ViewGene
Locus Name:
GeneID:
Location:

GeneID:1237
TrivialName: PA14_44770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44770
PAO1 Ortholog Locus:PA1521
Sequence Length:1305
Protein Length:434
Start: 3990271
Stop: 3991575
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04910.1|AE004580_10 (AE004580) probable guanine deaminase [Pseudomonas aeruginosa PAO1]
Identities = 430/434 (99%), Positives = 431/434 (99%)
Sequence:
ATGACCCGCAACGCCAAAGCCTACCGCGCCGCCATCCTGCACAGCATCGCCGACCCCGCGGAGGTCGGCGTC
GAACGCTCCTACGAATACTTCGAGGACGGCCTGTTGCTGGTGGAGGACGGCAAGGTCGCTCGCCTCGGTGAC
GCCGAAGCCCTGCTCGGCGAGATCGGCGACGTCGAGGTCTTCGAGTACCGCGACGCGCTGATCACCCCCGGC
TTCATCGATACCCACATCCATTTCCCGCAGACCGGGATGATCGCCTCCTACGGCGAACAACTGCTGGACTGG
CTGAACACCTATACCTTCCCCACCGAGCGCCAATTCAGTGACCAGGCCCATGCCGACCAGGTCGCCGAGATC
TTCCTGCAGGAACTGCTGCGCAACGGCACTACCACCGCGCTGGTCTTCGGCAGCGTGCACCGGCAGTCGGTG
GAATCGCTGTTCGAGGCCGCCCGGCGCCTGGACCTGCGCCTGATCGCCGGCAAGGTGATGATGGACCGCAAC
GCGCCAGACTACCTGACCGACACCGCCGAGAGCAGCTACCGCGACAGCAAGGCGCTGATCGAGCGCTGGCAC
GGCCAGGGCCGTCTGCTCTACGCAGTGACCCCGCGCTTCGCCCCGACCAGCACCGCGGAACAGCTGGACATG
GCGGCGCGGCTGCTGCGCGAGCATCCCGGCGTATACCTGCACACCCACCTGTCGGAGAACCTCAAGGAAATC
GAGTGGGTGAAGGAGCTGTTCCCCGAGCGCAGCGGCTACCTGGACGTCTACGACCACCACGGCCTGCTTGGG
CCGCGCTCGGTGTTCGCCCATGGCGTGCACCTGTGCGACGGCGAATGCCAGCGCCTGGCGGAGACTGGCTCG
GCGGTGGCGTTCTGCCCAACCTCCAACCTGTTCCTCGGCAGCGGTCTGTTCGACTTGCCGAAGCTGGAGCGC
TACAAGGTCAAGGTCGGCCTCGGCACCGATGTCGGCGCCGGCACTAGCTTCTCCCAGCTGCAGTCCCTGAAC
GAGGCGTACAAGGTCATGCAGTTGCAGGGCGCCCGCCTCGATCCGTTCAAGTCGCTCTACCTCGCCACCCTC
GGCGGCGCCCGTGCGCTGGAGCTGGACGACCGGATCGGCAGCTTCGCCACCGGCAACGAGGCGGACTTCGTG
GTCCTCGACTACCACGCCACCCCGCTGCTCTCCTACCGCCTGAGCCAGGCCGGCAGCCTGGCCGAACGGCTG
TTCGCGCTGACCATCCTCGGCGACGACCGCACGGTGAAGGAAACCTTCGCCGCCGGTCGCTCGGTGCATCGC
CGCGACTGA
Translation:
MTRNAKAYRAAILHSIADPAEVGVERSYEYFEDGLLLVEDGKVARLGDAEALLGEIGDVEVFEYRDALITPG
FIDTHIHFPQTGMIASYGEQLLDWLNTYTFPTERQFSDQAHADQVAEIFLQELLRNGTTTALVFGSVHRQSV
ESLFEAARRLDLRLIAGKVMMDRNAPDYLTDTAESSYRDSKALIERWHGQGRLLYAVTPRFAPTSTAEQLDM
AARLLREHPGVYLHTHLSENLKEIEWVKELFPERSGYLDVYDHHGLLGPRSVFAHGVHLCDGECQRLAETGS
AVAFCPTSNLFLGSGLFDLPKLERYKVKVGLGTDVGAGTSFSQLQSLNEAYKVMQLQGARLDPFKSLYLATL
GGARALELDDRIGSFATGNEADFVVLDYHATPLLSYRLSQAGSLAERLFALTILGDDRTVKETFAAGRSVHR
RD*
AnnotationID:1246GeneID:1237
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 17:05:46
Gene Name:
Confidence Code:3
GeneProduct:probable guanine deaminase
Cell Localization:()
Synonyms:gda1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0402, KOG3968
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Purine metabolism.
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17014




