ViewGene

Locus Name:
GeneID:
Location:

GeneID:1235
TrivialName: PA14_00180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00180
PAO1 Ortholog Locus:PA0017
Sequence Length:1305
Protein Length:434
Start: 20093
Stop: 18789
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03407.1|AE004441_8 (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 429/434 (98%), Positives = 430/434 (99%)
Sequence:
ATGAACCCGCGTCTCGCCGCCTGCCAGGCACTGGCCGCGGTGCTCGCCGGACGCGCCTCGCTGTCTGGCGCG
TTGCCGCCGCAACTGGACAAGGTCGCCCCGCGCGATCGCGGCCTGACCCAGGAGCTGGCCTTCGGCGCGGCG
CGCTGGCAACCGCGCCTGCAGGCCCTGGCCGCGCGCCTGTTGCAGAAGCCGTTCAAGGCCGCCGACACCGAT
ATCCACGCCCTGCTGCTGATCGGCCTCTACCAGTTGCTCTACACGCGGATTCCGCCGCACGCCGCGATCGGC
GAGACCGTCGGCTGCGCCGACAAGCTGAAGAAGGGCTGGGCCAAGGGCGTGCTCAACGCCGTGCTGCGCCGC
GCGCAGCGCGAAGGCGAGACGCTGCTGGCCGAGGTCGACCGCGATCCCTCGGCGCGCCTGGGCCATCCGCGC
TGGCTGCTGAAAGCGCTCAAGCAGGCCTGGCCGGAGCAACTCGACACGCTCTGCGCGGCGAACAACGCACAC
CCGCCGATGACCTTGCGGGTCAATCGGCGCCACGGCGAGCGCGATGCCTACCTGGCCGAACTCGCCGAAGCC
GGGATCGAGGCCCGCGCCTGCGACTACAGCCGCGACGGCATCCAGCTCGCCGCGCCGCGCGACGTACGCGAA
CTACCGGGCTTCGCGGAGGGCCGCGTCAGCGTCCAGGACGAAGCCACGCAACTGGCCGCCGAGCTGCTCGAA
AGCGCGCCCGGCCAGCGTGTCCTCGACGCCTGCTGTGCGCCTGGCGGCAAGACCTGCCACCTGCTGGAAACC
CAGCCGGGACTGGCCGAAGTGGTCGCCGTCGACCTCGAGGAGAGCCGCCTGGTAAGGGTTCGGGAAAACCTC
CAGCGGCTCGGCCTGCAAGCCAGCCTGGTCGCCGCCGACGCCAGGGCCACCGGGGAGTGGTGGGACGGCAAG
CCGTTCCAGCGCATCCTCCTCGACGCGCCGTGCTCGGCCACCGGGGTGATCCGCCGCCACCCGGACATCAAG
CTGGCGCGCAAGCCGGAAGACATCGCCGCCCTGGCGCACCTGCAAGGTGAATTGCTCGACGCACTGTGGCCT
ACCCTGGAAGTCGGCGGCGTGCTGCTCTATGCCACCTGTTCGGTGATGCCGGCGGAAAACAGCGACAGCATC
GCCGCCTTCCTTGCCCGTACGCCCGGCGCCCGCGAACTGGACCTTCCCGGCCCCTGGGGCATGAAACAGCCC
CACGGCCGCCAGTTGTTGCCGCAGGTGGAAGGCCACGATGGCTTCTACTATGCCAAGCTGATCAAGATATCC
GCCCGTTGA
Translation:
MNPRLAACQALAAVLAGRASLSGALPPQLDKVAPRDRGLTQELAFGAARWQPRLQALAARLLQKPFKAADTD
IHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKGWAKGVLNAVLRRAQREGETLLAEVDRDPSARLGHPR
WLLKALKQAWPEQLDTLCAANNAHPPMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRE
LPGFAEGRVSVQDEATQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENL
QRLGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGELLDALWP
TLEVGGVLLYATCSVMPAENSDSIAAFLARTPGARELDLPGPWGMKQPHGRQLLPQVEGHDGFYYAKLIKIS
AR*
AnnotationID:1244GeneID:1235
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative tRNA and rRNA cytosine-C5-methylases
Cell Localization:()
Synonyms:sun
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:putative sun protein
Functional Category Confidence Code:5
COGs:COG0144,pfam01189
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53733.1| (AE016856) sun protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 448

 Score =  671 bits (1731), Expect = 0.0
 Identities = 335/439 (76%), Positives = 371/439 (84%), Gaps = 5/439 (1%)

>gb|AAN65700.1|AE016196_11 (AE016774) sun protein [Pseudomonas putida KT2440]
          Length = 436

 Score =  670 bits (1728), Expect = 0.0
 Identities = 335/433 (77%), Positives = 365/433 (84%)

>dbj|BAC61307.1| (AP005083) Sun protein [Vibrio parahaemolyticus]
          Length = 427

