ViewGene
Locus Name:
GeneID:
Location:

GeneID:1230
TrivialName: PA14_33720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33720
PAO1 Ortholog Locus:PA2394
Sequence Length:1284
Protein Length:427
Start: 2993798
Stop: 2992515
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05782.1|AE004665_9 (AE004665) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 426/427 (99%), Positives = 426/427 (99%)
Sequence:
ATGAACGACCGTCGTACCTTTCTCAAGCAGGCCGGCATTCTCGCCGCCGGCCTGCCGCTGCTTTCCGCTGCC
CAGTCGCTCCGCGCCGAAGGCGCACCGAGCGACGCCGGCAATAAGTGGAAAGCGCTGCGCCAGCAATTCGAT
CTCGACCCGCAGTATCTGCACTTCGCAAACTTCCTCCTCACCTCACACCCTCGGCCGGTGCGGGAGGCCATC
GAGCGCCTGCGGGTCCGCTTCGACCGCAACCCGGGCGAAGCGGTGGACTGGCATCGCGAGGAAATCTGGAAA
TACGAGGACGAGGCTCGCGCCTGGGCAGGTCGCTACTTCGCCGTGCAACCTGGCCAGGTGGCGCTCACCGGC
AGCACCACCGACGGCCTGGCGGCGATCTACGGCGGCCTGCTGGTGCAGCCGGGCAAGGAGATTCTGACCTCC
TCCCACGAGCACTACTCCACCTACACCACCCTGGAATACCGGCACAAGCGCATGGGTACCCAGGTCCGCGAG
TTCCCGCTGTTCAAGGACCCGCATCGGGTTTCCGCCGACGAGATCCTGTCCAGCATCGCCGCTCAGATCCGC
CCGCAGACCCGGGTGCTGGGCATGACCTGGGTGCAGTCGGGCAGCGGCGTGAAGCTGCCGATCCGCGAGATC
GGCAAGCTGGTGCGCGAACTCAACCAGAAGCGCGACGAGCAGGACCGGATCATCTACGTGGTCGACGGCGTG
CATGGTTTCGGCGTGGAAGACGTCAGCTTCGCCGACTTCGACTGCGACTACTTCATCGCCGGCACCCACAAG
TGGCTGTTCGGTCCGCGTGGCACCGGGGTCATCATCGCCCGCTCGGAACAGCTCCAGGAGCACCTGGTGCCG
AGCATCCCGACCTTCTCCCGCGCCGACAACTTCGGCACCCTGATGACCCCTGGCGGCTACCACGCCTTCGAA
CATCGCCTGGCCCTGGGCACGGCCTTCGAGCTGCACCTGCAGTTGGGCAAGGCCGAGGTCCAGGCGCGTATC
CACCAGCTCAACGCCTACCTCAAGCAGCGCCTGGGCGAGCATCCCAAGGTCCGCCTGGTCACGCCGACCAGC
CCCGAGCTGTCTTCGGGCTTCACCTTCTTCCGCGTCGAAGGCCGCGATTGCGAGGCGGTCGCCAAACACCTG
ATGGCGCACCGGGTAATCAGCGACGCCGTGGATCGCGATGTCGGCCCGGTGGTGCGCCTGGCGCCGAGCCTG
CTGAACGACGAGGCGGAGATCGACCGGGTGCTGGAAATCCTCGCCCCGCAACTCGCCTGA
Translation:
MNDRRTFLKQAGILAAGLPLLSAAQSLRAEGAPSDAGNKWKALRQQFDLDPQYLHFANFLLTSHPRPVREAI
ERLRVRFDRNPGEAVDWHREEIWKYEDEARAWAGRYFAVQPGQVALTGSTTDGLAAIYGGLLVQPGKEILTS
SHEHYSTYTTLEYRHKRMGTQVREFPLFKDPHRVSADEILSSIAAQIRPQTRVLGMTWVQSGSGVKLPIREI
GKLVRELNQKRDEQDRIIYVVDGVHGFGVEDVSFADFDCDYFIAGTHKWLFGPRGTGVIIARSEQLQEHLVP
SIPTFSRADNFGTLMTPGGYHAFEHRLALGTAFELHLQLGKAEVQARIHQLNAYLKQRLGEHPKVRLVTPTS
PELSSGFTFFRVEGRDCEAVAKHLMAHRVISDAVDRDVGPVVRLAPSLLNDEAEIDRVLEILAPQLA*
AnnotationID:1239GeneID:1230
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 13:01:06
Gene Name:pvdN
Confidence Code:1
GeneProduct:PvdN
Cell Localization:()
Synonyms:PA2394
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0520
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Pyoverdine synthesis
Homology:
>gb|AAN69795.1|AE016616_2 (AE016789) aminotransferase, class V [Pseudomonas putida KT2440]
          Length = 428

 Score =  560 bits (1442), Expect = e-159
 Identities = 277/429 (64%), Positives = 330/429 (76%), Gaps = 6/429 (1%)

>gb|AAO55672.1| (AE016863) aminotransferase, class V [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 427

 Score =  541 bits (1395), Expect = e-153
 Identities = 268/424 (63%), Positives = 331/424 (78%), Gaps = 3/424 (0%)
Structural Features:
COG0520, CsdB, Selenocysteine lyase 
[Amino acid transport and metabolism]
CD-Length = 405 residues,  97.0% aligned
Score =  231 bits (591), Expect = 9e-62
Identities = 101/409 (24%), Positives = 162/409 (39%), Gaps = 37/409 (9%)
Genomic Context:






   
Comment:


















    ReferenceID:2463




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19606




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32944




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1230_cdd.html


    		




 
URL:

















    ReferenceID:38270




  
Author/Investigator(s):
        Ochsner UA, Wilderman PJ, Vasil AI, Vasil ML.





