ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1236

TrivialName: PA14_50770

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_50770

PAO1 Ortholog Locus: PA1051

Sequence Length: 1359

Protein Length: 452

Start: 4511615

Stop: 4510257

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04440.1|AE004537_5 (AE004537) probable transporter [Pseudomonas aeruginosa PAO1] Identities = 452/452 (100%), Positives = 452/452 (100%)

Sequence:

ATGACCCTGGTCCTGATCCTGCTGGCGTTGATCGCCTTTATCGTCCTGTCCACCACGCGACTCAAGCTGCAC
CCGTTCCTCGCCCTGCTGGCGGCCGCGCTGATCGCCGGCTTCGCCTACCAGGTACCCACGGCGGAAATCGTC
AAGACCGTTACCGGCGGCTTCGGCAGCATCCTCGGCTACATCGGCATCGTCATCGTGCTCGGCACCATCATC
GGGGTGATCCTCGAGCGCAGCGGTGCGGCGATCACCATGGCGGAAAGCGTGATCCGCCTGCTCGGCGAACGC
TTCCCGACCCTGACCATGTCGATCATCGGCTACCTGGTGTCGATCCCGGTGTTCTGCGATTCCGGCTTCGTC
ATCCTCAACTCGCTGAAGAACGCCCTGGCGGCGCGGATGAAGATATCCACCATCGCCATGAGCGTGGCCCTG
GCCACCGGTCTCTACGCCACCCACACCTTCGTGCCGCCGACCCCGGGACCGATCGCCGCGGCCGGCAACCTC
GGCCTGGACGCCAGCCTTGGCCTGGTGATCGTGGTCGGCCTGGTGGTCGCCTTCGTCACCGCGATGGCCGGC
ATGTGGTGGGCCAATCGCTTCGTCGGCAAGGACATTCCCCTGGTCGACGACGGCCAGGTCGTCCAGACCGAA
GAGGATTTCAGCGAGCTGCGTGCCCGCTACGGCAAGCTGCCCAGCGCGACCCAGGCGTTCGCGCCGATCTTC
GTACCGATCCTGTTGATCTGCCTTGGCTCGGTCGCGGTATTCCCGAGCAAGCCGCTGGGCGAGGGCGTACTG
TTCGCCTGCCTGAACTTCCTCGGTCAACCGGTGATCGCCCTGCTGGTCGGCCTGGCCCTGGCCTGCACCCTG
CTCAAGGGCCAGAGCAAGCGCGAGGAGTTCCATGAGCGCGTGGTGGAAGGCATCCAGTCGGCCGCGCCGATC
CTGCTGATCACCGGCGCCGGCGGCGCCTTCGGTGCGATGCTGAAGATCACTCCGCTCGGCGACTACCTGGGC
AGCACCCTGTCCGCGTTGGGCATCGGCCTGTTCATGCCGTTCGTGGTGGCGGCCGCGCTGAAGACCGCACAG
GGCTCGACCACCGTGGCGCTGGTCACCACCTCGGCGCTGGTCGCTCCGCTGCTGCCGCAGCTCGGCCTGGAC
AGCGAGATGGGCCGGGTGCTGACGGTCATGGCGATCGGTGCCGGGGCGATGACGGTGTCCCACGCCAATGAC
AGCTTCTTCTGGGTGGTCACCCAGTTCAGCCGCATGACCGTATCCACTGCCTATCGCGCCCAGACCCTGGCG
ACCCTGGTCCAGGGTATCGCCGGTATGCTCGCGGTATGGCTGCTCAGCCTTGTGCTGCTCTGA

Translation:

MTLVLILLALIAFIVLSTTRLKLHPFLALLAAALIAGFAYQVPTAEIVKTVTGGFGSILGYIGIVIVLGTII
GVILERSGAAITMAESVIRLLGERFPTLTMSIIGYLVSIPVFCDSGFVILNSLKNALAARMKISTIAMSVAL
ATGLYATHTFVPPTPGPIAAAGNLGLDASLGLVIVVGLVVAFVTAMAGMWWANRFVGKDIPLVDDGQVVQTE
EDFSELRARYGKLPSATQAFAPIFVPILLICLGSVAVFPSKPLGEGVLFACLNFLGQPVIALLVGLALACTL
LKGQSKREEFHERVVEGIQSAAPILLITGAGGAFGAMLKITPLGDYLGSTLSALGIGLFMPFVVAAALKTAQ
GSTTVALVTTSALVAPLLPQLGLDSEMGRVLTVMAIGAGAMTVSHANDSFFWVVTQFSRMTVSTAYRAQTLA
TLVQGIAGMLAVWLLSLVLL*

