ViewGene
Locus Name:
GeneID:
Location:

GeneID:1234
TrivialName: PA14_09740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09740
PAO1 Ortholog Locus:PA4187
Sequence Length:1329
Protein Length:442
Start: 838993
Stop: 837665
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07574.1|AE004835_3 (AE004835) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 441/442 (99%), Positives = 441/442 (99%)
Sequence:
ATGACAAATCCTACGACCTCGATCGAAGACGTACCCCTCAACGCCTTCCACCGGCTGTTGACCCTGCGCTCC
GGCGGCGGCTCCTTCGTCGACGGCTACGTGCTGAGCATCATCGGCGTGGCGATGCTGCAGATGACCGCGGCA
TTGCAACTGAGCAGTTTCTGGCAGGGCATGATCGCCGCCTCGGCGCTGGTCGGCATCTTCTTCGGCGGTTTC
CTCGGCGGCTGGCTGACCGACCGCCTGGGCCGCCGCAGGCTGTTCTTCGTCGGCCCCAGCCTGTTCGTCCTC
GCTTCCCTGGCGCAGTACGGGGTCGACTCGGCGGCGGCGCTGTTCGTCCTGCGCTTCCTGATCGGCGTGGCG
GTGGGCATCGAGTACCCGGTCGCCACCGCCTTGCTGGTGGAGTTCCTGCCGAAGAAGTATCGCGGACCGCGC
CTGGCCACCCTGACCATCCTCTGGTTCGCCGGCGCCGCCTTCGCCTACCTGGTCGGCGACCTGATCCTGCGC
AGCGGCGGCGAGGACGCCTGGCGCCTGGTACTGGCCAGCACCGCGGCGATCGGCGCCGTGCTGTTCCTGCTA
CGCATCGGCACCCCCGAGTCGCCGCGCTGGCTGCTGAGCAAGGGCCGCGACGCGGACGCAGAACGGGTCATC
CGCCAGGTCTACGGCGAAGCCTTCTCGCTGGCGAACCTGCCCGAACAGGCGCTGGAACGGAAGGTCACCATC
TGGCACCTGCTCTACGCCGGCTACGGCAAGCGCATGCTCTTCGTCACCCTGTTCTGGACCTGCTCGGTGATC
CCCGTGTTCGCCGTCTACGCCTTCGCGCCCAAGGTGCTGCTGGCGCTGAACCTGAAGGGCGACTGGGCCTCC
TACGGTTCGGTGGCGATCACCCTGCTGTTCGTCATCGGCTGCATCATCGCCACCCGCCTGATCAACCGCATC
GGCCGGCGCTGCATGCTGCTGCACAGCTTCCTCTGGTCCGGCCTGGCGCTGCTCGGGCTGGGCGTCTTCCAC
GCCGGCTCGGAGGCGACCATCCTCGGCCTGTTCGGTGCCTACGCGCTGTTCATCGGCGGCGCCCAGGTGCTG
CAACTGGTCTACCCGAACGAACTGTTCCCCACCGAGATCCGCGCCTTCGCGGTCGGCGTCGGCACCTCGTTG
TCGCGCGTCGGCGCCGCGGTGGGCACCTACCTGGTGCCGCTTTCCCTGGAAACCCTGGGTACCGCCCAGACC
ATGTACGCCGCCGCGCTGGTGACCCTGCTCGGGCTGCTCGTGACCTGGGCCCTGGCGCCGGAAACCCGTTCG
CTGAACCTGCAGCAGGCGGCTTCGCTCACCTGA
Translation:
MTNPTTSIEDVPLNAFHRLLTLRSGGGSFVDGYVLSIIGVAMLQMTAALQLSSFWQGMIAASALVGIFFGGF
LGGWLTDRLGRRRLFFVGPSLFVLASLAQYGVDSAAALFVLRFLIGVAVGIEYPVATALLVEFLPKKYRGPR
LATLTILWFAGAAFAYLVGDLILRSGGEDAWRLVLASTAAIGAVLFLLRIGTPESPRWLLSKGRDADAERVI
RQVYGEAFSLANLPEQALERKVTIWHLLYAGYGKRMLFVTLFWTCSVIPVFAVYAFAPKVLLALNLKGDWAS
YGSVAITLLFVIGCIIATRLINRIGRRCMLLHSFLWSGLALLGLGVFHAGSEATILGLFGAYALFIGGAQVL
QLVYPNELFPTEIRAFAVGVGTSLSRVGAAVGTYLVPLSLETLGTAQTMYAAALVTLLGLLVTWALAPETRS
LNLQQAASLT*
AnnotationID:1243GeneID:1234
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 09:09:56
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:yaaU
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15819.1| (AL646068) PROBABLE METABOLITE TRANSPORT TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 442

 Score =  635 bits (1638), Expect = 0.0
 Identities = 319/436 (73%), Positives = 378/436 (86%)

