ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1228

TrivialName: PA14_56390

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_56390

PAO1 Ortholog Locus: PA4338

Sequence Length: 1281

Protein Length: 426

Start: 5031217

Stop: 5029937

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07726.1|AE004850_4 (AE004850) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 424/426 (99%), Positives = 424/426 (99%)

Sequence:

GTGGCAACGCCCGACTCCAAGGAACGTTTCATCGGACTGGAATGGTTGCGCTTCCTGCTCGGCCTGTACGTG
GTGGTGTACCACACCCTGCATACCTATCCGAAAGAGCAGAAGTTTCCAGGTCTCGACGAACTGACCAGCCTG
GGGTTCTTCGCCACCAGTACCTTCTTCGTGCTTTCCGGCTTCCTCCTGGCCCATGTCTACGCACGCAGCGGC
CGGTTGCGCGAAAGCGCCCGCAGCTTCTGGACCAAGCGATTGTCCAATCTCTATCCGCTGCACCTGTTCTCC
CTGCTGCTGTCGATCCTGGTGTTGCTGGCCCTCAGCCACCTGGGAATCGGTCCCGAGCTGGACAAGGCCACC
CCGCGCTTCGTCATCTACGACACCAACGAAGTGCTCGGCCGCACCCACCCGGAACTCTTCCTGCACTGGATG
AGCAACACCGAACTGTTCGTCAACAGCATCCTGCAGATCCTCCTGCTGCAGGCCTGGAATCCCTATTACCTG
ACCTTCAACGCGCCGTTGTGGTCGCTGTCGACGCTGATGTTCTTCTACCTGGCGTTTCCCTTCGTCGCCCCG
CGGCTGATGCGCAGCCGGCACAAGTGGAAGGTGCTGGCGCTGGTCTGGCTGGTCTACCTGATCCCGCCGGTG
CTGGTGGTGGCCAGCGAGAGCTACGGGATCCCCTGGACCGGCCTGCTGCATCGCAATCCGTTGCTGCGCCTG
CCGGAATTCCTTGGCGGCATCCTGGCCTACGGGTTGTTCCGCGGCTACCGCGACCGCGGCATGGTGCCGGGA
CGTGGCCTGCTGGCCGCGCTGGTGGCGCTGGTGGTGGCGGCCTTCCTGGTGGCCGACTACCTGTTCACCCAG
GGCGCCAAGCATTGGTACTTCCTGCTGCACAACGGCCTGCTGCTGCCGGCCCAGTTGCTGCTGGTGTGCCTT
TGCGCGCTGCCCGCCGACCCGAAGAGCGCTTTCGTCCGCCACTGGTCGCCGCGCCTGGGGGCCGCCTCGCTG
TCGCTGTTCGCCCTGCATGTGCCGATGTTCACCCTGTTCTCCCGTAGCGAGCGCCTTATCGCCGTGCCGGGG
CGTTGTCTCGACGACTGGCGCGCCTGCACCGAGGCGGCGGCCGCGCTGCCATCGTCGCTGCTCTACTACCCG
CTGTTCCTGGTCCTGCTAGTGGCGTTCTGCGTACTGTTCCAGGAGCGCGGCGTGGTGCCGGTGCGCAAGTGG
CTGGTGCGCCGGCTGATGCCGACGCCGGCGCTGGCCAAGGTGCCGCGCCCGGCCTGA

Translation:

MATPDSKERFIGLEWLRFLLGLYVVVYHTLHTYPKEQKFPGLDELTSLGFFATSTFFVLSGFLLAHVYARSG
RLRESARSFWTKRLSNLYPLHLFSLLLSILVLLALSHLGIGPELDKATPRFVIYDTNEVLGRTHPELFLHWM
SNTELFVNSILQILLLQAWNPYYLTFNAPLWSLSTLMFFYLAFPFVAPRLMRSRHKWKVLALVWLVYLIPPV
LVVASESYGIPWTGLLHRNPLLRLPEFLGGILAYGLFRGYRDRGMVPGRGLLAALVALVVAAFLVADYLFTQ
GAKHWYFLLHNGLLLPAQLLLVCLCALPADPKSAFVRHWSPRLGAASLSLFALHVPMFTLFSRSERLIAVPG
RCLDDWRACTEAAAALPSSLLYYPLFLVLLVAFCVLFQERGVVPVRKWLVRRLMPTPALAKVPRPA*