AnnotationID:1245 GeneID:1236

AnnotatorUID: danlee

Modification Date/Time: 2004-05-19 14:02:54

Gene Name:

Confidence Code: 3

GeneProduct: probable transporter

Cell Localization: ()

Synonyms: PA1051

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2610, pfam02447

Secondary Functional Category(ies): Membrane proteins

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2610, GntT, H+/gluconate symporter and related permeases. Score: 288, 8e-79
pfam02447, GntP_permease, GntP family permease. Score: 242, 7e-65

Genomic Context:

Comment:

ReferenceID:2475

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19618

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1236

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2250 PA1051_tr translation of PA1051 452 99.99 99.99 0 2214.0

73741 gb|AAG04440.1|AE004537_5 (AE004537) probable transporter [Pseudomonas aeruginosa PAO1] 452 99.99 99.99 0 2214.0

73742 gb|AAF96801.1| (AE004418) permease [Vibrio cholerae O1 biovar eltor str. N16961] 452 73.67 85.39 2 1663.0

73743 dbj|BAC61459.1| (AP005084) permease [Vibrio parahaemolyticus] 452 73.23 86.06 2 1663.0

73744 gb|AAN54825.1|AE015621_3 (AE015621) permease, GntP family [Shewanella oneidensis MR-1] 456 70.61 84.86 8 1616.0

GC ORFID: `44238`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1051`	Glimmer Score:
Start: `442293`	Stop: `443651`
Length: `1359`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1051 translation of PA1051`	Homolog Bit Score `857.0`
Other Homologs: `t_PA1051 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCCTGGTCCTGATCCTGCTGGCGTTGATCGCCTTTATCGTCCTGTCCACCACGCGACTCAAGCTGCAC CCGTTCCTCGCCCTGCTGGCGGCCGCGCTGATCGCCGGCTTCGCCTACCAGGTACCCACGGCGGAAATCGTC AAGACCGTTACCGGCGGCTTCGGCAGCATCCTCGGCTACATCGGCATCGTCATCGTGCTCGGCACCATCATC GGGGTGATCCTCGAGCGCAGCGGTGCGGCGATCACCATGGCGGAAAGCGTGATCCGCCTGCTCGGCGAACGC TTCCCGACCCTGACCATGTCGATCATCGGCTACCTGGTGTCGATCCCGGTGTTCTGCGATTCCGGCTTCGTC ATCCTCAACTCGCTGAAGAACGCCCTGGCGGCGCGGATGAAGATATCCACCATCGCCATGAGCGTGGCCCTG GCCACCGGTCTCTACGCCACCCACACCTTCGTGCCGCCGACCCCGGGACCGATCGCCGCGGCCGGCAACCTC GGCCTGGACGCCAGCCTTGGCCTGGTGATCGTGGTCGGCCTGGTGGTCGCCTTCGTCACCGCGATGGCCGGC ATGTGGTGGGCCAATCGCTTCGTCGGCAAGGACATTCCCCTGGTCGACGACGGCCAGGTCGTCCAGACCGAA GAGGATTTCAGCGAGCTGCGTGCCCGCTACGGCAAGCTGCCCAGCGCGACCCAGGCGTTCGCGCCGATCTTC GTACCGATCCTGTTGATCTGCCTTGGCTCGGTCGCGGTATTCCCGAGCAAGCCGCTGGGCGAGGGCGTACTG TTCGCCTGCCTGAACTTCCTCGGTCAACCGGTGATCGCCCTGCTGGTCGGCCTGGCCCTGGCCTGCACCCTG CTCAAGGGCCAGAGCAAGCGCGAGGAGTTCCATGAGCGCGTGGTGGAAGGCATCCAGTCGGCCGCGCCGATC CTGCTGATCACCGGCGCCGGCGGCGCCTTCGGTGCGATGCTGAAGATCACTCCGCTCGGCGACTACCTGGGC AGCACCCTGTCCGCGTTGGGCATCGGCCTGTTCATGCCGTTCGTGGTGGCGGCCGCGCTGAAGACCGCACAG GGCTCGACCACCGTGGCGCTGGTCACCACCTCGGCGCTGGTCGCTCCGCTGCTGCCGCAGCTCGGCCTGGAC AGCGAGATGGGCCGGGTGCTGACGGTCATGGCGATCGGTGCCGGGGCGATGACGGTGTCCCACGCCAATGAC AGCTTCTTCTGGGTGGTCACCCAGTTCAGCCGCATGACCGTATCCACTGCCTATCGCGCCCAGACCCTGGCG ACCCTGGTCCAGGGTATCGCCGGTATGCTCGCGGTATGGCTGCTCAGCCTTGTGCTGCTCTGA