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1521_CDS.cgi


    		




 
URL:

















    ReferenceID:19620




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1237
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2251
                           PA1521_tr
                           translation of PA1521
                           434
                           99.07
                           99.30
                           0
                           2215.0
     

     
     
73746
                           gb|AAG04910.1|AE004580_10
                           (AE004580) probable guanine deaminase [Pseudomonas aeruginosa PAO1]
                           434
                           99.07
                           99.30
                           0
                           2215.0
     

     
     
73747
                           gb|AAN69861.1|AE016625_4
                           (AE016790) guanine aminohydrolase [Pseudomonas putida KT2440]
                           435
                           78.39
                           87.35
                           2
                           1781.0
     

     
     
73748
                           gb|AAO57132.1|
                           (AE016869) guanine aminohydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           437
                           74.14
                           83.75
                           3
                           1697.0
     

     
     
73755
                           gb|AAK24585.1|
                           (AE005929) chlorohydrolase [Caulobacter crescentus CB15]
                           434
                           59.90
                           71.88
                           6
                           1264.0
     

     






      

          
GC ORFID: 44239How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1521Glimmer Score: 

          
Start: 963638Stop: 962334

          
Length: 1305


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1521 translation of PA1521Homolog Bit Score 857.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene585 (ORF: BLASTX 657.0), t_PA1521 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGCAACGCCAAAGCCTACCGCGCCGCCATCCTGCACAGCATCGCCGACCCCGCGGAGGTCGGCGTC 
GAACGCTCCTACGAATACTTCGAGGACGGCCTGTTGCTGGTGGAGGACGGCAAGGTCGCTCGCCTCGGTGAC 
GCCGAAGCCCTGCTCGGCGAGATCGGCGACGTCGAGGTCTTCGAGTACCGCGACGCGCTGATCACCCCCGGC 
TTCATCGATACCCACATCCATTTCCCGCAGACCGGGATGATCGCCTCCTACGGCGAACAACTGCTGGACTGG 
CTGAACACCTATACCTTCCCCACCGAGCGCCAATTCAGTGACCAGGCCCATGCCGACCAGGTCGCCGAGATC 
TTCCTGCAGGAACTGCTGCGCAACGGCACTACCACCGCGCTGGTCTTCGGCAGCGTGCACCGGCAGTCGGTG 
GAATCGCTGTTCGAGGCCGCCCGGCGCCTGGACCTGCGCCTGATCGCCGGCAAGGTGATGATGGACCGCAAC 
GCGCCAGACTACCTGACCGACACCGCCGAGAGCAGCTACCGCGACAGCAAGGCGCTGATCGAGCGCTGGCAC 
GGCCAGGGCCGTCTGCTCTACGCAGTGACCCCGCGCTTCGCCCCGACCAGCACCGCGGAACAGCTGGACATG 
GCGGCGCGGCTGCTGCGCGAGCATCCCGGCGTATACCTGCACACCCACCTGTCGGAGAACCTCAAGGAAATC 
GAGTGGGTGAAGGAGCTGTTCCCCGAGCGCAGCGGCTACCTGGACGTCTACGACCACCACGGCCTGCTTGGG 
CCGCGCTCGGTGTTCGCCCATGGCGTGCACCTGTGCGACGGCGAATGCCAGCGCCTGGCGGAGACTGGCTCG 
GCGGTGGCGTTCTGCCCAACCTCCAACCTGTTCCTCGGCAGCGGTCTGTTCGACTTGCCGAAGCTGGAGCGC 
TACAAGGTCAAGGTCGGCCTCGGCACCGATGTCGGCGCCGGCACTAGCTTCTCCCAGCTGCAGTCCCTGAAC 
GAGGCGTACAAGGTCATGCAGTTGCAGGGCGCCCGCCTCGATCCGTTCAAGTCGCTCTACCTCGCCACCCTC 
GGCGGCGCCCGTGCGCTGGAGCTGGACGACCGGATCGGCAGCTTCGCCACCGGCAACGAGGCGGACTTCGTG 
GTCCTCGACTACCACGCCACCCCGCTGCTCTCCTACCGCCTGAGCCAGGCCGGCAGCCTGGCCGAACGGCTG 
TTCGCGCTGACCATCCTCGGCGACGACCGCACGGTGAAGGAAACCTTCGCCGCCGGTCGCTCGGTGCATCGC 
CGCGACTGA