ViewGene
Locus Name:
GeneID:
Location:

GeneID:1231
TrivialName: PA14_11960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11960
PAO1 Ortholog Locus:PA4011
Sequence Length:1314
Protein Length:437
Start: 1034972
Stop: 1033659
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07398.1|AE004818_4 (AE004818) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 434/437 (99%), Positives = 436/437 (99%)
Sequence:
ATGAGTCTCGACAGCTTCAACGCCTGGATGGCCGCCAACCCCGAGTGGCTGGGGATGGCCATCTTCCTCATC
GCCTTCCTCGAATGCGCGGCCATCGTCGGCATCGTCCTGCCCGGCGTGGTGCTGCTGTTCGGCGTCGCGGTG
ATCGCCGGCAGCGGCGCCCTCAGCCTCGGCGAAACCCTGATGCTGGCCTACGCCGGCGGGGTGCTGGGCGAC
CTCAGCTCGTACTGGATCGGCCGCCGCTTCCACCAGAACATCCGCCGCCTGCCCGGCCTGCGCAGCCATCCG
CAGTGGATCACCGCCGCCGAGGTGTACTTCGAGCGCTACGGTATCGCCAGCCTGCTGGTCGGCCGCTTCATC
GGCGCCCTGCGACCGATGCTGCCGATGGTCGCCGGCATGCTCGACATGCCGTTCGGCCGTTTTCTCGGCGTT
TCGCTGATTGCCGCCGCCGGCTGGGCGGTCGCCTACCTGTTGCCCGGCTGGGCTACCGGCGCAGCCCTGCGC
CTGCCGTTGCCGGAAGGCTTCTGGAGCGAAGCCGGGATCGTCGCGGCCTGCCTGGCGGTGCTGGTCGGCGTG
GTAGTCCAGGCCAGCCTGCGACGCAAACGCTGGGCAACCGCTGTGGCGGCCGCGCTGAGCCTGGTCCTGCTG
CTGGCGATGACCGTCGCCTGGCCGTACCTCCAGGACCTCGACCAGGGCCTGATGACGCTGGTCCAGGAGCAT
CGCAACGCCGACCTGAACCCGGTGATGGTGGTGGTCACCCGGCTCGGCGATTTCCGCACCCAGTTCATCGCC
GGCGCGCTGCTCGGCGGTATCCTCCTGCTGACCCGGCAATGGCGTCCGGCCATCTTCGCCATCGGCACCCTG
GTGGGTACCGCGCTGGCCAACCAGACCCTGAAGACCCTGTTCGCCCGCGCCCGCCCGGAAGTGCTGGCCGAA
CCGCTGAGCAGCTTCAGCTTCCCCAGCGGACACAGCTCGGCGTCCTTCGCCTTCTTCCTCACCCTGGGCGTC
CTCGCCAGCCGCCAGCAACCGCCGCGCTGGCGCCTGACCTGGGTACTGCTGGCGGTGATCCCGTCGCTGAGC
ATCGCCCTGTCGCGGGTCTACCTTGGCGTGCACTGGCCGTCGGACATCGTCGCCGGCGCCCTGCTCGCCACT
ACGGTCTGCGCCGCCAGCCTGTGGCTGAGCCAGCGCCGCGAGTCGCTGCCGGCGCTGCCGCAACGGGTCTGG
TGGCTGCTGTTGCCGGTCTGCGTGGCGACCCTGGCGATCGCCGCCGGCTGGGCCCTGCCGGAAGCCATTGCG
CGCTACCGGCCGCTGTGA
Translation:
MSLDSFNAWMAANPEWLGMAIFLIAFLECAAIVGIVLPGVVLLFGVAVIAGSGALSLGETLMLAYAGGVLGD
LSSYWIGRRFHQNIRRLPGLRSHPQWITAAEVYFERYGIASLLVGRFIGALRPMLPMVAGMLDMPFGRFLGV
SLIAAAGWAVAYLLPGWATGAALRLPLPEGFWSEAGIVAACLAVLVGVVVQASLRRKRWATAVAAALSLVLL
LAMTVAWPYLQDLDQGLMTLVQEHRNADLNPVMVVVTRLGDFRTQFIAGALLGGILLLTRQWRPAIFAIGTL
VGTALANQTLKTLFARARPEVLAEPLSSFSFPSGHSSASFAFFLTLGVLASRQQPPRWRLTWVLLAVIPSLS
IALSRVYLGVHWPSDIVAGALLATTVCAASLWLSQRRESLPALPQRVWWLLLPVCVATLAIAAGWALPEAIA
RYRPL*
AnnotationID:1240GeneID:1231
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 12:12:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4011
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0586
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|10456 COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
Length = 208
Score =  126 bits (317), Expect = 1e-29
Identities = 68/208 (32%), Positives = 111/208 (53%), Gaps = 3/208 (1%)






