ViewGene
Locus Name:
GeneID:
Location:

GeneID:1232
TrivialName: PA14_23690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23690
PAO1 Ortholog Locus:PA3125
Sequence Length:1329
Protein Length:442
Start: 2060943
Stop: 2059615
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06513.1|AE004736_10 (AE004736) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 433/442 (97%), Positives = 437/442 (98%)
Sequence:
ATGAAACGACCCATCGAAAGACTTCCCGCCGCGACCTCCAGCGCAACCCGGGCCTTCGCGCTCGCAACGAGC
CTGTTGTACGCCTGCGCCGCGCCGGCCGCTTCCTGGACCGCCAGCTGGCAGGCCAGCCCGCAGCCGGTCTGG
GCTGAGGACTTCCTGTTTCCCAGCAACGTGCCGGCCGAACTGCACGACCAGACGGTGCGGCAACTGGCGCGA
ATCAGCCTGGGAGGAACGCGCGTGCGCATCGTCCTGGCAAATACCTATGGAAAGCGCCCGATCCGGATCGGC
CGGGCCACCCTGGCCAAACCGGGTTCCGAGCGCGCCGCGGTCGCCACCGGCAGCCGGCATGACGTGACCTTC
GGCGGACGCCGGACGGCGACCATCGCGCCCGGCGCCACGCTACTCAGCGATCCGGTGACGATGCCGGTGGCC
GCGCTCTCGCAGGTGCTGGTGAGTCTCTACCTGCCGGCCGCCACGCCCATGGAAACCTTCCACTGGGACGGC
CGCCAGACGGGCTGGATCGTCGCCGGCGAGCAGACCCAAAGCCACGCATTGCAGCTGGACGCGGCGGACAGC
CAGAGCACCACCGCGCGCCTGCTGTTGACAGGTATCCTGGTCGAAACCGAAACGGCAACGCGGACGCTGGTG
ACGCTCGGCGACTCGATCACCGACGGAGCCAGCGCCAGCCTCGACCGGAACAGCCGTTGGCCGGACTTCCTC
GCCGAACGCCTGGCCCCGCATGGCGTCGCCGTGGTCAATGCGGGGATTTCCGGCGCCCGTCTGCTGAGCGAC
GGCATGGGCGCGAGCGCGCTGGCACGTCTGGACCGCGACGTACTGGCCCAGCCAGGCGCAAGCAGCATGGTG
GTGATGCTCGGCATCAACGACATTGCCTGGCCCGGTACCGCTTTTGCCCGGAATGCCGCACCGCCCACCCTG
GAAGCGCTGATCGCCGGCTACCGGCAATTGATCGAACGGGCGCACAACCGGGGTATCCGGGTCGTCGGCGCG
ACCCTCACGCCGTTCGAGGGCGCACTGCCCGGCACGCCGTTGAGCGATTATTACCATCCCGCCAAGGAAGCC
CTGCGCAGGCAGGTTAACGAGTGGATCCGTCATGCCGGCGCCTTCGATGCGGTGATCGACTTCGACGCGGTA
TTGCGCGATCCGAAGCAGCCGTCGCGGCTCGCCGCGCGCTACGACTCCGGCGACCATCTGCACCCCAGCGAC
GAAGGCAACCGAGCGATGGCGGCCGCCATCGACCTCGACGTCCTGCTGGACGAGGTGCCTGACGGCACACCG
GCAGAGCCCCGGGCCGATAGCGCAACGAAATGA
Translation:
MKRPIERLPAATSSATRAFALATSLLYACAAPAASWTASWQASPQPVWAEDFLFPSNVPAELHDQTVRQLAR
ISLGGTRVRIVLANTYGKRPIRIGRATLAKPGSERAAVATGSRHDVTFGGRRTATIAPGATLLSDPVTMPVA
ALSQVLVSLYLPAATPMETFHWDGRQTGWIVAGEQTQSHALQLDAADSQSTTARLLLTGILVETETATRTLV
TLGDSITDGASASLDRNSRWPDFLAERLAPHGVAVVNAGISGARLLSDGMGASALARLDRDVLAQPGASSMV
VMLGINDIAWPGTAFARNAAPPTLEALIAGYRQLIERAHNRGIRVVGATLTPFEGALPGTPLSDYYHPAKEA
LRRQVNEWIRHAGAFDAVIDFDAVLRDPKQPSRLAARYDSGDHLHPSDEGNRAMAAAIDLDVLLDEVPDGTP
AEPRADSATK*
AnnotationID:1241GeneID:1232
AnnotatorUID: diggins
Modification Date/Time: 2005-09-18 18:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative secreted protein
Cell Localization:(8) Periplasmic
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative lysophospholipase
Functional Category Confidence Code:5
COGs:pfam00657,COG2755
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:3.1.1.5
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB50826.1| (AP003003) putative secreted protein [Mesorhizobium loti]
          Length = 426

 Score =  429 bits (1104), Expect = e-119
 Identities = 224/429 (52%), Positives = 285/429 (66%), Gaps = 10/429 (2%)

