ViewGene
Locus Name:
GeneID:
Location:

GeneID:1229
TrivialName: PA14_02980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02980
PAO1 Ortholog Locus:PA0240
Sequence Length:1266
Protein Length:421
Start: 261639
Stop: 260374
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03629.1|AE004462_2 (AE004462) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 419/421 (99%), Positives = 419/421 (99%)
Sequence:
ATGTCGCACCCGAGCCACGTCCGCGCGCTCTGCGCTTCCCTCTGCCTGGGCGCCGGCCTGCCAGTCCATGCC
GGGCACGTCCATGCCGGGCAAGGTTTCCTCGAAGATGCCAAGGCCAGCCTCACCGCGCGCAATTTCCACCTG
CACCGCAACTTCGTCGGCGATGCCAGCCAGGGCAAGGCCGAGGAGTGGACGCAGAGCTTCATCCTCGACGCC
CGCTCCGGCTTCACCCAGGGCAGCGTCGGCTTCGGCCTCGATGTCCTCGGTCTCTACAGCCTGAAGCTGGAT
GGCGGCAAGGGAACGGCCGGCACCCAACTGCTGCCAACCCACGACGACGGCCGCCCGGCCGACGACTTCGGA
CGCCTGGCGGTGGCCGGCAAGCTGCGCGTGTCGAACAGCGAACTGAAGATCGGCGAATGGATGCCGGTGCTG
CCGATCCTCCGCTCCGACGATGGCCGCTCGCTGCCGCAGACCTTCCGCGGCGGCCAGCTCAGCGCCAACGAG
ATCGCCGGCCTGACCCTCTACGCCGGCCAGTTCCGCGGCAACAGCCCGCGCAACGACGCAAGCATGCAGGAC
ATGTCGCTGTTCGGCCGGCCAACCGCCACTTCCGACCGCTTCGATTTCGCCGGCGGCGAATATCGCTTCAAT
GGCGAACGCAGCCTGCTCGGCCTGTGGAACGCCGAGCTGAAGGACATCTACCGCCAACAGTACCTGCAACTG
CAACACAGCCAGCCGCTCGGCGACTGGCTGCTGGGCGCCAACCTCGGCGGCTTCCGTGGCCGCGACGCTGGC
AGCGCGCGCGCCGGCAAGCTCGATAACCGCACCGTTTCCGCGCTGTTCTCCGCGCGCTACGGGCTGCATACC
CTCTATCTCGGCCTGCAGAAGGTCAGTGGCGACGATGGCTGGATGCGGGTCAACGGCACCAGCGGCGGAACC
CTGGCCAACGACAGCTACAACGCCAGCTACGACAATCCCGGCGAGCGCTCCTGGCAACTGCGCTACGACTTC
GACTTCGTTGGCCTCGGCCTACCCGGCCTGACCTTCATGACCCGCTACCTGCATGGCGACCATGTGCGCCTG
GCCGGAGTCACCGACGACGGCAGCGAATGGGGACGCGAGAGCGAGCTGGGCTACACGCTGCAGAGCGGCGCC
TTCAAGCGTCTCAACGTCCGCTGGCGCAACTCCAGCCAGCGCCGCGACTGGGGCAGCAATACCCGCTTCGAC
GAGAACCGGCTGATCGTCAGCTATCCGCTGAGCCTGTTGTGA
Translation:
MSHPSHVRALCASLCLGAGLPVHAGHVHAGQGFLEDAKASLTARNFHLHRNFVGDASQGKAEEWTQSFILDA
RSGFTQGSVGFGLDVLGLYSLKLDGGKGTAGTQLLPTHDDGRPADDFGRLAVAGKLRVSNSELKIGEWMPVL
PILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPTATSDRFDFAGGEYRFN
GERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHT
LYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRL
AGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGSNTRFDENRLIVSYPLSLL*
AnnotationID:1238GeneID:1229
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:37
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane porin
Cell Localization:()
Synonyms:PA0240
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD39555.1| (AF031417) PhaK-like protein [Pseudomonas putida]
          Length = 418

 Score =  596 bits (1537), Expect = e-170
 Identities = 293/409 (71%), Positives = 341/409 (83%), Gaps = 6/409 (1%)

>gb|AAN67006.1|AE016329_1 (AE016779) BenF-like porin [Pseudomonas putida KT2440]
          Length = 418

 Score =  595 bits (1534), Expect = e-169
 Identities = 292/409 (71%), Positives = 341/409 (83%), Gaps = 6/409 (1%)

>gb|AAO55855.1| (AE016864) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 418

 Score =  569 bits (1467), Expect = e-161
 Identities = 276/391 (70%), Positives = 323/391 (82%), Gaps = 3/391 (0%)






 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  96.9% aligned
Score =  253 bits (648), Expect = 2e-68
Identities = 149/436 (34%), Positives = 208/436 (47%), Gaps = 47/436 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2461