 Score =  407 bits (1046), Expect = e-113
 Identities = 221/433 (51%), Positives = 279/433 (64%), Gaps = 6/433 (1%)
Structural Features:
COG0144, Sun, tRNA and rRNA cytosine-C5-methylases 
[Translation, ribosomal structure and biogenesis]
CD-Length = 355 residues, 100.0% aligned
Score =  310 bits (796), Expect = 2e-85
Identities = 159/356 (44%), Positives = 204/356 (57%), Gaps = 13/356 (3%)

pfam01189, Nol1_Nop2_Sun, NOL1/NOP2/sun family.
CD-Length = 278 residues, 100.0% aligned
Score =  225 bits (575), Expect = 7e-60
Identities = 118/278 (42%), Positives = 147/278 (52%), Gaps = 9/278 (3%)
Genomic Context:
Comment:
ReferenceID:2473
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19616
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33378
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1235_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1235

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2249 PA0017_tr translation of PA0017 434 98.84 99.07 0 2218.0
73696 gb|AAG03407.1|AE004441_8 (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 434 98.84 99.07 0 2218.0
73698 gb|AAN65700.1|AE016196_11 (AE016774) sun protein [Pseudomonas putida KT2440] 436 76.83 83.71 2 1727.0
73697 gb|AAO53733.1| (AE016856) sun protein [Pseudomonas syringae pv. tomato str. DC3000] 448 74.77 82.81 14 1735.0
73699 dbj|BAC61307.1| (AP005083) Sun protein [Vibrio parahaemolyticus] 434 51.15 64.51 7 1054.0
GC ORFID: 44237How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0017Glimmer Score:
Start: 5821430Stop: 5820126
Length: 1305
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0017 translation of PA0017Homolog Bit Score 858.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4100 (ORF: BLASTX 664.0), t_PA0017 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCCGCGTCTCGCCGCCTGCCAGGCACTGGCCGCGGTGCTCGCCGGACGCGCCTCGCTGTCTGGCGCG
TTGCCGCCGCAACTGGACAAGGTCGCCCCGCGCGATCGCGGCCTGACCCAGGAGCTGGCCTTCGGCGCGGCG
CGCTGGCAACCGCGCCTGCAGGCCCTGGCCGCGCGCCTGTTGCAGAAGCCGTTCAAGGCCGCCGACACCGAT
ATCCACGCCCTGCTGCTGATCGGCCTCTACCAGTTGCTCTACACGCGGATTCCGCCGCACGCCGCGATCGGC
GAGACCGTCGGCTGCGCCGACAAGCTGAAGAAGGGCTGGGCCAAGGGCGTGCTCAACGCCGTGCTGCGCCGC
GCGCAGCGCGAAGGCGAGACGCTGCTGGCCGAGGTCGACCGCGATCCCTCGGCGCGCCTGGGCCATCCGCGC
TGGCTGCTGAAAGCGCTCAAGCAGGCCTGGCCGGAGCAACTCGACACGCTCTGCGCGGCGAACAACGCACAC
CCGCCGATGACCTTGCGGGTCAATCGGCGCCACGGCGAGCGCGATGCCTACCTGGCCGAACTCGCCGAAGCC
GGGATCGAGGCCCGCGCCTGCGACTACAGCCGCGACGGCATCCAGCTCGCCGCGCCGCGCGACGTACGCGAA
CTACCGGGCTTCGCGGAGGGCCGCGTCAGCGTCCAGGACGAAGCCACGCAACTGGCCGCCGAGCTGCTCGAA
AGCGCGCCCGGCCAGCGTGTCCTCGACGCCTGCTGTGCGCCTGGCGGCAAGACCTGCCACCTGCTGGAAACC
CAGCCGGGACTGGCCGAAGTGGTCGCCGTCGACCTCGAGGAGAGCCGCCTGGTAAGGGTTCGGGAAAACCTC
CAGCGGCTCGGCCTGCAAGCCAGCCTGGTCGCCGCCGACGCCAGGGCCACCGGGGAGTGGTGGGACGGCAAG
CCGTTCCAGCGCATCCTCCTCGACGCGCCGTGCTCGGCCACCGGGGTGATCCGCCGCCACCCGGACATCAAG
CTGGCGCGCAAGCCGGAAGACATCGCCGCCCTGGCGCACCTGCAAGGTGAATTGCTCGACGCACTGTGGCCT
ACCCTGGAAGTCGGCGGCGTGCTGCTCTATGCCACCTGTTCGGTGATGCCGGCGGAAAACAGCGACAGCATC
GCCGCCTTCCTTGCCCGTACGCCCGGCGCCCGCGAACTGGACCTTCCCGGCCCCTGGGGCATGAAACAGCCC
CACGGCCGCCAGTTGTTGCCGCAGGTGGAAGGCCACGATGGCTTCTACTATGCCAAGCTGATCAAGATATCC
GCCCGTTGA