  
Title:
        GeneChip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genes.




  
PubMed:
        12207696


MedLine:
        




    
Source:
Mol Microbiol. 2002 Sep;45(5):1277-87.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:38271




  
Author/Investigator(s):
        Lamont IL, Martin LW.





  
Title:
        Identification and characterization of novel pyoverdine synthesis genes in Pseudomonas aeruginosa.




  
PubMed:
        12686626


MedLine:
        




    
Source:
Microbiology. 2003 Apr;149(Pt 4):833-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1230
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2244
                           PA2394_tr
                           translation of PA2394
                           427
                           99.76
                           99.76
                           0
                           2220.0
     

     
     
73587
                           gb|AAG05782.1|AE004665_9
                           (AE004665) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           427
                           99.76
                           99.76
                           0
                           2220.0
     

     
     
73588
                           gb|AAO17435.1|
                           (AF540993) PA2394 [Pseudomonas aeruginosa]
                           427
                           99.76
                           99.76
                           0
                           2220.0
     

     
     
73589
                           gb|AAO17424.1|
                           (AF540992) PA2394 [Pseudomonas aeruginosa]
                           427
                           99.76
                           99.76
                           0
                           2220.0
     

     
     
73590
                           gb|AAN69795.1|AE016616_2
                           (AE016789) aminotransferase, class V [Pseudomonas putida KT2440]
                           431
                           64.26
                           76.56
                           7
                           1450.0
     

     






      

          
GC ORFID: 44232How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2394Glimmer Score: 

          
Start: 1960118Stop: 1961401

          
Length: 1284


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2394 translation of PA2394Homolog Bit Score 859.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene465 (ORF: BLASTX 540.0), t_PA2394 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACCGTCGTACCTTTCTCAAGCAGGCCGGCATTCTCGCCGCCGGCCTGCCGCTGCTTTCCGCTGCC 
CAGTCGCTCCGCGCCGAAGGCGCACCGAGCGACGCCGGCAATAAGTGGAAAGCGCTGCGCCAGCAATTCGAT 
CTCGACCCGCAGTATCTGCACTTCGCAAACTTCCTCCTCACCTCACACCCTCGGCCGGTGCGGGAGGCCATC 
GAGCGCCTGCGGGTCCGCTTCGACCGCAACCCGGGCGAAGCGGTGGACTGGCATCGCGAGGAAATCTGGAAA 
TACGAGGACGAGGCTCGCGCCTGGGCAGGTCGCTACTTCGCCGTGCAACCTGGCCAGGTGGCGCTCACCGGC 
AGCACCACCGACGGCCTGGCGGCGATCTACGGCGGCCTGCTGGTGCAGCCGGGCAAGGAGATTCTGACCTCC 
TCCCACGAGCACTACTCCACCTACACCACCCTGGAATACCGGCACAAGCGCATGGGTACCCAGGTCCGCGAG 
TTCCCGCTGTTCAAGGACCCGCATCGGGTTTCCGCCGACGAGATCCTGTCCAGCATCGCCGCTCAGATCCGC 
CCGCAGACCCGGGTGCTGGGCATGACCTGGGTGCAGTCGGGCAGCGGCGTGAAGCTGCCGATCCGCGAGATC 
GGCAAGCTGGTGCGCGAACTCAACCAGAAGCGCGACGAGCAGGACCGGATCATCTACGTGGTCGACGGCGTG 
CATGGTTTCGGCGTGGAAGACGTCAGCTTCGCCGACTTCGACTGCGACTACTTCATCGCCGGCACCCACAAG 
TGGCTGTTCGGTCCGCGTGGCACCGGGGTCATCATCGCCCGCTCGGAACAGCTCCAGGAGCACCTGGTGCCG 
AGCATCCCGACCTTCTCCCGCGCCGACAACTTCGGCACCCTGATGACCCCTGGCGGCTACCACGCCTTCGAA 
CATCGCCTGGCCCTGGGCACGGCCTTCGAGCTGCACCTGCAGTTGGGCAAGGCCGAGGTCCAGGCGCGTATC 
CACCAGCTCAACGCCTACCTCAAGCAGCGCCTGGGCGAGCATCCCAAGGTCCGCCTGGTCACGCCGACCAGC 
CCCGAGCTGTCTTCGGGCTTCACCTTCTTCCGCGTCGAAGGCCGCGATTGCGAGGCGGTCGCCAAACACCTG 
ATGGCGCACCGGGTAATCAGCGACGCCGTGGATCGCGATGTCGGCCCGGTGGTGCGCCTGGCGCCGAGCCTG 
CTGAACGACGAGGCGGAGATCGACCGGGTGCTGGAAATCCTCGCCCCGCAACTCGCCTGA