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19604




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33594




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1229_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1229
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2234
                           PA0240_tr
                           translation of PA0240
                           421
                           99.52
                           99.52
                           0
                           2222.0
     

     
     
73561
                           gb|AAG03629.1|AE004462_2
                           (AE004462) probable porin [Pseudomonas aeruginosa PAO1]
                           421
                           99.52
                           99.52
                           0
                           2222.0
     

     
     
73562
                           gb|AAD39555.1|
                           (AF031417) PhaK-like protein [Pseudomonas putida]
                           424
                           69.81
                           81.83
                           9
                           1545.0
     

     
     
73563
                           gb|AAN67006.1|AE016329_1
                           (AE016779) BenF-like porin [Pseudomonas putida KT2440]
                           424
                           69.57
                           81.83
                           9
                           1542.0
     

     
     
73565
                           gb|AAQ92184.1|
                           (AY349612) PhaK-like protein [Pseudomonas fluorescens]
                           426
                           67.13
                           78.40
                           12
                           1481.0
     

     






      

          
GC ORFID: 44231How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0240Glimmer Score: 

          
Start: 6062980Stop: 6061715

          
Length: 1266


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0240 translation of PA0240Homolog Bit Score 860.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene342 (ORF: BLASTX 580.0), psyr_15may02_Scaffold3_revised_gene5124 (ORF: BLASTX 565.0), t_PA4898 (ORF: BLASTX 440.0), t_PA2213 (ORF: BLASTX 410.0), t_PA0755 (ORF: BLASTX 331.0), t_PA3038 (ORF: BLASTX 312.0), t_PA4137 (ORF: BLASTX 302.0), t_PA2113 (ORF: BLASTX 296.0), t_PA1025 (ORF: BLASTX 296.0), t_PA3588 (ORF: BLASTX 293.0), t_PA4179 (ORF: BLASTX 290.0), psyr_15may02_Scaffold1_revised_gene1320 (ORF: BLASTX 278.0), t_PA0240 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCACCCGAGCCACGTCCGCGCGCTCTGCGCTTCCCTCTGCCTGGGCGCCGGCCTGCCAGTCCATGCC 
GGGCACGTCCATGCCGGGCAAGGTTTCCTCGAAGATGCCAAGGCCAGCCTCACCGCGCGCAATTTCCACCTG 
CACCGCAACTTCGTCGGCGATGCCAGCCAGGGCAAGGCCGAGGAGTGGACGCAGAGCTTCATCCTCGACGCC 
CGCTCCGGCTTCACCCAGGGCAGCGTCGGCTTCGGCCTCGATGTCCTCGGTCTCTACAGCCTGAAGCTGGAT 
GGCGGCAAGGGAACGGCCGGCACCCAACTGCTGCCAACCCACGACGACGGCCGCCCGGCCGACGACTTCGGA 
CGCCTGGCGGTGGCCGGCAAGCTGCGCGTGTCGAACAGCGAACTGAAGATCGGCGAATGGATGCCGGTGCTG 
CCGATCCTCCGCTCCGACGATGGCCGCTCGCTGCCGCAGACCTTCCGCGGCGGCCAGCTCAGCGCCAACGAG 
ATCGCCGGCCTGACCCTCTACGCCGGCCAGTTCCGCGGCAACAGCCCGCGCAACGACGCAAGCATGCAGGAC 
ATGTCGCTGTTCGGCCGGCCAACCGCCACTTCCGACCGCTTCGATTTCGCCGGCGGCGAATATCGCTTCAAT 
GGCGAACGCAGCCTGCTCGGCCTGTGGAACGCCGAGCTGAAGGACATCTACCGCCAACAGTACCTGCAACTG 
CAACACAGCCAGCCGCTCGGCGACTGGCTGCTGGGCGCCAACCTCGGCGGCTTCCGTGGCCGCGACGCTGGC 
AGCGCGCGCGCCGGCAAGCTCGATAACCGCACCGTTTCCGCGCTGTTCTCCGCGCGCTACGGGCTGCATACC 
CTCTATCTCGGCCTGCAGAAGGTCAGTGGCGACGATGGCTGGATGCGGGTCAACGGCACCAGCGGCGGAACC 
CTGGCCAACGACAGCTACAACGCCAGCTACGACAATCCCGGCGAGCGCTCCTGGCAACTGCGCTACGACTTC 
GACTTCGTTGGCCTCGGCCTACCCGGCCTGACCTTCATGACCCGCTACCTGCATGGCGACCATGTGCGCCTG 
GCCGGAGTCACCGACGACGGCAGCGAATGGGGACGCGAGAGCGAGCTGGGCTACACGCTGCAGAGCGGCGCC 
TTCAAGCGTCTCAACGTCCGCTGGCGCAACTCCAGCCAGCGCCGCGACTGGGGCAGCAATACCCGCTTCGAC 
GAGAACCGGCTGATCGTCAGCTATCCGCTGAGCCTGTTGTGA