAGACCACCCAGGGACACGTCCCCGCCGCCTACATCGCCGCT 
TCCCTGGCGATGCTCTTCACCGCCCTCAGCTACGGGCGCATGGCCGCGGCCTTCCCCGTGGCCGGCTCGGCC 
TATACCTACGTGCGCAAGGCCATCGATTCCCGGCTCGGCTTCATCGCCGGCTGGGCGGTGCTGCTCGACTAC 
CTGTTCCTGCCGATGGCGATCTGGCTGATCGGCGCCGCCTACCTGCACTCGGCCTTTCCCGCGGTACCCAAC 
GCGGTCTGGGTGCTGGCGTTCATCGGCGTGACCACGACGATCAACATCGTCGGCCTGCGCCTGGCGAAGAAC 
GTCAATGGCCTGCTGATGCTGGTGCAGTTCCTGGTCCTCGGCGCCTTCGTCGCGCTCTGCGTGCACTACGTG 
CTGGGCGACCCGGGCAAGCCGCTATGGTCACTGCAACCGTTGCTCGGTGGCGACCTGCAGGTGCCGCTGGTG 
ATGAGCGGTGCGGCGATCGCCTGCTACTCGTTCCTCGGTTTCGACGCGGTCAGTACCCTGACCGAGGAAACC 
CGCGACCCGCGGCGCAACATCCCGCGGGCGATCCTGCTGATCACCCTGCTGGGCGGGTTGATCTTCATCGTC 
ACCTCGTACTTCGTGCAACTGGCGCACCCGTCGTTCGCCTTCGACAGCGCGGACTCGGCGGCCTACGAGATC 
GCCCGCAACATCGGTGGCGACCTGTTCGTGACCTTCTTCCTGGTCGGCCTGATCGTCGGCCAGTTCACCTCC 
GGTCTCTCGGCCCAGGCCAGCGCCTCGCGCCTGCTCTTCGCCATGGGCCGCGACGGCGTCCTTCCGCGGCCG 
TTCTTCGGGCGTCTCGGCAAGCGCTTCGAGACGCCGGTGAACAGCATCGTCCTGTGCGGTGTGGTGGCCTTG 
CTGGCGCTACAGATGGACGTGACCACCTCCACCTCGTTCATCAACTTCGGCGCCTTCCTCGCCTTCAGCCTG 
GTCAACCTGTCGGTGGTCTTCCACTACTACCTTGGCGCCGAGCGCCGCGGCCCACGGGAAACCCTGTTGTTC 
CTGGTATTCCCTGGCATCGGCCTGGTCGCCGACCTGTGGTTGATGGCCAGCCTCGACCATCTGGCGATCATC 
CTCGGCCTCTGCTGGCTGGCGCTGGGCGCGGTGTACCTGGCGGCGATCACCCACGGTTTCCGCGAGCAGCCG 
CCGGAGATGCGTTTCGAGGAGGGCTGA