   
Genomic Context:






   
Comment:
PAP2 family protein/DedA family protein


















    ReferenceID:2465




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19608




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1231
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2245
                           PA4011_tr
                           translation of PA4011
                           437
                           99.31
                           99.77
                           0
                           2219.0
     

     
     
73592
                           gb|AAG07398.1|AE004818_4
                           (AE004818) hypothetical protein PA4011 [Pseudomonas aeruginosa PAO1]
                           437
                           99.31
                           99.77
                           0
                           2219.0
     

     
     
73593
                           gb|AAN70382.1|AE016680_2
                           (AE016792) PAP2 family protein/DedA family protein [Pseudomonas putida KT2440]
                           439
                           66.28
                           79.49
                           3
                           1543.0
     

     
     
73594
                           gb|AAO58260.1|
                           (AE016873) PAP2 superfamily protein/DedA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           439
                           59.68
                           76.08
                           3
                           1412.0
     

     
     
73595
                           gb|AAN78577.1|AE016755_77
                           (AE016755) Hypothetical protein yabI [Escherichia coli CFT073]
                           449
                           19.37
                           30.51
                           207
                           311.0
     

     






      

          
GC ORFID: 44233How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4011Glimmer Score: 

          
Start: 3918966Stop: 3920279

          
Length: 1314


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4011 translation of PA4011Homolog Bit Score 859.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5744 (ORF: BLASTX 549.0), t_PA4011 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTCGACAGCTTCAACGCCTGGATGGCCGCCAACCCCGAGTGGCTGGGGATGGCCATCTTCCTCATC 
GCCTTCCTCGAATGCGCGGCCATCGTCGGCATCGTCCTGCCCGGCGTGGTGCTGCTGTTCGGCGTCGCGGTG 
ATCGCCGGCAGCGGCGCCCTCAGCCTCGGCGAAACCCTGATGCTGGCCTACGCCGGCGGGGTGCTGGGCGAC 
CTCAGCTCGTACTGGATCGGCCGCCGCTTCCACCAGAACATCCGCCGCCTGCCCGGCCTGCGCAGCCATCCG 
CAGTGGATCACCGCCGCCGAGGTGTACTTCGAGCGCTACGGTATCGCCAGCCTGCTGGTCGGCCGCTTCATC 
GGCGCCCTGCGACCGATGCTGCCGATGGTCGCCGGCATGCTCGACATGCCGTTCGGCCGTTTTCTCGGCGTT 
TCGCTGATTGCCGCCGCCGGCTGGGCGGTCGCCTACCTGTTGCCCGGCTGGGCTACCGGCGCAGCCCTGCGC 
CTGCCGTTGCCGGAAGGCTTCTGGAGCGAAGCCGGGATCGTCGCGGCCTGCCTGGCGGTGCTGGTCGGCGTG 
GTAGTCCAGGCCAGCCTGCGACGCAAACGCTGGGCAACCGCTGTGGCGGCCGCGCTGAGCCTGGTCCTGCTG 
CTGGCGATGACCGTCGCCTGGCCGTACCTCCAGGACCTCGACCAGGGCCTGATGACGCTGGTCCAGGAGCAT 
CGCAACGCCGACCTGAACCCGGTGATGGTGGTGGTCACCCGGCTCGGCGATTTCCGCACCCAGTTCATCGCC 
GGCGCGCTGCTCGGCGGTATCCTCCTGCTGACCCGGCAATGGCGTCCGGCCATCTTCGCCATCGGCACCCTG 
GTGGGTACCGCGCTGGCCAACCAGACCCTGAAGACCCTGTTCGCCCGCGCCCGCCCGGAAGTGCTGGCCGAA 
CCGCTGAGCAGCTTCAGCTTCCCCAGCGGACACAGCTCGGCGTCCTTCGCCTTCTTCCTCACCCTGGGCGTC 
CTCGCCAGCCGCCAGCAACCGCCGCGCTGGCGCCTGACCTGGGTACTGCTGGCGGTGATCCCGTCGCTGAGC 
ATCGCCCTGTCGCGGGTCTACCTTGGCGTGCACTGGCCGTCGGACATCGTCGCCGGCGCCCTGCTCGCCACT 
ACGGTCTGCGCCGCCAGCCTGTGGCTGAGCCAGCGCCGCGAGTCGCTGCCGGCGCTGCCGCAACGGGTCTGG 
TGGCTGCTGTTGCCGGTCTGCGTGGCGACCCTGGCGATCGCCGCCGGCTGGGCCCTGCCGGAAGCCATTGCG 
CGCTACCGGCCGCTGTGA