>dbj|BAC76460.1| (AB088224) putative secreted protein [Streptomyces rochei]
          Length = 426

 Score =  309 bits (791), Expect = 3e-83
 Identities = 185/418 (44%), Positives = 237/418 (56%), Gaps = 39/418 (9%)







 
Structural Features:
pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase.
CD-Length = 218 residues, 100.0% aligned
Score = 94.6 bits (234), Expect = 2e-20
Identities = 56/233 (24%), Positives = 83/233 (35%), Gaps = 44/233 (18%)

COG2755, TesA, Lysophospholipase L1 and related esterases 
[Amino acid transport and metabolism]
CD-Length = 216 residues,  94.4% aligned
Score =   99 bits (248), Expect = 4e-22
Identities = 64/217 (29%), Positives = 94/217 (43%), Gaps = 16/217 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19610




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32398




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1232_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1232
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2246
                           PA3125_tr
                           translation of PA3125
                           442
                           97.96
                           98.86
                           0
                           2216.0
     

     
     
73600
                           gb|AAG06513.1|AE004736_10
                           (AE004736) hypothetical protein PA3125 [Pseudomonas aeruginosa PAO1]
                           442
                           97.96
                           98.86
                           0
                           2216.0
     

     
     
73601
                           dbj|BAB50826.1|
                           (AP003003) putative secreted protein [Mesorhizobium loti]
                           448
                           50.44
                           64.06
                           28
                           1115.0
     

     
     
73602
                           dbj|BAC76460.1|
                           (AB088224) putative secreted protein [Streptomyces rochei]
                           475
                           40.84
                           52.00
                           82
                           826.0
     

     
     
73603
                           gb|AAM39436.1|
                           (AE012106) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           465
                           39.56
                           55.05
                           71
                           784.0
     

     






      

          
GC ORFID: 44234How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3125Glimmer Score: 

          
Start: 2892988Stop: 2894316

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3125 translation of PA3125Homolog Bit Score 858.0

          
Other Homologs:  t_PA3125 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGACCCATCGAAAGACTTCCCGCCGCGACCTCCAGCGCAACCCGGGCCTTCGCGCTCGCAACGAGC 
CTGTTGTACGCCTGCGCCGCGCCGGCCGCTTCCTGGACCGCCAGCTGGCAGGCCAGCCCGCAGCCGGTCTGG 
GCTGAGGACTTCCTGTTTCCCAGCAACGTGCCGGCCGAACTGCACGACCAGACGGTGCGGCAACTGGCGCGA 
ATCAGCCTGGGAGGAACGCGCGTGCGCATCGTCCTGGCAAATACCTATGGAAAGCGCCCGATCCGGATCGGC 
CGGGCCACCCTGGCCAAACCGGGTTCCGAGCGCGCCGCGGTCGCCACCGGCAGCCGGCATGACGTGACCTTC 
GGCGGACGCCGGACGGCGACCATCGCGCCCGGCGCCACGCTACTCAGCGATCCGGTGACGATGCCGGTGGCC 
GCGCTCTCGCAGGTGCTGGTGAGTCTCTACCTGCCGGCCGCCACGCCCATGGAAACCTTCCACTGGGACGGC 
CGCCAGACGGGCTGGATCGTCGCCGGCGAGCAGACCCAAAGCCACGCATTGCAGCTGGACGCGGCGGACAGC 
CAGAGCACCACCGCGCGCCTGCTGTTGACAGGTATCCTGGTCGAAACCGAAACGGCAACGCGGACGCTGGTG 
ACGCTCGGCGACTCGATCACCGACGGAGCCAGCGCCAGCCTCGACCGGAACAGCCGTTGGCCGGACTTCCTC 
GCCGAACGCCTGGCCCCGCATGGCGTCGCCGTGGTCAATGCGGGGATTTCCGGCGCCCGTCTGCTGAGCGAC 
GGCATGGGCGCGAGCGCGCTGGCACGTCTGGACCGCGACGTACTGGCCCAGCCAGGCGCAAGCAGCATGGTG 
GTGATGCTCGGCATCAACGACATTGCCTGGCCCGGTACCGCTTTTGCCCGGAATGCCGCACCGCCCACCCTG 
GAAGCGCTGATCGCCGGCTACCGGCAATTGATCGAACGGGCGCACAACCGGGGTATCCGGGTCGTCGGCGCG 
ACCCTCACGCCGTTCGAGGGCGCACTGCCCGGCACGCCGTTGAGCGATTATTACCATCCCGCCAAGGAAGCC 
CTGCGCAGGCAGGTTAACGAGTGGATCCGTCATGCCGGCGCCTTCGATGCGGTGATCGACTTCGACGCGGTA 
TTGCGCGATCCGAAGCAGCCGTCGCGGCTCGCCGCGCGCTACGACTCCGGCGACCATCTGCACCCCAGCGAC 
GAAGGCAACCGAGCGATGGCGGCCGCCATCGACCTCGACGTCCTGCTGGACGAGGTGCCTGACGGCACACCG 
GCAGAGCCCCGGGCCGATAGCGCAACGAAATGA