AnnotationID:1237 GeneID:1228

AnnotatorUID: diggins

Modification Date/Time: 2005-04-04 17:05:48

Gene Name:

Confidence Code: 3

GeneProduct: putative acyltransferase

Cell Localization: ()

Synonyms: PA4338

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (13) Fatty acid and phospholipid metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1835

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG1835, Predicted acyltransferases [Lipid metabolism]
CD-Length = 386 residues,  98.2% aligned
Score = 99.9 bits (248), Expect = 5e-22
Identities = 108/421 (25%), Positives = 144/421 (34%), Gaps = 43/421 (10%)

Genomic Context:

Comment:

ReferenceID:14307

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19602

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36684

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1228_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1228

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2233 PA4338_tr translation of PA4338 426 99.53 99.53 0 2221.0

73560 gb|AAG07726.1|AE004850_4 (AE004850) hypothetical protein PA4338 [Pseudomonas aeruginosa PAO1] 426 99.29 99.53 0 2218.0

GC ORFID: `44230`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4338`	Glimmer Score:
Start: `4294893`	Stop: `4293613`
Length: `1281`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4338 translation of PA4338`	Homolog Bit Score `860.0`
Other Homologs: `t_PA4338 (ORF: GLIMMER)`
GC ORF Sequence
GTGGCAACGCCCGACTCCAAGGAACGTTTCATCGGACTGGAATGGTTGCGCTTCCTGCTCGGCCTGTACGTG GTGGTGTACCACACCCTGCATACCTATCCGAAAGAGCAGAAGTTTCCAGGTCTCGACGAACTGACCAGCCTG GGGTTCTTCGCCACCAGTACCTTCTTCGTGCTTTCCGGCTTCCTCCTGGCCCATGTCTACGCACGCAGCGGC CGGTTGCGCGAAAGCGCCCGCAGCTTCTGGACCAAGCGATTGTCCAATCTCTATCCGCTGCACCTGTTCTCC CTGCTGCTGTCGATCCTGGTGTTGCTGGCCCTCAGCCACCTGGGAATCGGTCCCGAGCTGGACAAGGCCACC CCGCGCTTCGTCATCTACGACACCAACGAAGTGCTCGGCCGCACCCACCCGGAACTCTTCCTGCACTGGATG AGCAACACCGAACTGTTCGTCAACAGCATCCTGCAGATCCTCCTGCTGCAGGCCTGGAATCCCTATTACCTG ACCTTCAACGCGCCGTTGTGGTCGCTGTCGACGCTGATGTTCTTCTACCTGGCGTTTCCCTTCGTCGCCCCG CGGCTGATGCGCAGCCGGCACAAGTGGAAGGTGCTGGCGCTGGTCTGGCTGGTCTACCTGATCCCGCCGGTG CTGGTGGTGGCCAGCGAGAGCTACGGGATCCCCTGGACCGGCCTGCTGCATCGCAATCCGTTGCTGCGCCTG CCGGAATTCCTTGGCGGCATCCTGGCCTACGGGTTGTTCCGCGGCTACCGCGACCGCGGCATGGTGCCGGGA CGTGGCCTGCTGGCCGCGCTGGTGGCGCTGGTGGTGGCGGCCTTCCTGGTGGCCGACTACCTGTTCACCCAG GGCGCCAAGCATTGGTACTTCCTGCTGCACAACGGCCTGCTGCTGCCGGCCCAGTTGCTGCTGGTGTGCCTT TGCGCGCTGCCCGCCGACCCGAAGAGCGCTTTCGTCCGCCACTGGTCGCCGCGCCTGGGGGCCGCCTCGCTG TCGCTGTTCGCCCTGCATGTGCCGATGTTCACCCTGTTCTCCCGTAGCGAGCGCCTTATCGCCGTGCCGGGG CGTTGTCTCGACGACTGGCGCGCCTGCACCGAGGCGGCGGCCGCGCTGCCATCGTCGCTGCTCTACTACCCG CTGTTCCTGGTCCTGCTAGTGGCGTTCTGCGTACTGTTCCAGGAGCGCGGCGTGGTGCCGGTGCGCAAGTGG CTGGTGCGCCGGCTGATGCCGACGCCGGCGCTGGCCAAGGTGCCGCGCCCGGCCTGA