>gb|AAN78551.1|AE016755_51 (AE016755) Hypothetical metabolite transport protein yaaU
           [Escherichia coli CFT073]
          Length = 443

 Score =  308 bits (789), Expect = 4e-83
 Identities = 170/440 (38%), Positives = 260/440 (59%), Gaps = 7/440 (1%)

>gb|AAP15588.1| (AE016978) putative transport protein [Shigella flexneri 2a str.
           2457T]
          Length = 464

 Score =  308 bits (788), Expect = 6e-83
 Identities = 169/440 (38%), Positives = 261/440 (59%), Gaps = 7/440 (1%)






 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  97.3% aligned
Score =  153 bits (387), Expect = 6e-38
Identities = 102/436 (23%), Positives = 176/436 (40%), Gaps = 25/436 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2471




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19614




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36896




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1234_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1234
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2248
                           PA4187_tr
                           translation of PA4187
                           442
                           99.77
                           99.77
                           0
                           2218.0
     

     
     
73693
                           gb|AAG07574.1|AE004835_3
                           (AE004835) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           442
                           99.77
                           99.77
                           0
                           2218.0
     

     
     
73694
                           emb|CAD15819.1|
                           (AL646068) PROBABLE METABOLITE TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           443
                           72.46
                           85.77
                           2
                           1639.0
     

     
     
73695
                           dbj|BAB96613.1|
                           (D10483) Hypothetical protein [Escherichia coli]
                           451
                           19.51
                           28.15
                           240
                           386.0
     

     






      

          
GC ORFID: 44236How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4187Glimmer Score: 

          
Start: 4114944Stop: 4116272

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4187 translation of PA4187Homolog Bit Score 858.0

          
Other Homologs:  t_PA4187 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAAATCCTACGACCTCGATCGAAGACGTACCCCTCAACGCCTTCCACCGGCTGTTGACCCTGCGCTCC 
GGCGGCGGCTCCTTCGTCGACGGCTACGTGCTGAGCATCATCGGCGTGGCGATGCTGCAGATGACCGCGGCA 
TTGCAACTGAGCAGTTTCTGGCAGGGCATGATCGCCGCCTCGGCGCTGGTCGGCATCTTCTTCGGCGGTTTC 
CTCGGCGGCTGGCTGACCGACCGCCTGGGCCGCCGCAGGCTGTTCTTCGTCGGCCCCAGCCTGTTCGTCCTC 
GCTTCCCTGGCGCAGTACGGGGTCGACTCGGCGGCGGCGCTGTTCGTCCTGCGCTTCCTGATCGGCGTGGCG 
GTGGGCATCGAGTACCCGGTCGCCACCGCCTTGCTGGTGGAGTTCCTGCCGAAGAAGTATCGCGGACCGCGC 
CTGGCCACCCTGACCATCCTCTGGTTCGCCGGCGCCGCCTTCGCCTACCTGGTCGGCGACCTGATCCTGCGC 
AGCGGCGGCGAGGACGCCTGGCGCCTGGTACTGGCCAGCACCGCGGCGATCGGCGCCGTGCTGTTCCTGCTA 
CGCATCGGCACCCCCGAGTCGCCGCGCTGGCTGCTGAGCAAGGGCCGCGACGCGGACGCAGAACGGGTCATC 
CGCCAGGTCTACGGCGAAGCCTTCTCGCTGGCGAACCTGCCCGAACAGGCGCTGGAACGGAAGGTCACCATC 
TGGCACCTGCTCTACGCCGGCTACGGCAAGCGCATGCTCTTCGTCACCCTGTTCTGGACCTGCTCGGTGATC 
CCCGTGTTCGCCGTCTACGCCTTCGCGCCCAAGGTGCTGCTGGCGCTGAACCTGAAGGGCGACTGGGCCTCC 
TACGGTTCGGTGGCGATCACCCTGCTGTTCGTCATCGGCTGCATCATCGCCACCCGCCTGATCAACCGCATC 
GGCCGGCGCTGCATGCTGCTGCACAGCTTCCTCTGGTCCGGCCTGGCGCTGCTCGGGCTGGGCGTCTTCCAC 
GCCGGCTCGGAGGCGACCATCCTCGGCCTGTTCGGTGCCTACGCGCTGTTCATCGGCGGCGCCCAGGTGCTG 
CAACTGGTCTACCCGAACGAACTGTTCCCCACCGAGATCCGCGCCTTCGCGGTCGGCGTCGGCACCTCGTTG 
TCGCGCGTCGGCGCCGCGGTGGGCACCTACCTGGTGCCGCTTTCCCTGGAAACCCTGGGTACCGCCCAGACC 
ATGTACGCCGCCGCGCTGGTGACCCTGCTCGGGCTGCTCGTGACCTGGGCCCTGGCGCCGGAAACCCGTTCG 
CTGAACCTGCAGCAGGCGGCTTCGCTCACCTGA